Wall clock time and date at job start Wed Apr 1 2020 00:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48493 * 109.47355 * 240.00394 * 3 2 1 5 5 H 1.48501 * 109.47307 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47072 * 120.00106 * 3 2 1 7 7 C 1.37879 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99383 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00081 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46984 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99716 * 180.02562 * 10 9 7 12 12 O 1.21576 * 120.00304 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99442 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99531 * 175.31660 * 13 11 10 15 15 C 1.50700 * 109.47263 * 263.87918 * 14 13 11 16 16 C 1.38161 * 120.03002 * 260.64562 * 15 14 13 17 17 C 1.38241 * 120.05858 * 179.72649 * 16 15 14 18 18 C 1.38293 * 120.10931 * 0.29093 * 17 16 15 19 19 C 1.38123 * 120.05498 * 0.02562 * 18 17 16 20 20 C 1.38713 * 120.02708 * 80.94318 * 15 14 13 21 21 O 1.35903 * 120.05741 * 0.02562 * 20 15 14 22 22 C 1.46495 * 119.99977 * 355.31846 * 13 11 10 23 23 C 1.53005 * 109.46934 * 273.22215 * 22 13 11 24 24 H 1.09005 * 109.82285 * 301.55120 * 23 22 13 25 25 C 1.54378 * 109.82684 * 180.66870 * 23 22 13 26 26 C 1.55459 * 102.18263 * 219.18297 * 25 23 22 27 27 C 1.54947 * 100.98894 * 34.03982 * 26 25 23 28 28 O 1.43237 * 109.82975 * 62.44187 * 23 22 13 29 29 H 0.97003 * 120.00051 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47364 * 60.00245 * 9 7 2 31 31 H 1.09007 * 109.47204 * 299.99764 * 9 7 2 32 32 H 0.97002 * 119.99935 * 359.97438 * 10 9 7 33 33 H 1.09001 * 109.47092 * 143.87828 * 14 13 11 34 34 H 1.09006 * 109.47481 * 23.88221 * 14 13 11 35 35 H 1.08004 * 119.96898 * 359.97438 * 16 15 14 36 36 H 1.07998 * 119.94663 * 180.27816 * 17 16 15 37 37 H 1.07998 * 119.97024 * 179.97438 * 18 17 16 38 38 H 1.08002 * 120.02540 * 179.97438 * 19 18 17 39 39 H 0.96699 * 113.99651 * 264.65938 * 21 20 15 40 40 H 1.08997 * 109.47700 * 33.22156 * 22 13 11 41 41 H 1.09006 * 109.46865 * 153.22556 * 22 13 11 42 42 H 1.09003 * 110.85061 * 337.31644 * 25 23 22 43 43 H 1.09005 * 110.85390 * 100.94239 * 25 23 22 44 44 H 1.08999 * 111.05729 * 276.11717 * 26 25 23 45 45 H 1.08999 * 111.18356 * 152.00958 * 26 25 23 46 46 H 1.09000 * 110.30635 * 204.69477 * 27 26 25 47 47 H 1.09000 * 110.39333 * 82.56687 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7536 -4.8833 -0.0011 12 8 0.5583 -5.1055 -0.0011 13 7 2.6295 -5.9078 -0.0016 14 6 2.1444 -7.2863 0.1015 15 6 2.2084 -7.7353 1.5386 16 6 3.2637 -8.5140 1.9733 17 6 3.3259 -8.9215 3.2928 18 6 2.3296 -8.5561 4.1795 19 6 1.2691 -7.7832 3.7483 20 6 1.2048 -7.3723 2.4246 21 8 0.1623 -6.6119 1.9979 22 6 4.0666 -5.6427 -0.1051 23 6 4.4625 -5.5466 -1.5799 24 1 4.2064 -6.4739 -2.0926 25 6 5.9791 -5.2840 -1.6990 26 6 6.0457 -4.2757 -2.8803 27 6 4.7342 -3.4796 -2.6635 28 8 3.7813 -4.4470 -2.1952 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8898 32 1 3.1566 -3.4354 -0.0009 33 1 2.7680 -7.9376 -0.5109 34 1 1.1134 -7.3358 -0.2491 35 1 4.0427 -8.8012 1.2825 36 1 4.1540 -9.5264 3.6317 37 1 2.3803 -8.8760 5.2098 38 1 0.4911 -7.4985 4.4411 39 1 0.2751 -5.6649 2.1575 40 1 4.2999 -4.7031 0.3956 41 1 4.6206 -6.4538 0.3677 42 1 6.3682 -4.8360 -0.7846 43 1 6.5142 -6.2024 -1.9405 44 1 6.0366 -4.7944 -3.8390 45 1 6.9175 -3.6270 -2.7958 46 1 4.3978 -3.0415 -3.6032 47 1 4.8818 -2.7009 -1.9152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787357522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:11 Heat of formation + Delta-G solvation = -86.767294 kcal Electronic energy + Delta-G solvation = -30259.906541 eV Core-core repulsion = 26215.116206 eV Total energy + Delta-G solvation = -4044.790335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.27283 -39.42688 -38.52742 -36.28242 -35.25983 -34.03297 -32.42868 -32.13330 -31.53847 -30.07854 -29.46155 -27.32521 -26.06690 -24.92536 -22.58765 -22.40010 -21.75522 -21.34271 -21.10507 -19.02037 -18.04580 -17.88162 -16.62941 -16.36063 -16.07059 -15.85955 -15.74592 -15.45005 -14.86616 -14.73682 -14.54204 -14.02979 -13.80444 -13.58252 -13.40707 -13.28823 -13.10796 -12.93316 -12.25141 -12.14898 -11.95309 -11.88672 -11.77506 -11.67580 -11.63797 -11.38775 -11.10796 -11.05059 -10.91960 -10.90052 -10.83295 -10.23103 -10.15949 -9.49061 -9.30180 -9.22034 -8.84519 -8.63930 -8.51555 -8.19407 -7.53277 -6.08874 -4.14223 1.27001 1.33847 3.24395 3.27352 3.32935 3.34243 3.75365 3.97171 4.12157 4.36040 4.43382 4.54933 4.65322 4.77696 4.85077 4.88078 4.94718 5.02352 5.13867 5.22556 5.25185 5.25763 5.27277 5.46928 5.49565 5.56902 5.57300 5.70358 5.72086 5.90175 5.93737 5.95421 5.99219 6.12402 6.13456 6.36180 6.44998 6.57404 6.83989 6.92187 7.23585 7.28226 7.61180 7.67064 7.72352 7.97259 8.09065 8.12074 8.85729 9.07616 9.44857 9.62694 11.01383 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.004348 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.470150 B = 6438.498498 C = 8415.470114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.058 0.942 9 C 0.270 3.730 10 N -0.717 5.717 11 C 0.698 3.302 12 O -0.589 6.589 13 N -0.628 5.628 14 C 0.176 3.824 15 C -0.130 4.130 16 C -0.096 4.096 17 C -0.141 4.141 18 C -0.104 4.104 19 C -0.158 4.158 20 C 0.136 3.864 21 O -0.481 6.481 22 C 0.105 3.895 23 C 0.059 3.941 24 H 0.078 0.922 25 C -0.149 4.149 26 C -0.156 4.156 27 C 0.050 3.950 28 O -0.356 6.356 29 H 0.265 0.735 30 H 0.023 0.977 31 H 0.020 0.980 32 H 0.384 0.616 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.398 0.602 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.323 -15.936 1.708 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.076 0.924 9 C 0.149 3.851 10 N -0.369 5.369 11 C 0.400 3.600 12 O -0.468 6.468 13 N -0.366 5.366 14 C 0.053 3.947 15 C -0.132 4.132 16 C -0.115 4.115 17 C -0.159 4.159 18 C -0.123 4.123 19 C -0.177 4.177 20 C 0.090 3.910 21 O -0.294 6.294 22 C -0.020 4.020 23 C 0.000 4.000 24 H 0.096 0.904 25 C -0.187 4.187 26 C -0.193 4.193 27 C -0.027 4.027 28 O -0.275 6.275 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.218 0.782 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.258 0.742 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.753 -16.387 1.499 20.818 hybrid contribution 1.469 1.481 0.212 2.096 sum 14.221 -14.906 1.711 20.673 Atomic orbital electron populations 1.69968 1.06006 1.27161 1.49185 1.24910 0.94845 0.99156 0.95000 0.86549 0.79465 0.82758 0.78525 1.20184 1.21139 1.20238 1.21147 0.92978 0.90554 1.52675 0.92412 1.18885 0.87795 0.81209 0.97231 1.45708 1.10630 1.04203 1.76374 1.16063 0.84865 0.81034 0.78053 1.90874 1.13546 1.83706 1.58649 1.47046 1.05054 1.05150 1.79301 1.19973 1.02516 0.81573 0.90660 1.20743 0.94233 1.00215 0.98018 1.20928 0.97136 0.97566 0.95847 1.21049 0.99417 1.01756 0.93703 1.20988 0.94050 0.97747 0.99489 1.21552 0.99415 1.01193 0.95515 1.18529 0.87293 0.94395 0.90803 1.84801 1.38468 1.22577 1.83525 1.21857 0.82687 1.02161 0.95273 1.23277 0.90921 0.91647 0.94190 0.90411 1.23154 0.95922 1.00195 0.99457 1.23295 0.99124 0.98200 0.98714 1.23391 0.87434 0.91938 0.99911 1.88654 1.30760 1.31050 1.76994 0.92540 0.95885 0.96173 0.78217 0.90994 0.87939 0.86064 0.86218 0.86119 0.85691 0.74246 0.90615 0.89911 0.90269 0.90206 0.90712 0.90109 0.89863 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.53 9.28 -34.44 -0.32 -14.85 16 8 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 9 C 0.27 7.25 5.43 -5.20 -0.03 7.22 16 10 N -0.72 -15.64 4.72 -66.41 -0.31 -15.95 16 11 C 0.70 14.52 7.40 -86.91 -0.64 13.88 16 12 O -0.59 -14.26 12.89 -16.09 -0.21 -14.47 16 13 N -0.63 -9.91 2.45 -180.80 -0.44 -10.35 16 14 C 0.18 2.53 5.34 -5.19 -0.03 2.50 16 15 C -0.13 -1.77 5.46 -104.47 -0.57 -2.35 16 16 C -0.10 -1.04 9.67 -39.61 -0.38 -1.43 16 17 C -0.14 -1.43 10.04 -39.56 -0.40 -1.83 16 18 C -0.10 -1.14 10.04 -39.60 -0.40 -1.53 16 19 C -0.16 -2.07 9.99 -39.43 -0.39 -2.47 16 20 C 0.14 2.08 6.68 -39.22 -0.26 1.82 16 21 O -0.48 -8.65 10.93 -40.82 -0.45 -9.09 16 22 C 0.10 1.29 4.92 -4.04 -0.02 1.27 16 23 C 0.06 0.70 3.78 -26.01 -0.10 0.60 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 25 C -0.15 -1.29 6.56 -24.70 -0.16 -1.45 16 26 C -0.16 -1.45 7.16 -24.40 -0.17 -1.63 16 27 C 0.05 0.65 7.78 38.18 0.30 0.95 16 28 O -0.36 -5.64 9.04 -35.23 -0.32 -5.96 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.38 7.60 5.44 -40.82 -0.22 7.37 16 33 H 0.07 0.81 7.99 -51.93 -0.41 0.39 16 34 H 0.10 1.78 6.88 -51.93 -0.36 1.42 16 35 H 0.12 1.00 8.04 -52.48 -0.42 0.58 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.40 7.27 7.66 45.56 0.35 7.62 16 40 H 0.08 0.99 6.35 -51.93 -0.33 0.66 16 41 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 42 H 0.08 0.63 7.85 -51.93 -0.41 0.23 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -33.35 382.63 -10.33 -43.69 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.41 Total: 13.61 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -3.68 Total: 2.39 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.02 Total: -51.79 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.97 Total: -29.52 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.35 -10.33 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.082 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds