Wall clock time and date at job start Tue Mar 31 2020 23:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86789 * 120.00275 * 2 1 4 4 H 1.48496 * 109.47409 * 269.99980 * 3 2 1 5 5 H 1.48503 * 109.47229 * 29.99947 * 3 2 1 6 6 H 1.48504 * 109.47072 * 150.00056 * 3 2 1 7 7 C 1.37884 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00127 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47127 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00014 * 180.02562 * 10 9 7 12 12 O 1.21584 * 120.00226 * 5.02568 * 11 10 9 13 13 N 1.34775 * 120.00126 * 185.03720 * 11 10 9 14 14 C 1.47157 * 120.98051 * 354.63869 * 13 11 10 15 15 C 1.53293 * 108.38417 * 230.56324 * 14 13 11 16 16 O 1.42964 * 109.22355 * 307.69754 * 15 14 13 17 17 C 1.42960 * 114.16602 * 62.58203 * 16 15 14 18 18 C 1.47153 * 120.98494 * 174.66894 * 13 11 10 19 19 H 1.09002 * 109.67705 * 249.15997 * 18 13 11 20 20 C 1.52999 * 109.68141 * 9.71019 * 18 13 11 21 21 C 1.52998 * 109.46929 * 179.37934 * 20 18 13 22 22 H 1.08991 * 109.47577 * 304.34775 * 21 20 18 23 23 O 1.42894 * 109.46935 * 64.35400 * 21 20 18 24 24 C 1.50705 * 109.47012 * 184.34742 * 21 20 18 25 25 C 1.38238 * 120.00288 * 279.73554 * 24 21 20 26 26 C 1.38226 * 120.00022 * 179.81240 * 25 24 21 27 27 C 1.38240 * 120.00170 * 0.40807 * 26 25 24 28 28 C 1.38234 * 119.99943 * 359.82043 * 27 26 25 29 29 C 1.38237 * 119.99889 * 359.97438 * 28 27 26 30 30 H 0.97004 * 120.00039 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47258 * 59.99686 * 9 7 2 32 32 H 1.08998 * 109.47009 * 299.99975 * 9 7 2 33 33 H 0.96997 * 120.00244 * 359.97438 * 10 9 7 34 34 H 1.09000 * 109.68120 * 110.83921 * 14 13 11 35 35 H 1.08997 * 109.71516 * 350.30057 * 14 13 11 36 36 H 1.08999 * 109.51409 * 187.77522 * 15 14 13 37 37 H 1.09001 * 109.51571 * 67.62373 * 15 14 13 38 38 H 1.08994 * 109.51760 * 57.34479 * 17 16 15 39 39 H 1.09000 * 109.51320 * 177.49717 * 17 16 15 40 40 H 1.09003 * 109.47216 * 299.38565 * 20 18 13 41 41 H 1.09000 * 109.46727 * 59.38078 * 20 18 13 42 42 H 0.96703 * 114.00718 * 64.40051 * 23 21 20 43 43 H 1.08001 * 119.99810 * 359.97438 * 25 24 21 44 44 H 1.07999 * 120.00356 * 180.20793 * 26 25 24 45 45 H 1.07998 * 120.00255 * 179.78940 * 27 26 25 46 46 H 1.08002 * 120.00271 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.00193 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4399 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2028 -3.6127 -0.0015 11 6 1.7535 -4.8834 -0.0029 12 8 0.5621 -5.1069 -0.0966 13 7 2.6249 -5.9064 0.0998 14 6 4.0770 -5.6678 0.0969 15 6 4.7177 -6.5977 -0.9398 16 8 4.2955 -7.9409 -0.6919 17 6 2.8870 -8.1457 -0.8251 18 6 2.1525 -7.2951 0.2175 19 1 2.3678 -7.6726 1.2171 20 6 0.6455 -7.3503 -0.0414 21 6 0.1623 -8.7980 0.0669 22 1 0.7347 -9.4243 -0.6171 23 8 0.3464 -9.2627 1.4056 24 6 -1.2997 -8.8677 -0.2923 25 6 -2.2582 -8.5197 0.6410 26 6 -3.5989 -8.5800 0.3101 27 6 -3.9816 -8.9963 -0.9513 28 6 -3.0233 -9.3488 -1.8831 29 6 -1.6823 -9.2845 -1.5536 30 1 -0.4850 0.8401 -0.0004 31 1 0.6245 -2.5563 -0.8920 32 1 0.6239 -2.5575 0.8880 33 1 3.1565 -3.4356 -0.0010 34 1 4.4861 -5.8815 1.0844 35 1 4.2785 -4.6297 -0.1671 36 1 5.8032 -6.5370 -0.8617 37 1 4.4066 -6.2970 -1.9402 38 1 2.5691 -7.8507 -1.8250 39 1 2.6553 -9.1986 -0.6645 40 1 0.1274 -6.7380 0.6967 41 1 0.4345 -6.9706 -1.0410 42 1 -0.1872 -8.7937 2.0617 43 1 -1.9594 -8.1982 1.6278 44 1 -4.3477 -8.3049 1.0382 45 1 -5.0293 -9.0467 -1.2087 46 1 -3.3222 -9.6745 -2.8685 47 1 -0.9336 -9.5603 -2.2815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:39 Heat of formation + Delta-G solvation = -102.543658 kcal Electronic energy + Delta-G solvation = -29475.296170 eV Core-core repulsion = 25429.821720 eV Total energy + Delta-G solvation = -4045.474450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.86699 -40.48247 -39.43534 -38.04037 -36.36610 -35.74973 -34.68906 -33.55194 -32.30189 -31.76560 -30.09849 -29.04305 -27.74936 -25.88899 -24.74847 -23.76766 -23.42602 -22.77068 -21.84303 -20.91832 -19.43165 -18.51097 -18.06832 -17.63037 -17.40900 -16.97370 -16.82456 -16.58914 -16.42276 -16.08219 -15.97290 -15.87723 -15.32843 -15.09533 -14.80357 -14.64882 -14.42835 -14.23897 -14.03553 -13.89358 -13.77843 -13.56425 -12.95327 -12.91400 -12.76449 -12.71323 -12.46306 -12.31756 -12.21842 -12.09058 -11.94250 -11.88563 -11.47174 -11.24450 -11.05656 -10.80114 -10.29120 -9.90237 -9.84041 -9.62119 -9.34557 -8.29436 -6.45854 0.38852 0.47626 1.42392 1.45096 1.55477 1.64308 2.19444 2.37172 2.75663 2.86816 3.05720 3.10094 3.47440 3.59452 3.69514 3.88623 3.94255 4.04377 4.07083 4.10446 4.17173 4.22437 4.26058 4.31297 4.37224 4.57615 4.61120 4.62193 4.73026 4.80211 4.86646 5.03321 5.05355 5.09303 5.16713 5.24760 5.26872 5.45174 5.52649 5.58888 5.60475 5.65439 5.69770 5.84271 6.06395 6.07112 6.09103 6.65313 6.65643 7.15153 7.24505 7.69573 8.82712 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.003355 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.474711 B = 8344.960676 C =10514.936426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.289 3.711 10 N -0.726 5.726 11 C 0.693 3.307 12 O -0.623 6.623 13 N -0.633 5.633 14 C 0.071 3.929 15 C 0.050 3.950 16 O -0.386 6.386 17 C 0.055 3.945 18 C 0.136 3.864 19 H 0.085 0.915 20 C -0.113 4.113 21 C 0.149 3.851 22 H 0.120 0.880 23 O -0.561 6.561 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.131 4.131 27 C -0.131 4.131 28 C -0.127 4.127 29 C -0.125 4.125 30 H 0.269 0.731 31 H -0.016 1.016 32 H -0.015 1.015 33 H 0.399 0.601 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.138 0.862 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.125 0.875 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.382 0.618 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -19.953 -1.608 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.593 4.593 8 H 0.099 0.901 9 C 0.166 3.834 10 N -0.382 5.382 11 C 0.395 3.605 12 O -0.505 6.505 13 N -0.372 5.372 14 C -0.052 4.052 15 C -0.027 4.027 16 O -0.304 6.304 17 C -0.022 4.022 18 C 0.033 3.967 19 H 0.102 0.898 20 C -0.151 4.151 21 C 0.089 3.911 22 H 0.137 0.863 23 O -0.368 6.368 24 C -0.125 4.125 25 C -0.146 4.146 26 C -0.149 4.149 27 C -0.149 4.149 28 C -0.145 4.145 29 C -0.143 4.143 30 H 0.077 0.923 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.155 0.845 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.232 0.768 43 H 0.143 0.857 44 H 0.155 0.845 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.636 -20.516 -1.891 20.922 hybrid contribution -0.466 1.955 0.238 2.024 sum 3.170 -18.561 -1.653 18.902 Atomic orbital electron populations 1.70139 1.08243 1.28536 1.49905 1.26032 0.95751 1.03769 0.93835 0.85170 0.78522 0.77016 0.78594 1.19618 1.20951 1.17906 1.21578 0.94198 0.90545 1.52978 0.90057 1.18357 0.87988 0.83244 0.93796 1.45582 1.10778 1.04039 1.77798 1.16281 0.84941 0.81292 0.78022 1.90884 1.16372 1.83565 1.59722 1.47426 1.06211 1.05360 1.78226 1.22581 0.79022 1.01594 1.02013 1.23123 1.01501 0.81334 0.96784 1.87940 1.22629 1.28454 1.91350 1.23172 0.80823 1.01088 0.97165 1.21780 0.94593 0.79770 1.00582 0.89750 1.22442 0.93865 0.95138 1.03646 1.21039 0.90916 0.94410 0.84698 0.86265 1.86525 1.69759 1.63895 1.16666 1.20670 0.96514 0.99925 0.95427 1.21117 0.93629 0.99970 0.99925 1.21422 0.96071 0.99601 0.97762 1.21512 1.00777 0.99017 0.93622 1.21480 0.92835 0.99726 1.00473 1.21288 0.97252 0.99799 0.95921 0.92260 0.99769 0.99751 0.76356 0.89292 0.88689 0.84466 0.92875 0.92868 0.85700 0.91199 0.92346 0.76814 0.85678 0.84548 0.83985 0.83764 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 2 C 0.01 0.32 5.46 84.66 0.46 0.79 16 3 Si 0.98 42.05 29.54 68.60 2.03 44.08 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.56 -30.17 9.28 25.60 0.24 -29.94 16 8 H 0.08 4.00 7.60 -2.91 -0.02 3.97 16 9 C 0.29 16.00 5.43 85.63 0.47 16.47 16 10 N -0.73 -31.57 5.46 -482.31 -2.63 -34.20 16 11 C 0.69 28.83 8.23 179.05 1.47 30.30 16 12 O -0.62 -30.38 11.90 -3.98 -0.05 -30.43 16 13 N -0.63 -19.56 3.02 -811.38 -2.45 -22.01 16 14 C 0.07 1.60 6.57 86.35 0.57 2.16 16 15 C 0.05 0.94 6.98 72.08 0.50 1.44 16 16 O -0.39 -8.50 10.74 -148.98 -1.60 -10.11 16 17 C 0.06 1.20 5.70 72.08 0.41 1.61 16 18 C 0.14 3.67 3.09 44.97 0.14 3.81 16 19 H 0.08 2.24 7.82 -2.39 -0.02 2.22 16 20 C -0.11 -3.35 2.86 30.59 0.09 -3.26 16 21 C 0.15 3.45 3.01 29.85 0.09 3.54 16 22 H 0.12 2.31 6.28 -2.39 -0.02 2.30 16 23 O -0.56 -12.64 12.75 -148.98 -1.90 -14.54 16 24 C -0.12 -3.09 4.97 -19.86 -0.10 -3.19 16 25 C -0.13 -3.18 9.30 22.27 0.21 -2.97 16 26 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 27 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 28 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 29 C -0.12 -2.79 9.67 22.27 0.22 -2.57 16 30 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 31 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 32 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H 0.40 14.58 5.88 -92.71 -0.55 14.04 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 2.06 5.78 -2.39 -0.01 2.04 16 36 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.13 2.20 6.82 -2.39 -0.02 2.19 16 40 H 0.07 2.58 6.31 -2.39 -0.02 2.56 16 41 H 0.06 2.05 7.24 -2.39 -0.02 2.04 16 42 H 0.38 7.25 7.35 -74.06 -0.54 6.71 16 43 H 0.13 2.76 6.71 -2.91 -0.02 2.74 16 44 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 45 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 47 H 0.14 2.46 8.04 -2.91 -0.02 2.43 16 Total: -1.00 -74.54 375.85 -0.98 -75.52 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.09 Total: 36.84 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.43 Total: 10.54 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.80 Total: -111.89 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -3.55 Total: -55.08 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -74.54 -0.98 -75.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.027 kcal (2) G-P(sol) polarization free energy of solvation -74.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds