Wall clock time and date at job start Tue Mar 31 2020 23:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47492 * 300.00136 * 3 2 1 6 6 H 1.48500 * 109.47158 * 59.99845 * 3 2 1 7 7 C 1.37874 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99744 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00421 * 180.02562 * 10 9 7 12 12 O 1.21587 * 119.99854 * 355.05311 * 11 10 9 13 13 N 1.34778 * 120.00329 * 175.05838 * 11 10 9 14 14 C 1.47149 * 120.98455 * 5.84565 * 13 11 10 15 15 C 1.53291 * 108.38760 * 129.48865 * 14 13 11 16 16 O 1.42960 * 109.21837 * 52.30069 * 15 14 13 17 17 C 1.42964 * 114.17298 * 297.41969 * 16 15 14 18 18 C 1.47157 * 120.98046 * 185.86985 * 13 11 10 19 19 H 1.09000 * 109.68047 * 110.74904 * 18 13 11 20 20 C 1.53001 * 109.68107 * 350.23789 * 18 13 11 21 21 C 1.53003 * 109.46609 * 179.20541 * 20 18 13 22 22 H 1.08992 * 109.47351 * 306.87586 * 21 20 18 23 23 O 1.42898 * 109.47456 * 66.87844 * 21 20 18 24 24 C 1.50704 * 109.46746 * 186.87949 * 21 20 18 25 25 C 1.38236 * 119.99716 * 279.72532 * 24 21 20 26 26 C 1.38239 * 119.99954 * 179.78822 * 25 24 21 27 27 C 1.38235 * 119.99854 * 0.46580 * 26 25 24 28 28 C 1.38241 * 119.99850 * 359.76800 * 27 26 25 29 29 C 1.38235 * 120.00056 * 100.00068 * 24 21 20 30 30 H 0.97001 * 119.99677 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46751 * 60.00192 * 9 7 2 32 32 H 1.08994 * 109.47281 * 300.00140 * 9 7 2 33 33 H 0.97010 * 119.99890 * 0.02562 * 10 9 7 34 34 H 1.08996 * 109.68259 * 249.21700 * 14 13 11 35 35 H 1.09008 * 109.67622 * 9.76588 * 14 13 11 36 36 H 1.08993 * 109.51296 * 172.22610 * 15 14 13 37 37 H 1.09004 * 109.51267 * 292.33300 * 15 14 13 38 38 H 1.09005 * 109.50984 * 302.66060 * 17 16 15 39 39 H 1.08996 * 109.50961 * 182.50554 * 17 16 15 40 40 H 1.08996 * 109.47298 * 59.20573 * 20 18 13 41 41 H 1.09003 * 109.46981 * 299.19795 * 20 18 13 42 42 H 0.96703 * 113.99794 * 59.99726 * 23 21 20 43 43 H 1.07997 * 120.00178 * 0.02562 * 25 24 21 44 44 H 1.07999 * 120.00558 * 180.24846 * 26 25 24 45 45 H 1.07994 * 120.00180 * 179.78912 * 27 26 25 46 46 H 1.08006 * 119.99865 * 180.02562 * 28 27 26 47 47 H 1.07997 * 119.99853 * 359.97438 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7539 -4.8833 -0.0025 12 8 0.5623 -5.1069 0.0886 13 7 2.6256 -5.9062 -0.1042 14 6 4.0777 -5.6685 -0.0872 15 6 4.7091 -6.6063 0.9481 16 8 4.2882 -7.9473 0.6868 17 6 2.8784 -8.1523 0.8065 18 6 2.1533 -7.2936 -0.2360 19 1 2.3764 -7.6638 -1.2367 20 6 0.6442 -7.3498 0.0096 21 6 0.1552 -8.7909 -0.1481 22 1 0.4794 -9.1811 -1.1128 23 8 0.7003 -9.5962 0.8990 24 6 -1.3497 -8.8217 -0.0740 25 6 -1.9820 -8.7837 1.1547 26 6 -3.3625 -8.8074 1.2226 27 6 -4.1105 -8.8789 0.0623 28 6 -3.4780 -8.9218 -1.1662 29 6 -2.0976 -8.8936 -1.2343 30 1 -0.4850 0.8401 -0.0004 31 1 0.6241 -2.5566 -0.8903 32 1 0.6248 -2.5571 0.8896 33 1 3.1568 -3.4353 -0.0021 34 1 4.4951 -5.8753 -1.0726 35 1 4.2769 -4.6323 0.1864 36 1 5.7952 -6.5457 0.8796 37 1 4.3902 -6.3122 1.9481 38 1 2.5522 -7.8643 1.8059 39 1 2.6477 -9.2038 0.6362 40 1 0.1346 -6.7121 -0.7127 41 1 0.4272 -7.0009 1.0192 42 1 0.4524 -9.3064 1.7876 43 1 -1.3976 -8.7315 2.0614 44 1 -3.8567 -8.7737 2.1823 45 1 -5.1889 -8.9009 0.1154 46 1 -4.0623 -8.9772 -2.0728 47 1 -1.6034 -8.9273 -2.1940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:19 Heat of formation + Delta-G solvation = -100.466227 kcal Electronic energy + Delta-G solvation = -29529.373247 eV Core-core repulsion = 25483.988881 eV Total energy + Delta-G solvation = -4045.384366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = -0.51 seconds Orbital eigenvalues (eV) -41.86654 -40.47401 -39.41020 -38.07138 -36.36278 -35.73471 -34.62717 -33.37655 -32.40973 -31.76030 -30.09472 -29.05601 -27.81908 -25.61194 -24.78794 -23.69579 -23.44179 -22.75879 -21.93769 -20.88120 -19.44637 -18.49131 -18.08256 -17.60833 -17.37794 -16.96234 -16.77279 -16.56659 -16.42268 -16.09073 -15.97149 -15.85969 -15.36853 -15.11471 -14.80719 -14.64514 -14.35333 -14.24410 -14.05200 -13.83075 -13.74787 -13.37375 -12.93729 -12.88732 -12.84490 -12.75346 -12.55527 -12.25364 -12.15458 -12.09843 -11.89526 -11.80910 -11.44005 -11.22214 -11.01328 -10.81630 -10.25397 -9.87916 -9.83414 -9.61989 -9.33573 -8.29785 -6.46152 0.40252 0.48524 1.42380 1.43759 1.56301 1.65259 2.19457 2.36939 2.81432 2.88170 3.05496 3.10675 3.49408 3.60546 3.75815 3.89515 3.94561 4.06026 4.08937 4.12090 4.19175 4.23937 4.27079 4.36951 4.39893 4.59806 4.61363 4.70212 4.76494 4.88628 4.96870 5.03561 5.06681 5.09421 5.17507 5.26219 5.27973 5.45380 5.53398 5.59565 5.63557 5.65553 5.70111 5.84328 6.06598 6.09518 6.15231 6.65630 6.67206 7.15194 7.24356 7.69788 8.82605 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.003396 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.042135 B = 8243.542217 C =10585.764301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.289 3.711 10 N -0.726 5.726 11 C 0.693 3.307 12 O -0.623 6.623 13 N -0.633 5.633 14 C 0.071 3.929 15 C 0.050 3.950 16 O -0.390 6.390 17 C 0.058 3.942 18 C 0.134 3.866 19 H 0.082 0.918 20 C -0.115 4.115 21 C 0.152 3.848 22 H 0.116 0.884 23 O -0.554 6.554 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.133 4.133 28 C -0.130 4.130 29 C -0.128 4.128 30 H 0.269 0.731 31 H -0.016 1.016 32 H -0.015 1.015 33 H 0.399 0.601 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.140 0.860 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.383 0.617 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -19.963 0.925 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.099 0.901 9 C 0.166 3.834 10 N -0.382 5.382 11 C 0.394 3.606 12 O -0.505 6.505 13 N -0.372 5.372 14 C -0.051 4.051 15 C -0.028 4.028 16 O -0.309 6.309 17 C -0.019 4.019 18 C 0.030 3.970 19 H 0.100 0.900 20 C -0.153 4.153 21 C 0.093 3.907 22 H 0.134 0.866 23 O -0.362 6.362 24 C -0.122 4.122 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.151 4.151 28 C -0.148 4.148 29 C -0.146 4.146 30 H 0.077 0.923 31 H 0.002 0.998 32 H 0.003 0.997 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.157 0.843 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.233 0.767 43 H 0.149 0.851 44 H 0.157 0.843 45 H 0.159 0.841 46 H 0.158 0.842 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.408 -20.447 0.432 20.733 hybrid contribution -0.346 1.917 0.459 2.002 sum 3.062 -18.530 0.891 18.802 Atomic orbital electron populations 1.70148 1.08248 1.28473 1.50002 1.26033 0.95748 1.03776 0.93845 0.85123 0.79107 0.77366 0.77692 1.17629 1.20447 1.20455 1.21607 0.94196 0.90535 1.52839 0.90059 1.18363 0.87994 0.83269 0.93800 1.45588 1.10772 1.04064 1.77782 1.16288 0.84942 0.81294 0.78029 1.90881 1.16361 1.83552 1.59753 1.47434 1.06168 1.05488 1.78142 1.22573 0.79079 1.01490 1.02003 1.23083 1.01445 0.81669 0.96587 1.87954 1.23349 1.28361 1.91194 1.23435 0.79808 1.01982 0.96647 1.21894 0.94736 0.79826 1.00513 0.89997 1.22495 0.93731 0.95339 1.03696 1.20923 0.87427 0.89893 0.92461 0.86649 1.86513 1.74486 1.57081 1.18138 1.20647 0.96885 1.00411 0.94282 1.21129 0.95435 1.00196 0.97549 1.21440 0.93997 0.99796 0.99581 1.21502 1.01085 0.99874 0.92590 1.21460 0.94638 0.99797 0.98863 1.21273 0.94722 1.00250 0.98318 0.92262 0.99797 0.99719 0.76368 0.89265 0.88818 0.84741 0.93141 0.93531 0.84265 0.90803 0.92543 0.76677 0.85117 0.84307 0.84088 0.84155 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.98 42.10 29.54 68.60 2.03 44.13 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.55 -30.13 9.28 25.60 0.24 -29.89 16 8 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 9 C 0.29 15.99 5.43 85.63 0.47 16.46 16 10 N -0.73 -31.60 5.46 -482.31 -2.63 -34.23 16 11 C 0.69 28.77 8.23 179.06 1.47 30.25 16 12 O -0.62 -30.34 11.90 -3.99 -0.05 -30.38 16 13 N -0.63 -19.49 3.02 -811.40 -2.45 -21.94 16 14 C 0.07 1.62 6.56 86.35 0.57 2.19 16 15 C 0.05 0.96 6.99 72.08 0.50 1.46 16 16 O -0.39 -8.84 10.74 -148.98 -1.60 -10.44 16 17 C 0.06 1.30 5.17 72.08 0.37 1.67 16 18 C 0.13 3.54 3.18 44.96 0.14 3.69 16 19 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 20 C -0.11 -3.33 2.95 30.60 0.09 -3.24 16 21 C 0.15 3.40 3.12 29.85 0.09 3.50 16 22 H 0.12 2.33 8.00 -2.39 -0.02 2.31 16 23 O -0.55 -10.57 9.91 -148.98 -1.48 -12.05 16 24 C -0.12 -2.98 4.97 -19.86 -0.10 -3.08 16 25 C -0.13 -2.92 9.32 22.27 0.21 -2.72 16 26 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16 27 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 28 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 29 C -0.13 -3.02 9.67 22.27 0.22 -2.80 16 30 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 31 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 32 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 33 H 0.40 14.62 5.89 -92.70 -0.55 14.07 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 2.05 5.79 -2.38 -0.01 2.04 16 36 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.14 2.78 5.95 -2.39 -0.01 2.77 16 40 H 0.07 2.77 6.20 -2.39 -0.01 2.76 16 41 H 0.06 1.89 7.32 -2.39 -0.02 1.87 16 42 H 0.38 5.74 7.50 -74.05 -0.56 5.18 16 43 H 0.13 2.53 6.78 -2.91 -0.02 2.51 16 44 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 45 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 46 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 47 H 0.13 2.68 8.04 -2.91 -0.02 2.65 16 Total: -1.00 -73.96 374.18 -0.59 -74.56 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.10 Total: 35.67 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.40 Total: 10.43 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -4.80 Total: -111.92 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -3.12 Total: -52.87 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -73.96 -0.59 -74.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.909 kcal (2) G-P(sol) polarization free energy of solvation -73.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.51 seconds