Wall clock time and date at job start Tue Mar 31 2020 23:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47492 * 300.00136 * 3 2 1 6 6 H 1.48500 * 109.47158 * 59.99845 * 3 2 1 7 7 C 1.37874 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99744 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00421 * 180.02562 * 10 9 7 12 12 O 1.21587 * 119.99854 * 355.05311 * 11 10 9 13 13 N 1.34778 * 120.00329 * 175.05838 * 11 10 9 14 14 C 1.47149 * 120.98455 * 5.84565 * 13 11 10 15 15 C 1.53291 * 108.38760 * 129.48865 * 14 13 11 16 16 O 1.42960 * 109.21837 * 52.30069 * 15 14 13 17 17 C 1.42964 * 114.17298 * 297.41969 * 16 15 14 18 18 C 1.47157 * 120.98046 * 185.86985 * 13 11 10 19 19 H 1.09000 * 109.68047 * 110.74904 * 18 13 11 20 20 C 1.53001 * 109.68107 * 350.23789 * 18 13 11 21 21 C 1.53003 * 109.46609 * 179.20541 * 20 18 13 22 22 H 1.08992 * 109.47351 * 306.87586 * 21 20 18 23 23 O 1.42898 * 109.47456 * 66.87844 * 21 20 18 24 24 C 1.50704 * 109.46746 * 186.87949 * 21 20 18 25 25 C 1.38236 * 119.99716 * 279.72532 * 24 21 20 26 26 C 1.38239 * 119.99954 * 179.78822 * 25 24 21 27 27 C 1.38235 * 119.99854 * 0.46580 * 26 25 24 28 28 C 1.38241 * 119.99850 * 359.76800 * 27 26 25 29 29 C 1.38235 * 120.00056 * 100.00068 * 24 21 20 30 30 H 0.97001 * 119.99677 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46751 * 60.00192 * 9 7 2 32 32 H 1.08994 * 109.47281 * 300.00140 * 9 7 2 33 33 H 0.97010 * 119.99890 * 0.02562 * 10 9 7 34 34 H 1.08996 * 109.68259 * 249.21700 * 14 13 11 35 35 H 1.09008 * 109.67622 * 9.76588 * 14 13 11 36 36 H 1.08993 * 109.51296 * 172.22610 * 15 14 13 37 37 H 1.09004 * 109.51267 * 292.33300 * 15 14 13 38 38 H 1.09005 * 109.50984 * 302.66060 * 17 16 15 39 39 H 1.08996 * 109.50961 * 182.50554 * 17 16 15 40 40 H 1.08996 * 109.47298 * 59.20573 * 20 18 13 41 41 H 1.09003 * 109.46981 * 299.19795 * 20 18 13 42 42 H 0.96703 * 113.99794 * 59.99726 * 23 21 20 43 43 H 1.07997 * 120.00178 * 0.02562 * 25 24 21 44 44 H 1.07999 * 120.00558 * 180.24846 * 26 25 24 45 45 H 1.07994 * 120.00180 * 179.78912 * 27 26 25 46 46 H 1.08006 * 119.99865 * 180.02562 * 28 27 26 47 47 H 1.07997 * 119.99853 * 359.97438 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7539 -4.8833 -0.0025 12 8 0.5623 -5.1069 0.0886 13 7 2.6256 -5.9062 -0.1042 14 6 4.0777 -5.6685 -0.0872 15 6 4.7091 -6.6063 0.9481 16 8 4.2882 -7.9473 0.6868 17 6 2.8784 -8.1523 0.8065 18 6 2.1533 -7.2936 -0.2360 19 1 2.3764 -7.6638 -1.2367 20 6 0.6442 -7.3498 0.0096 21 6 0.1552 -8.7909 -0.1481 22 1 0.4794 -9.1811 -1.1128 23 8 0.7003 -9.5962 0.8990 24 6 -1.3497 -8.8217 -0.0740 25 6 -1.9820 -8.7837 1.1547 26 6 -3.3625 -8.8074 1.2226 27 6 -4.1105 -8.8789 0.0623 28 6 -3.4780 -8.9218 -1.1662 29 6 -2.0976 -8.8936 -1.2343 30 1 -0.4850 0.8401 -0.0004 31 1 0.6241 -2.5566 -0.8903 32 1 0.6248 -2.5571 0.8896 33 1 3.1568 -3.4353 -0.0021 34 1 4.4951 -5.8753 -1.0726 35 1 4.2769 -4.6323 0.1864 36 1 5.7952 -6.5457 0.8796 37 1 4.3902 -6.3122 1.9481 38 1 2.5522 -7.8643 1.8059 39 1 2.6477 -9.2038 0.6362 40 1 0.1346 -6.7121 -0.7127 41 1 0.4272 -7.0009 1.0192 42 1 0.4524 -9.3064 1.7876 43 1 -1.3976 -8.7315 2.0614 44 1 -3.8567 -8.7737 2.1823 45 1 -5.1889 -8.9009 0.1154 46 1 -4.0623 -8.9772 -2.0728 47 1 -1.6034 -8.9273 -2.1940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:29 Heat of formation + Delta-G solvation = -77.336248 kcal Electronic energy + Delta-G solvation = -29528.370255 eV Core-core repulsion = 25483.988881 eV Total energy + Delta-G solvation = -4044.381374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = -3.95 seconds Orbital eigenvalues (eV) -40.59279 -39.51399 -38.12249 -37.17023 -34.66772 -34.34838 -32.94997 -31.98429 -31.43419 -30.91507 -28.87838 -27.41836 -26.49402 -24.57676 -22.98103 -22.72262 -22.50243 -21.35829 -20.98542 -19.34111 -18.11767 -17.47139 -16.50797 -16.36802 -16.14824 -15.79368 -15.52609 -15.39779 -15.16494 -14.92596 -14.78272 -14.60150 -14.18263 -14.00363 -13.44893 -13.37007 -13.28296 -13.06202 -12.82198 -12.39609 -12.11647 -11.98267 -11.85224 -11.70686 -11.59187 -11.25194 -11.12430 -10.97422 -10.92179 -10.89463 -10.76206 -10.30098 -10.16539 -10.03623 -9.38338 -8.96914 -8.89578 -8.75502 -8.60201 -8.27921 -7.77128 -6.18698 -4.25386 1.28049 1.35338 2.99642 3.21563 3.29042 3.31906 3.69724 3.79877 3.82141 4.27382 4.34321 4.52457 4.63771 4.75396 4.79732 4.91549 5.00082 5.02047 5.05021 5.13705 5.15767 5.17767 5.26471 5.33162 5.38551 5.48383 5.55227 5.60041 5.68736 5.84235 5.89785 5.93603 5.97304 6.26273 6.38007 6.44989 6.46010 6.54346 6.81085 6.93177 7.06831 7.10768 7.44071 7.47814 7.50683 7.53013 7.80239 7.98285 8.71499 8.84606 9.26929 9.43703 10.91494 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.003396 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.042135 B = 8243.542217 C =10585.764301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.697 3.303 12 O -0.589 6.589 13 N -0.640 5.640 14 C 0.079 3.921 15 C 0.047 3.953 16 O -0.384 6.384 17 C 0.047 3.953 18 C 0.139 3.861 19 H 0.071 0.929 20 C -0.131 4.131 21 C 0.135 3.865 22 H 0.105 0.895 23 O -0.558 6.558 24 C -0.103 4.103 25 C -0.109 4.109 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.110 4.110 30 H 0.265 0.735 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.384 0.616 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.373 0.627 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -19.428 0.850 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.399 3.601 12 O -0.468 6.468 13 N -0.381 5.381 14 C -0.045 4.045 15 C -0.031 4.031 16 O -0.302 6.302 17 C -0.031 4.031 18 C 0.034 3.966 19 H 0.089 0.911 20 C -0.168 4.168 21 C 0.076 3.924 22 H 0.123 0.877 23 O -0.364 6.364 24 C -0.103 4.103 25 C -0.127 4.127 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.137 4.137 29 C -0.128 4.128 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.219 0.781 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.222 0.778 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.069 -19.850 0.350 19.882 hybrid contribution 0.404 1.831 0.478 1.935 sum 1.473 -18.019 0.828 18.098 Atomic orbital electron populations 1.69989 1.06085 1.27173 1.48979 1.24937 0.94904 0.99395 0.94720 0.86369 0.79814 0.82994 0.77772 1.19658 1.20778 1.20791 1.21244 0.93235 0.90446 1.53098 0.92012 1.18979 0.87768 0.81093 0.97551 1.45974 1.10835 1.04532 1.76946 1.16110 0.84823 0.80886 0.78262 1.90873 1.14444 1.82908 1.58605 1.47409 1.05132 1.05863 1.79691 1.22259 0.81362 1.00580 1.00341 1.22945 0.99737 0.82891 0.97509 1.87953 1.23490 1.27525 1.91255 1.23520 0.80047 1.01884 0.97599 1.21657 0.94961 0.80783 0.99173 0.91105 1.22837 0.93493 0.94034 1.06470 1.21182 0.87725 0.91834 0.91639 0.87730 1.86543 1.74638 1.57605 1.17646 1.20449 0.96429 0.99641 0.93778 1.20830 0.94732 1.00088 0.97048 1.21099 0.93933 1.00039 0.98450 1.21142 0.99797 1.00530 0.92717 1.21127 0.94589 1.00147 0.97790 1.20981 0.94031 0.99993 0.97803 0.92506 0.95840 0.95693 0.78136 0.90956 0.89236 0.88040 0.92773 0.93282 0.85547 0.86910 0.90166 0.77844 0.86417 0.86116 0.86231 0.86093 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.93 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.05 5.43 -5.19 -0.03 7.03 16 10 N -0.73 -15.48 5.46 -66.42 -0.36 -15.84 16 11 C 0.70 14.04 8.23 -86.92 -0.72 13.32 16 12 O -0.59 -13.49 11.90 5.29 0.06 -13.43 16 13 N -0.64 -9.98 3.02 -170.43 -0.51 -10.49 16 14 C 0.08 0.98 6.56 -3.54 -0.02 0.95 16 15 C 0.05 0.52 6.99 37.31 0.26 0.78 16 16 O -0.38 -4.88 10.74 -35.23 -0.38 -5.26 16 17 C 0.05 0.56 5.17 37.31 0.19 0.75 16 18 C 0.14 1.88 3.18 -67.42 -0.21 1.66 16 19 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 20 C -0.13 -1.84 2.95 -26.73 -0.08 -1.92 16 21 C 0.14 1.52 3.12 -27.88 -0.09 1.43 16 22 H 0.10 1.10 8.00 -51.93 -0.42 0.68 16 23 O -0.56 -5.64 9.91 -35.23 -0.35 -5.99 16 24 C -0.10 -1.24 4.97 -104.62 -0.52 -1.76 16 25 C -0.11 -1.26 9.32 -39.58 -0.37 -1.63 16 26 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 27 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 28 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 29 C -0.11 -1.29 9.67 -39.58 -0.38 -1.67 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.38 7.11 5.89 -40.82 -0.24 6.87 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.07 5.79 -51.92 -0.30 0.77 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.13 1.41 5.95 -51.93 -0.31 1.10 16 40 H 0.11 1.98 6.20 -51.93 -0.32 1.66 16 41 H 0.08 1.28 7.32 -51.93 -0.38 0.90 16 42 H 0.37 2.96 7.50 45.56 0.34 3.30 16 43 H 0.12 1.13 6.78 -52.49 -0.36 0.77 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 47 H 0.12 1.22 8.04 -52.49 -0.42 0.79 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -32.90 374.18 -9.93 -42.83 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.17 Total: 11.47 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -3.58 Total: 0.58 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.14 Total: -51.53 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.66 Total: -24.68 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.90 -9.93 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.507 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.94 seconds