Wall clock time and date at job start Tue Mar 31 2020 17:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 C 1.52999 * 109.47388 * 119.99750 * 2 1 3 5 5 C 1.52999 * 109.47098 * 65.00706 * 4 2 1 6 6 N 1.46500 * 109.47396 * 184.81504 * 5 4 2 7 7 C 1.46498 * 119.99837 * 265.07932 * 6 5 4 8 8 C 1.50699 * 109.47428 * 284.59448 * 7 6 5 9 9 H 1.08000 * 120.00122 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00149 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99735 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 119.99893 * 0.02562 * 10 8 7 13 13 H 1.48491 * 109.47429 * 89.99524 * 12 10 8 14 14 H 1.48503 * 109.47040 * 209.99615 * 12 10 8 15 15 H 1.48501 * 109.47001 * 329.99147 * 12 10 8 16 16 C 1.34777 * 120.00184 * 85.07952 * 6 5 4 17 17 O 1.21588 * 119.99888 * 6.59421 * 16 6 5 18 18 C 1.47593 * 120.00319 * 186.59173 * 16 6 5 19 19 C 1.38967 * 119.88383 * 325.50667 * 18 16 6 20 20 C 1.39700 * 119.59276 * 179.97438 * 19 18 16 21 21 N 1.35465 * 133.01450 * 179.97438 * 20 19 18 22 22 N 1.28636 * 110.13983 * 180.02562 * 21 20 19 23 23 N 1.40223 * 109.53253 * 359.97438 * 22 21 20 24 24 H 0.97002 * 126.65792 * 180.02562 * 23 22 21 25 25 C 1.37307 * 106.68827 * 359.97438 * 23 22 21 26 26 C 1.39175 * 133.68629 * 179.97438 * 25 23 22 27 27 C 1.36581 * 120.13084 * 180.27991 * 26 25 23 28 28 F 1.35101 * 119.80700 * 179.70801 * 27 26 25 29 29 H 1.08992 * 109.47399 * 64.81617 * 1 2 3 30 30 H 1.09001 * 109.47216 * 184.81837 * 1 2 3 31 31 H 1.09004 * 109.46834 * 304.81191 * 1 2 3 32 32 H 1.08994 * 109.47260 * 240.00053 * 2 1 3 33 33 H 1.08998 * 109.47560 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47116 * 300.00459 * 3 2 1 35 35 H 1.09008 * 109.47055 * 59.99994 * 3 2 1 36 36 H 1.09004 * 109.47445 * 305.01241 * 4 2 1 37 37 H 1.09001 * 109.47390 * 185.00429 * 4 2 1 38 38 H 1.08996 * 109.47245 * 64.81011 * 5 4 2 39 39 H 1.09001 * 109.47062 * 304.81603 * 5 4 2 40 40 H 1.09003 * 109.47027 * 44.59773 * 7 6 5 41 41 H 1.09006 * 109.46984 * 164.59850 * 7 6 5 42 42 H 0.97003 * 119.99228 * 180.02562 * 11 10 8 43 43 H 1.08003 * 120.20751 * 359.97438 * 19 18 16 44 44 H 1.08002 * 119.93157 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6355 -2.1954 1.1880 6 7 2.0226 -2.8604 2.4347 7 6 3.2992 -3.5741 2.5183 8 6 3.1908 -4.8853 1.7834 9 1 2.2638 -5.1594 1.3019 10 6 4.2754 -5.7346 1.7250 11 7 4.1809 -6.8786 1.0833 12 14 5.8790 -5.2601 2.5573 13 1 5.8777 -5.7597 3.9557 14 1 7.0175 -5.8619 1.8178 15 1 6.0168 -3.7815 2.5600 16 6 1.2043 -2.8155 3.5046 17 8 0.0950 -2.3283 3.4016 18 6 1.6546 -3.3577 4.8014 19 6 2.4841 -4.4721 4.8355 20 6 2.9071 -4.9799 6.0662 21 7 3.6963 -6.0250 6.4127 22 7 3.7976 -6.0981 7.6930 23 7 3.0532 -5.0660 8.2819 24 1 2.9576 -4.8896 9.2310 25 6 2.4867 -4.3526 7.2545 26 6 1.6565 -3.2369 7.2022 27 6 1.2420 -2.7465 5.9967 28 9 0.4313 -1.6666 5.9538 29 1 -0.3634 0.4373 -0.9299 30 1 -0.3634 -1.0240 0.0863 31 1 -0.3633 0.5867 0.8438 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 1.6053 -0.2618 2.1370 37 1 3.1264 -0.6442 1.2952 38 1 2.1384 -2.6757 0.3487 39 1 0.5561 -2.2708 1.0560 40 1 4.0845 -2.9681 2.0664 41 1 3.5422 -3.7627 3.5641 42 1 4.9439 -7.4762 1.0425 43 1 2.8000 -4.9427 3.9161 44 1 1.3360 -2.7603 8.1169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781943731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:29 Heat of formation + Delta-G solvation = 22.389464 kcal Electronic energy + Delta-G solvation = -29550.542834 eV Core-core repulsion = 25419.318337 eV Total energy + Delta-G solvation = -4131.224497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 9.98 seconds Orbital eigenvalues (eV) -50.13845 -43.32925 -41.22617 -38.37838 -37.76877 -36.63500 -34.87718 -34.56492 -32.21460 -31.31456 -30.53460 -29.32010 -27.98987 -25.86562 -25.12264 -24.62063 -23.93616 -23.35752 -20.98160 -20.73824 -19.88777 -19.08229 -19.05815 -18.24743 -17.48224 -17.39811 -17.07732 -16.49890 -16.38123 -16.10374 -16.01078 -15.73004 -15.53278 -14.85093 -14.77831 -14.61415 -14.57036 -14.33367 -13.91033 -13.58629 -13.33960 -13.16705 -13.09079 -12.88134 -12.83051 -12.73569 -12.54594 -12.33571 -12.25124 -12.11452 -11.89147 -11.77408 -11.61398 -11.51970 -11.39331 -10.95357 -10.80063 -10.05253 -9.64064 -9.47905 -8.35537 -6.43620 -0.87312 -0.43095 0.86386 1.20701 1.36826 1.42546 1.46309 1.57774 2.05758 2.29183 2.30362 2.78017 2.93827 3.00086 3.24897 3.42828 3.50145 3.81650 3.96811 3.97301 4.08694 4.11874 4.29394 4.40664 4.53445 4.58863 4.65704 4.69202 4.72895 4.78582 4.83788 4.85898 4.88727 4.97278 5.04306 5.13951 5.15213 5.27857 5.32399 5.36445 5.49720 5.51949 5.65839 5.94121 6.08859 6.50776 6.64734 6.70681 7.08075 7.23902 8.79390 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009456 B = 0.005299 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.329666 B = 5282.627430 C = 7537.202499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.117 4.117 5 C 0.117 3.883 6 N -0.583 5.583 7 C 0.191 3.809 8 C -0.543 4.543 9 H 0.042 0.958 10 C 0.041 3.959 11 N -0.925 5.925 12 Si 0.908 3.092 13 H -0.256 1.256 14 H -0.280 1.280 15 H -0.238 1.238 16 C 0.557 3.443 17 O -0.569 6.569 18 C -0.194 4.194 19 C 0.014 3.986 20 C -0.058 4.058 21 N -0.229 5.229 22 N -0.006 5.006 23 N -0.465 5.465 24 H 0.471 0.529 25 C 0.143 3.857 26 C -0.146 4.146 27 C 0.194 3.806 28 F -0.115 7.115 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.271 0.729 43 H 0.175 0.825 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 12.879 11.546 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.197 4.197 4 C -0.156 4.156 5 C -0.005 4.005 6 N -0.311 5.311 7 C 0.069 3.931 8 C -0.581 4.581 9 H 0.060 0.940 10 C -0.161 4.161 11 N -0.563 5.563 12 Si 0.730 3.270 13 H -0.181 1.181 14 H -0.206 1.206 15 H -0.161 1.161 16 C 0.346 3.654 17 O -0.451 6.451 18 C -0.201 4.201 19 C -0.009 4.009 20 C -0.182 4.182 21 N -0.109 5.109 22 N 0.012 4.988 23 N -0.191 5.191 24 H 0.324 0.676 25 C 0.018 3.982 26 C -0.169 4.169 27 C 0.170 3.830 28 F -0.093 7.093 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.192 0.808 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.400 11.768 11.618 16.596 hybrid contribution -0.044 0.351 0.193 0.403 sum -1.444 12.119 11.811 16.984 Atomic orbital electron populations 1.21866 0.95147 1.01394 1.01923 1.21044 0.96032 0.96908 0.97090 1.21783 1.01058 0.94740 1.02159 1.21905 1.00979 0.93815 0.98886 1.21578 1.00738 0.92814 0.85412 1.47839 1.20346 1.51190 1.11738 1.20440 0.82323 0.91486 0.98823 1.21328 0.99216 1.02547 1.35035 0.94010 1.25559 1.01593 0.94202 0.94777 1.69998 1.32719 1.11015 1.42553 0.86279 0.79680 0.80836 0.80168 1.18051 1.20560 1.16144 1.18063 0.84378 0.78895 0.84113 1.90721 1.20316 1.48786 1.85281 1.19737 1.05775 1.00718 0.93865 1.21729 0.88909 0.91753 0.98460 1.19972 1.05322 0.97940 0.94969 1.74992 1.13932 1.16186 1.05817 1.81531 1.10732 1.05814 1.00688 1.47588 1.38728 1.22649 1.10110 0.67616 1.18954 0.96320 0.94740 0.88154 1.19601 1.01993 0.96766 0.98574 1.16882 0.89543 0.84381 0.92166 1.91584 1.69422 1.51170 1.97160 0.91306 0.93728 0.93175 0.90695 0.92428 0.91381 0.92908 0.92919 0.91631 0.90363 0.91143 0.94019 0.92074 0.91953 0.80795 0.78257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.06 71.98 0.65 -2.90 16 2 C -0.09 -2.23 2.92 -10.79 -0.03 -2.26 16 3 C -0.14 -2.78 9.19 71.98 0.66 -2.12 16 4 C -0.12 -3.51 4.97 30.59 0.15 -3.36 16 5 C 0.12 4.26 5.21 86.38 0.45 4.71 16 6 N -0.58 -23.86 2.51 -829.85 -2.08 -25.94 16 7 C 0.19 8.23 3.73 85.63 0.32 8.55 16 8 C -0.54 -28.32 8.09 25.60 0.21 -28.12 16 9 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 10 C 0.04 2.17 5.47 84.65 0.46 2.63 16 11 N -0.93 -54.01 13.96 21.45 0.30 -53.72 16 12 Si 0.91 40.05 27.47 68.60 1.88 41.93 16 13 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 14 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 15 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 16 C 0.56 22.94 7.26 86.71 0.63 23.57 16 17 O -0.57 -25.33 15.64 -3.99 -0.06 -25.39 16 18 C -0.19 -7.02 5.51 -20.10 -0.11 -7.13 16 19 C 0.01 0.52 7.45 22.80 0.17 0.69 16 20 C -0.06 -2.00 7.26 39.56 0.29 -1.71 16 21 N -0.23 -8.34 12.40 -52.19 -0.65 -8.99 16 22 N -0.01 -0.16 13.82 37.02 0.51 0.35 16 23 N -0.46 -8.98 7.54 -51.46 -0.39 -9.37 16 24 H 0.47 4.04 8.96 -213.24 -1.91 2.13 16 25 C 0.14 3.49 7.34 39.14 0.29 3.78 16 26 C -0.15 -3.02 9.97 22.11 0.22 -2.80 16 27 C 0.19 5.62 7.18 22.42 0.16 5.79 16 28 F -0.12 -3.48 16.03 44.97 0.72 -2.76 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.22 6.26 -2.39 -0.01 1.21 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 2.95 7.91 -2.39 -0.02 2.93 16 39 H 0.07 2.67 5.61 -2.39 -0.01 2.66 16 40 H 0.04 1.74 7.20 -2.39 -0.02 1.72 16 41 H 0.06 2.58 3.23 -2.77 -0.01 2.57 16 42 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.18 7.80 3.92 -2.91 -0.01 7.79 16 44 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -68.63 363.38 3.85 -64.78 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.90 Total: 19.78 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.52 Total: -0.67 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -2.30 Total: -97.66 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.06 Total: -25.39 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.72 Total: -2.76 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.88 Total: 41.93 kcal Total: -68.63 3.85 -64.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781943731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.168 kcal (2) G-P(sol) polarization free energy of solvation -68.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.98 seconds