Wall clock time and date at job start Tue Mar 31 2020 23:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86789 * 120.00275 * 2 1 4 4 H 1.48496 * 109.47409 * 269.99980 * 3 2 1 5 5 H 1.48503 * 109.47229 * 29.99947 * 3 2 1 6 6 H 1.48504 * 109.47072 * 150.00056 * 3 2 1 7 7 C 1.37884 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00127 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47127 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00014 * 180.02562 * 10 9 7 12 12 O 1.21584 * 120.00226 * 5.02568 * 11 10 9 13 13 N 1.34775 * 120.00126 * 185.03720 * 11 10 9 14 14 C 1.47157 * 120.98051 * 354.63869 * 13 11 10 15 15 C 1.53293 * 108.38417 * 230.56324 * 14 13 11 16 16 O 1.42964 * 109.22355 * 307.69754 * 15 14 13 17 17 C 1.42960 * 114.16602 * 62.58203 * 16 15 14 18 18 C 1.47153 * 120.98494 * 174.66894 * 13 11 10 19 19 H 1.09002 * 109.67705 * 249.15997 * 18 13 11 20 20 C 1.52999 * 109.68141 * 9.71019 * 18 13 11 21 21 C 1.52998 * 109.46929 * 179.37934 * 20 18 13 22 22 H 1.08991 * 109.47577 * 304.34775 * 21 20 18 23 23 O 1.42894 * 109.46935 * 64.35400 * 21 20 18 24 24 C 1.50705 * 109.47012 * 184.34742 * 21 20 18 25 25 C 1.38238 * 120.00288 * 279.73554 * 24 21 20 26 26 C 1.38226 * 120.00022 * 179.81240 * 25 24 21 27 27 C 1.38240 * 120.00170 * 0.40807 * 26 25 24 28 28 C 1.38234 * 119.99943 * 359.82043 * 27 26 25 29 29 C 1.38237 * 119.99889 * 359.97438 * 28 27 26 30 30 H 0.97004 * 120.00039 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47258 * 59.99686 * 9 7 2 32 32 H 1.08998 * 109.47009 * 299.99975 * 9 7 2 33 33 H 0.96997 * 120.00244 * 359.97438 * 10 9 7 34 34 H 1.09000 * 109.68120 * 110.83921 * 14 13 11 35 35 H 1.08997 * 109.71516 * 350.30057 * 14 13 11 36 36 H 1.08999 * 109.51409 * 187.77522 * 15 14 13 37 37 H 1.09001 * 109.51571 * 67.62373 * 15 14 13 38 38 H 1.08994 * 109.51760 * 57.34479 * 17 16 15 39 39 H 1.09000 * 109.51320 * 177.49717 * 17 16 15 40 40 H 1.09003 * 109.47216 * 299.38565 * 20 18 13 41 41 H 1.09000 * 109.46727 * 59.38078 * 20 18 13 42 42 H 0.96703 * 114.00718 * 64.40051 * 23 21 20 43 43 H 1.08001 * 119.99810 * 359.97438 * 25 24 21 44 44 H 1.07999 * 120.00356 * 180.20793 * 26 25 24 45 45 H 1.07998 * 120.00255 * 179.78940 * 27 26 25 46 46 H 1.08002 * 120.00271 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.00193 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4399 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2028 -3.6127 -0.0015 11 6 1.7535 -4.8834 -0.0029 12 8 0.5621 -5.1069 -0.0966 13 7 2.6249 -5.9064 0.0998 14 6 4.0770 -5.6678 0.0969 15 6 4.7177 -6.5977 -0.9398 16 8 4.2955 -7.9409 -0.6919 17 6 2.8870 -8.1457 -0.8251 18 6 2.1525 -7.2951 0.2175 19 1 2.3678 -7.6726 1.2171 20 6 0.6455 -7.3503 -0.0414 21 6 0.1623 -8.7980 0.0669 22 1 0.7347 -9.4243 -0.6171 23 8 0.3464 -9.2627 1.4056 24 6 -1.2997 -8.8677 -0.2923 25 6 -2.2582 -8.5197 0.6410 26 6 -3.5989 -8.5800 0.3101 27 6 -3.9816 -8.9963 -0.9513 28 6 -3.0233 -9.3488 -1.8831 29 6 -1.6823 -9.2845 -1.5536 30 1 -0.4850 0.8401 -0.0004 31 1 0.6245 -2.5563 -0.8920 32 1 0.6239 -2.5575 0.8880 33 1 3.1565 -3.4356 -0.0010 34 1 4.4861 -5.8815 1.0844 35 1 4.2785 -4.6297 -0.1671 36 1 5.8032 -6.5370 -0.8617 37 1 4.4066 -6.2970 -1.9402 38 1 2.5691 -7.8507 -1.8250 39 1 2.6553 -9.1986 -0.6645 40 1 0.1274 -6.7380 0.6967 41 1 0.4345 -6.9706 -1.0410 42 1 -0.1872 -8.7937 2.0617 43 1 -1.9594 -8.1982 1.6278 44 1 -4.3477 -8.3049 1.0382 45 1 -5.0293 -9.0467 -1.2087 46 1 -3.3222 -9.6745 -2.8685 47 1 -0.9336 -9.5603 -2.2815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:43 Heat of formation + Delta-G solvation = -78.807895 kcal Electronic energy + Delta-G solvation = -29474.266910 eV Core-core repulsion = 25429.821720 eV Total energy + Delta-G solvation = -4044.445190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 17.25 seconds Orbital eigenvalues (eV) -40.58900 -39.52760 -38.15372 -37.10040 -34.68586 -34.36931 -33.07499 -32.04031 -31.34887 -30.91982 -28.88283 -27.35934 -26.48428 -24.82844 -22.92560 -22.79621 -22.51458 -21.43561 -20.83116 -19.35801 -18.10653 -17.46083 -16.64781 -16.19716 -16.13165 -15.92429 -15.59559 -15.43164 -15.09708 -14.91182 -14.80187 -14.62177 -14.12079 -13.95242 -13.49201 -13.41254 -13.33243 -13.05480 -12.85289 -12.58956 -12.07809 -11.97966 -11.87318 -11.69786 -11.53379 -11.30851 -11.05327 -10.99873 -10.95136 -10.90390 -10.87496 -10.30001 -10.19257 -10.07271 -9.40107 -8.98447 -8.92800 -8.75449 -8.59111 -8.29040 -7.77458 -6.18580 -4.25304 1.26731 1.34191 2.98368 3.22318 3.28832 3.31097 3.65572 3.75834 3.80761 4.27518 4.39232 4.48301 4.61500 4.73705 4.77243 4.90656 4.95113 5.01238 5.02118 5.10701 5.15588 5.17720 5.23455 5.26560 5.38900 5.45126 5.50145 5.55644 5.68393 5.69558 5.82691 5.89482 5.94773 6.28517 6.36841 6.43866 6.44327 6.53898 6.80317 6.91857 7.01352 7.06308 7.47000 7.49851 7.52337 7.53005 7.80124 7.98330 8.71214 8.84523 9.26748 9.43624 10.91568 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.003355 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.474711 B = 8344.960676 C =10514.936426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.268 3.732 10 N -0.729 5.729 11 C 0.698 3.302 12 O -0.588 6.588 13 N -0.640 5.640 14 C 0.078 3.922 15 C 0.047 3.953 16 O -0.380 6.380 17 C 0.048 3.952 18 C 0.139 3.861 19 H 0.080 0.920 20 C -0.129 4.129 21 C 0.134 3.866 22 H 0.102 0.898 23 O -0.558 6.558 24 C -0.105 4.105 25 C -0.108 4.108 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.112 4.112 30 H 0.266 0.734 31 H 0.025 0.975 32 H 0.024 0.976 33 H 0.384 0.616 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.374 0.626 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -19.286 -1.177 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.383 5.383 11 C 0.399 3.601 12 O -0.468 6.468 13 N -0.381 5.381 14 C -0.046 4.046 15 C -0.030 4.030 16 O -0.298 6.298 17 C -0.030 4.030 18 C 0.035 3.965 19 H 0.098 0.902 20 C -0.166 4.166 21 C 0.075 3.925 22 H 0.119 0.881 23 O -0.364 6.364 24 C -0.105 4.105 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.142 4.142 28 C -0.137 4.137 29 C -0.130 4.130 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.219 0.781 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.223 0.777 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.267 -19.791 -1.469 19.886 hybrid contribution 0.302 1.823 0.086 1.850 sum 1.569 -17.968 -1.383 18.089 Atomic orbital electron populations 1.69975 1.06089 1.27289 1.48862 1.24935 0.94906 0.99384 0.94712 0.86420 0.79625 0.82671 0.78220 1.20468 1.20982 1.19762 1.21206 0.93197 0.90459 1.53246 0.92068 1.18972 0.87761 0.81070 0.97541 1.45971 1.10828 1.04521 1.76977 1.16101 0.84824 0.80875 0.78256 1.90880 1.14446 1.82921 1.58560 1.47403 1.05126 1.05758 1.79783 1.22259 0.81359 1.00609 1.00340 1.22981 0.99797 0.82539 0.97714 1.87937 1.22805 1.27672 1.91425 1.23190 0.81104 1.00494 0.98192 1.21590 0.94806 0.80618 0.99474 0.90176 1.22775 0.93510 0.93784 1.06575 1.21198 0.90811 0.96269 0.84229 0.88065 1.86555 1.69454 1.63842 1.16545 1.20496 0.96303 0.99014 0.94725 1.20863 0.92958 0.99451 0.99331 1.21115 0.95937 0.99472 0.96840 1.21147 0.99427 0.99727 0.93887 1.21115 0.93050 1.00210 0.99361 1.20965 0.96232 0.99925 0.95882 0.92450 0.95697 0.95850 0.78144 0.90857 0.89145 0.87815 0.92613 0.92752 0.87844 0.87696 0.89577 0.77724 0.86221 0.86009 0.86206 0.86120 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.61 9.28 -34.44 -0.32 -14.92 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.27 7.05 5.43 -5.20 -0.03 7.02 16 10 N -0.73 -15.44 5.46 -66.42 -0.36 -15.80 16 11 C 0.70 14.02 8.23 -86.92 -0.72 13.30 16 12 O -0.59 -13.47 11.90 5.29 0.06 -13.40 16 13 N -0.64 -9.97 3.02 -170.43 -0.51 -10.48 16 14 C 0.08 0.96 6.57 -3.53 -0.02 0.94 16 15 C 0.05 0.51 6.98 37.31 0.26 0.77 16 16 O -0.38 -4.74 10.74 -35.23 -0.38 -5.12 16 17 C 0.05 0.57 5.70 37.31 0.21 0.78 16 18 C 0.14 1.91 3.09 -67.42 -0.21 1.70 16 19 H 0.08 1.11 7.82 -51.93 -0.41 0.70 16 20 C -0.13 -1.84 2.86 -26.73 -0.08 -1.92 16 21 C 0.13 1.57 3.01 -27.88 -0.08 1.48 16 22 H 0.10 1.06 6.28 -51.93 -0.33 0.73 16 23 O -0.56 -6.41 12.75 -35.23 -0.45 -6.86 16 24 C -0.11 -1.28 4.97 -104.62 -0.52 -1.80 16 25 C -0.11 -1.29 9.30 -39.59 -0.37 -1.66 16 26 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 27 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 28 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 29 C -0.11 -1.28 9.67 -39.58 -0.38 -1.66 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.38 7.07 5.88 -40.82 -0.24 6.83 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.07 5.78 -51.93 -0.30 0.77 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.06 6.82 -51.93 -0.35 0.70 16 40 H 0.10 1.80 6.31 -51.93 -0.33 1.48 16 41 H 0.09 1.44 7.24 -51.93 -0.38 1.06 16 42 H 0.37 3.48 7.35 45.56 0.33 3.82 16 43 H 0.12 1.23 6.71 -52.49 -0.35 0.88 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.12 1.14 8.04 -52.48 -0.42 0.72 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -33.09 375.85 -9.91 -43.01 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.11 Total: 11.85 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -3.54 Total: 0.63 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.14 Total: -51.42 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.76 Total: -25.38 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.09 -9.91 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.800 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.25 seconds