Wall clock time and date at job start Wed Apr 1 2020 00:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48493 * 109.47355 * 240.00394 * 3 2 1 5 5 H 1.48501 * 109.47307 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47072 * 120.00106 * 3 2 1 7 7 C 1.37879 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99383 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00081 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46984 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99716 * 180.02562 * 10 9 7 12 12 O 1.21576 * 120.00304 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99442 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99531 * 175.31660 * 13 11 10 15 15 C 1.50700 * 109.47263 * 263.87918 * 14 13 11 16 16 C 1.38161 * 120.03002 * 260.64562 * 15 14 13 17 17 C 1.38241 * 120.05858 * 179.72649 * 16 15 14 18 18 C 1.38293 * 120.10931 * 0.29093 * 17 16 15 19 19 C 1.38123 * 120.05498 * 0.02562 * 18 17 16 20 20 C 1.38713 * 120.02708 * 80.94318 * 15 14 13 21 21 O 1.35903 * 120.05741 * 0.02562 * 20 15 14 22 22 C 1.46495 * 119.99977 * 355.31846 * 13 11 10 23 23 C 1.53005 * 109.46934 * 273.22215 * 22 13 11 24 24 H 1.09005 * 109.82285 * 301.55120 * 23 22 13 25 25 C 1.54378 * 109.82684 * 180.66870 * 23 22 13 26 26 C 1.55459 * 102.18263 * 219.18297 * 25 23 22 27 27 C 1.54947 * 100.98894 * 34.03982 * 26 25 23 28 28 O 1.43237 * 109.82975 * 62.44187 * 23 22 13 29 29 H 0.97003 * 120.00051 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47364 * 60.00245 * 9 7 2 31 31 H 1.09007 * 109.47204 * 299.99764 * 9 7 2 32 32 H 0.97002 * 119.99935 * 359.97438 * 10 9 7 33 33 H 1.09001 * 109.47092 * 143.87828 * 14 13 11 34 34 H 1.09006 * 109.47481 * 23.88221 * 14 13 11 35 35 H 1.08004 * 119.96898 * 359.97438 * 16 15 14 36 36 H 1.07998 * 119.94663 * 180.27816 * 17 16 15 37 37 H 1.07998 * 119.97024 * 179.97438 * 18 17 16 38 38 H 1.08002 * 120.02540 * 179.97438 * 19 18 17 39 39 H 0.96699 * 113.99651 * 264.65938 * 21 20 15 40 40 H 1.08997 * 109.47700 * 33.22156 * 22 13 11 41 41 H 1.09006 * 109.46865 * 153.22556 * 22 13 11 42 42 H 1.09003 * 110.85061 * 337.31644 * 25 23 22 43 43 H 1.09005 * 110.85390 * 100.94239 * 25 23 22 44 44 H 1.08999 * 111.05729 * 276.11717 * 26 25 23 45 45 H 1.08999 * 111.18356 * 152.00958 * 26 25 23 46 46 H 1.09000 * 110.30635 * 204.69477 * 27 26 25 47 47 H 1.09000 * 110.39333 * 82.56687 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7536 -4.8833 -0.0011 12 8 0.5583 -5.1055 -0.0011 13 7 2.6295 -5.9078 -0.0016 14 6 2.1444 -7.2863 0.1015 15 6 2.2084 -7.7353 1.5386 16 6 3.2637 -8.5140 1.9733 17 6 3.3259 -8.9215 3.2928 18 6 2.3296 -8.5561 4.1795 19 6 1.2691 -7.7832 3.7483 20 6 1.2048 -7.3723 2.4246 21 8 0.1623 -6.6119 1.9979 22 6 4.0666 -5.6427 -0.1051 23 6 4.4625 -5.5466 -1.5799 24 1 4.2064 -6.4739 -2.0926 25 6 5.9791 -5.2840 -1.6990 26 6 6.0457 -4.2757 -2.8803 27 6 4.7342 -3.4796 -2.6635 28 8 3.7813 -4.4470 -2.1952 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8898 32 1 3.1566 -3.4354 -0.0009 33 1 2.7680 -7.9376 -0.5109 34 1 1.1134 -7.3358 -0.2491 35 1 4.0427 -8.8012 1.2825 36 1 4.1540 -9.5264 3.6317 37 1 2.3803 -8.8760 5.2098 38 1 0.4911 -7.4985 4.4411 39 1 0.2751 -5.6649 2.1575 40 1 4.2999 -4.7031 0.3956 41 1 4.6206 -6.4538 0.3677 42 1 6.3682 -4.8360 -0.7846 43 1 6.5142 -6.2024 -1.9405 44 1 6.0366 -4.7944 -3.8390 45 1 6.9175 -3.6270 -2.7958 46 1 4.3978 -3.0415 -3.6032 47 1 4.8818 -2.7009 -1.9152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787357522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:02 Heat of formation + Delta-G solvation = -109.145807 kcal Electronic energy + Delta-G solvation = -30260.876946 eV Core-core repulsion = 26215.116206 eV Total energy + Delta-G solvation = -4045.760740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.68 seconds Orbital eigenvalues (eV) -41.52551 -40.43964 -39.86664 -37.46183 -36.65878 -35.96646 -34.30899 -33.07150 -32.69661 -31.07220 -30.51314 -29.22416 -27.20376 -26.22682 -24.38887 -23.47273 -22.63637 -22.39021 -22.15902 -20.65838 -19.49555 -19.04583 -18.06811 -17.54680 -17.42612 -17.27512 -16.79208 -16.56749 -16.51049 -16.04932 -15.86432 -15.29851 -15.07554 -14.85765 -14.77243 -14.41695 -14.26627 -14.04807 -13.89972 -13.72184 -13.20987 -13.09184 -12.94326 -12.80615 -12.77139 -12.67084 -12.52093 -12.33392 -12.19488 -12.06448 -11.96414 -11.64508 -11.44825 -11.32497 -10.92730 -10.74306 -10.57840 -9.84304 -9.81378 -9.46601 -9.21102 -8.24537 -6.40154 0.29157 0.40112 1.41907 1.46622 1.54538 1.94131 2.39823 2.41215 2.79827 3.05451 3.10068 3.35909 3.47494 3.65859 3.79378 3.87436 3.95625 4.05302 4.15033 4.21421 4.32220 4.33478 4.46167 4.56331 4.59671 4.67039 4.74453 4.83276 4.90763 4.94665 4.98487 5.03302 5.09659 5.11182 5.15056 5.34643 5.35527 5.44895 5.51179 5.56980 5.60154 5.72448 5.83283 5.94126 5.98184 6.22219 6.30241 6.70933 6.79253 7.28927 7.36607 7.90754 8.87637 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.004348 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.470150 B = 6438.498498 C = 8415.470114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.294 3.706 10 N -0.711 5.711 11 C 0.695 3.305 12 O -0.632 6.632 13 N -0.616 5.616 14 C 0.178 3.822 15 C -0.142 4.142 16 C -0.087 4.087 17 C -0.130 4.130 18 C -0.102 4.102 19 C -0.172 4.172 20 C 0.089 3.911 21 O -0.503 6.503 22 C 0.100 3.900 23 C 0.053 3.947 24 H 0.084 0.916 25 C -0.136 4.136 26 C -0.144 4.144 27 C 0.039 3.961 28 O -0.399 6.399 29 H 0.267 0.733 30 H -0.026 1.026 31 H -0.017 1.017 32 H 0.396 0.604 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.385 0.615 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.539 -17.648 2.376 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.094 0.906 9 C 0.170 3.830 10 N -0.365 5.365 11 C 0.397 3.603 12 O -0.514 6.514 13 N -0.352 5.352 14 C 0.056 3.944 15 C -0.144 4.144 16 C -0.105 4.105 17 C -0.147 4.147 18 C -0.120 4.120 19 C -0.191 4.191 20 C 0.044 3.956 21 O -0.315 6.315 22 C -0.022 4.022 23 C -0.006 4.006 24 H 0.102 0.898 25 C -0.174 4.174 26 C -0.181 4.181 27 C -0.037 4.037 28 O -0.319 6.319 29 H 0.076 0.924 30 H -0.008 1.008 31 H 0.001 0.999 32 H 0.232 0.768 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.242 0.758 40 H 0.085 0.915 41 H 0.144 0.856 42 H 0.108 0.892 43 H 0.129 0.871 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.089 0.911 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.047 -18.175 2.168 25.704 hybrid contribution -0.165 1.854 0.046 1.862 sum 17.881 -16.321 2.213 24.311 Atomic orbital electron populations 1.70149 1.08248 1.28400 1.50186 1.26015 0.95699 1.03645 0.94016 0.85268 0.77993 0.76848 0.79470 1.18677 1.21127 1.18597 1.21464 0.93828 0.90568 1.52536 0.90574 1.18254 0.87982 0.83566 0.93195 1.45281 1.10267 1.03756 1.77189 1.16238 0.84961 0.81560 0.77589 1.90845 1.15960 1.84410 1.60194 1.46982 1.06108 1.04425 1.77672 1.20053 1.01065 0.81087 0.92226 1.20732 0.95118 1.01587 0.96980 1.21312 0.96440 0.95752 0.96993 1.21544 0.99662 1.00530 0.93013 1.21381 0.93052 0.96370 1.01217 1.21677 1.00637 1.02137 0.94656 1.19020 0.88179 0.95794 0.92598 1.84806 1.40503 1.21979 1.84194 1.22201 0.80325 1.03379 0.96337 1.23466 0.93163 0.90781 0.93191 0.89820 1.23146 0.93326 1.01350 0.99559 1.23247 0.97272 0.98084 0.99546 1.23475 0.89348 0.92038 0.98852 1.88626 1.33177 1.32519 1.77590 0.92406 1.00765 0.99882 0.76796 0.86810 0.92169 0.82232 0.82275 0.83284 0.85934 0.75784 0.91529 0.85628 0.89181 0.87127 0.89987 0.88223 0.91082 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.98 43.10 29.54 68.60 2.03 45.13 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.55 -30.72 9.28 25.60 0.24 -30.48 16 8 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 9 C 0.29 17.02 5.43 85.63 0.46 17.49 16 10 N -0.71 -32.98 4.72 -482.30 -2.28 -35.25 16 11 C 0.70 30.85 7.40 179.05 1.32 32.18 16 12 O -0.63 -33.65 12.89 16.49 0.21 -33.43 16 13 N -0.62 -19.55 2.45 -844.18 -2.07 -21.62 16 14 C 0.18 5.07 5.34 85.63 0.46 5.52 16 15 C -0.14 -3.74 5.46 -19.77 -0.11 -3.85 16 16 C -0.09 -1.51 9.67 22.25 0.22 -1.29 16 17 C -0.13 -2.00 10.04 22.28 0.22 -1.78 16 18 C -0.10 -1.93 10.04 22.26 0.22 -1.71 16 19 C -0.17 -4.55 9.99 22.37 0.22 -4.33 16 20 C 0.09 2.86 6.68 22.51 0.15 3.01 16 21 O -0.50 -20.20 10.93 -72.01 -0.79 -20.99 16 22 C 0.10 2.24 4.92 86.38 0.43 2.67 16 23 C 0.05 1.12 3.78 31.06 0.12 1.24 16 24 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 25 C -0.14 -1.78 6.56 31.91 0.21 -1.57 16 26 C -0.14 -2.27 7.16 32.11 0.23 -2.04 16 27 C 0.04 1.02 7.78 72.65 0.57 1.58 16 28 O -0.40 -12.71 9.04 -148.98 -1.35 -14.06 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 31 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 32 H 0.40 16.20 5.44 -92.71 -0.50 15.69 16 33 H 0.11 2.23 7.99 -2.39 -0.02 2.21 16 34 H 0.06 2.24 6.88 -2.38 -0.02 2.22 16 35 H 0.16 1.55 8.04 -2.91 -0.02 1.53 16 36 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.38 16.22 7.66 -74.06 -0.57 15.66 16 40 H 0.07 1.63 6.35 -2.39 -0.02 1.62 16 41 H 0.13 1.75 8.05 -2.38 -0.02 1.73 16 42 H 0.09 1.02 7.85 -2.39 -0.02 1.00 16 43 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -81.71 382.63 1.38 -80.32 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: -0.08 Total: 39.88 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 5.42 Total: 17.43 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -4.06 Total: -114.28 kcal Atomic # 8 Polarization: -66.56 SS G_CDS: -1.92 Total: -68.48 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -81.71 1.38 -80.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.822 kcal (2) G-P(sol) polarization free energy of solvation -81.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.68 seconds