Wall clock time and date at job start Tue Mar 31 2020 20:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.46752 * 2 1 4 4 C 1.42902 * 113.99393 * 180.02562 * 3 2 1 5 5 C 1.53788 * 113.61540 * 150.00019 * 4 3 2 6 6 C 1.53784 * 87.07926 * 89.19456 * 5 4 3 7 7 C 1.52998 * 113.61258 * 139.98276 * 6 5 4 8 8 O 1.45202 * 109.47333 * 176.52812 * 7 6 5 9 9 C 1.34228 * 117.00026 * 179.97438 * 8 7 6 10 10 O 1.20832 * 119.99973 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00065 * 179.97438 * 9 8 7 12 12 C 1.50697 * 109.47303 * 180.02562 * 11 9 8 13 13 C 1.38308 * 119.92937 * 269.72979 * 12 11 9 14 14 C 1.38098 * 120.06432 * 179.72235 * 13 12 11 15 15 C 1.38883 * 119.93329 * 0.57395 * 14 13 12 16 16 O 1.35751 * 120.06642 * 179.68019 * 15 14 13 17 17 C 1.34835 * 116.99516 * 174.48822 * 16 15 14 18 18 H 1.07999 * 120.00071 * 5.05502 * 17 16 15 19 19 C 1.38650 * 119.99915 * 185.05841 * 17 16 15 20 20 N 1.31567 * 119.99775 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00313 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46592 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47147 * 119.99725 * 21 19 17 24 24 H 1.48498 * 109.46923 * 240.00054 * 21 19 17 25 25 C 1.38878 * 119.85947 * 359.70241 * 15 14 13 26 26 C 1.38098 * 119.93364 * 359.97438 * 25 15 14 27 27 C 1.53779 * 87.17432 * 25.39114 * 6 5 4 28 28 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47064 * 299.99984 * 1 2 3 30 30 H 1.09001 * 109.47059 * 60.00464 * 1 2 3 31 31 H 1.09003 * 109.46997 * 240.00344 * 2 1 3 32 32 H 1.08992 * 109.46884 * 120.00103 * 2 1 3 33 33 H 1.08993 * 112.85647 * 18.80362 * 4 3 2 34 34 H 1.09005 * 113.60767 * 334.65415 * 5 4 3 35 35 H 1.08991 * 113.61904 * 203.74631 * 5 4 3 36 36 H 1.09001 * 113.61674 * 270.80312 * 6 5 4 37 37 H 1.08999 * 109.47420 * 296.52993 * 7 6 5 38 38 H 1.09009 * 109.47255 * 56.52983 * 7 6 5 39 39 H 1.08994 * 109.47195 * 300.00824 * 11 9 8 40 40 H 1.09009 * 109.46619 * 60.00673 * 11 9 8 41 41 H 1.08000 * 119.96623 * 359.97438 * 13 12 11 42 42 H 1.08012 * 120.03312 * 180.26975 * 14 13 12 43 43 H 0.97003 * 119.99901 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.03281 * 179.97438 * 25 15 14 45 45 H 1.07994 * 119.96931 * 180.02562 * 26 25 15 46 46 H 1.09003 * 113.61109 * 89.15149 * 27 6 5 47 47 H 1.09000 * 113.61680 * 220.05704 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9484 2.7253 -0.7052 6 6 3.8417 3.4320 0.6565 7 6 5.0047 4.3829 0.9462 8 8 4.7731 5.0599 2.2098 9 6 5.7079 5.9349 2.6125 10 8 6.6870 6.1292 1.9316 11 6 5.5357 6.6760 3.9134 12 6 6.7143 7.5896 4.1309 13 6 7.8268 7.1304 4.8124 14 6 8.9107 7.9635 5.0083 15 6 8.8780 9.2672 4.5307 16 8 9.9393 10.0904 4.7274 17 6 9.8900 11.3034 4.1408 18 1 8.9990 11.6132 3.6149 19 6 10.9833 12.1532 4.2126 20 7 12.0686 11.7760 4.8536 21 14 10.9154 13.8335 3.3994 22 1 9.5934 14.0147 2.7476 23 1 11.1106 14.8885 4.4259 24 1 11.9883 13.9325 2.3775 25 6 7.7571 9.7270 3.8518 26 6 6.6791 8.8870 3.6532 27 6 4.0035 2.0460 1.3029 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9278 0.5457 -0.3247 34 1 3.2627 3.1183 -1.4559 35 1 4.9711 2.6341 -1.0708 36 1 2.8678 3.8870 0.8372 37 1 5.9331 3.8148 1.0033 38 1 5.0786 5.1206 0.1471 39 1 4.6204 7.2666 3.8767 40 1 5.4739 5.9606 4.7336 41 1 7.8495 6.1182 5.1881 42 1 9.7810 7.6030 5.5368 43 1 12.8333 12.3706 4.9042 44 1 7.7285 10.7403 3.4795 45 1 5.8073 9.2438 3.1250 46 1 5.0414 1.7688 1.4871 47 1 3.3625 1.8914 2.1708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802943017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:58 Heat of formation + Delta-G solvation = -120.088894 kcal Electronic energy + Delta-G solvation = -27033.639331 eV Core-core repulsion = 22955.111312 eV Total energy + Delta-G solvation = -4078.528019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 11.34 seconds Orbital eigenvalues (eV) -40.54720 -39.81519 -38.93305 -37.15811 -36.57199 -35.83116 -32.50961 -31.62810 -31.36708 -30.16494 -28.83558 -26.71395 -26.12630 -25.16090 -23.29641 -23.10056 -21.98558 -21.50037 -20.21278 -19.81958 -17.99049 -17.49941 -17.17481 -16.95649 -16.52475 -16.27281 -16.03967 -15.56986 -14.77433 -14.71332 -14.50234 -14.26582 -13.89694 -13.78882 -13.59848 -13.41543 -13.08712 -12.98563 -12.80812 -12.70450 -12.52224 -12.42563 -11.94260 -11.88111 -11.76138 -11.52199 -11.28063 -11.23342 -11.01087 -10.89894 -10.83506 -10.75195 -10.60713 -10.41629 -10.38013 -10.16314 -9.86801 -9.32502 -8.82771 -8.16268 -7.19128 -6.44640 -4.03179 2.14003 2.24670 2.43159 2.87608 3.10905 3.13634 3.15234 3.20437 3.97472 4.14484 4.19161 4.35870 4.42231 4.59448 4.61595 4.74335 4.88745 4.90370 4.97055 5.04135 5.08935 5.14033 5.20962 5.24488 5.27464 5.31535 5.34497 5.42669 5.44124 5.47011 5.65585 5.65883 5.69194 5.72840 5.78483 5.84084 5.99735 6.21377 6.41003 6.52691 6.70640 6.82937 6.90842 7.05499 7.23008 7.35327 7.44515 7.82199 7.97904 8.00659 9.01108 9.70816 10.73370 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031923 B = 0.001598 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.886832 B =17517.173054 C =17788.700584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.367 6.367 4 C 0.064 3.936 5 C -0.132 4.132 6 C -0.102 4.102 7 C 0.074 3.926 8 O -0.362 6.362 9 C 0.453 3.547 10 O -0.493 6.493 11 C -0.050 4.050 12 C -0.183 4.183 13 C -0.057 4.057 14 C -0.192 4.192 15 C 0.159 3.841 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.233 4.233 26 C -0.053 4.053 27 C -0.153 4.153 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.269 0.731 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.090 0.910 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.351 -21.321 -8.349 30.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.286 6.286 4 C 0.005 3.995 5 C -0.169 4.169 6 C -0.120 4.120 7 C 0.000 4.000 8 O -0.280 6.280 9 C 0.296 3.704 10 O -0.378 6.378 11 C -0.088 4.088 12 C -0.184 4.184 13 C -0.075 4.075 14 C -0.211 4.211 15 C 0.105 3.895 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.252 4.252 26 C -0.072 4.072 27 C -0.190 4.190 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.145 0.855 45 H 0.124 0.876 46 H 0.109 0.891 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.726 -21.041 -8.408 30.042 hybrid contribution 0.265 0.621 -0.609 0.909 sum -19.460 -20.421 -9.017 29.615 Atomic orbital electron populations 1.21752 0.93632 1.02313 1.03258 1.22539 0.95653 0.83696 1.00099 1.87897 1.19664 1.26440 1.94579 1.23019 0.81697 0.97781 0.96958 1.23214 1.01975 0.95169 0.96572 1.22522 0.99170 0.93844 0.96464 1.23042 0.98311 0.94799 0.83804 1.86515 1.48892 1.53152 1.39452 1.24211 0.80431 0.77318 0.88491 1.90705 1.29866 1.62082 1.55183 1.20093 0.99519 0.97458 0.91704 1.18654 0.96272 0.94760 1.08682 1.20426 0.92191 0.97773 0.97138 1.20163 1.00069 0.92323 1.08542 1.19400 0.87794 0.90278 0.92046 1.83979 1.35721 1.25101 1.63189 1.21395 1.02003 0.89528 1.33825 0.88958 1.25298 0.94314 0.99815 0.97085 1.70056 1.03781 1.36738 1.39097 0.85639 0.78785 0.80223 0.78737 1.19079 1.20128 1.20132 1.21112 0.94851 1.01402 1.07857 1.20535 0.97172 0.92823 0.96628 1.23580 1.01708 0.95765 0.97992 0.91062 0.91727 0.91827 0.93339 0.93266 0.90673 0.89984 0.88572 0.87642 0.91283 0.91231 0.87855 0.87832 0.87201 0.86410 0.92064 0.85452 0.87630 0.89116 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.38 16 2 C 0.06 0.34 6.50 37.16 0.24 0.58 16 3 O -0.37 -3.08 10.27 -35.23 -0.36 -3.44 16 4 C 0.06 0.45 4.38 -25.82 -0.11 0.34 16 5 C -0.13 -0.93 7.48 -25.91 -0.19 -1.12 16 6 C -0.10 -0.87 3.95 -89.81 -0.35 -1.23 16 7 C 0.07 0.80 5.29 37.16 0.20 1.00 16 8 O -0.36 -4.61 10.22 -39.25 -0.40 -5.01 16 9 C 0.45 6.73 7.95 36.00 0.29 7.01 16 10 O -0.49 -9.20 15.78 -18.75 -0.30 -9.50 16 11 C -0.05 -0.66 5.94 -29.04 -0.17 -0.83 16 12 C -0.18 -3.20 4.38 -104.57 -0.46 -3.66 16 13 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 14 C -0.19 -4.17 9.99 -39.39 -0.39 -4.57 16 15 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 16 O -0.18 -5.14 9.76 0.03 0.00 -5.14 16 17 C -0.39 -11.10 9.49 30.88 0.29 -10.81 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 21 Si 0.94 20.77 29.55 -169.99 -5.02 15.74 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 C -0.23 -5.22 9.17 -39.40 -0.36 -5.58 16 26 C -0.05 -1.01 9.69 -39.61 -0.38 -1.40 16 27 C -0.15 -1.17 7.48 -25.83 -0.19 -1.36 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 38 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.10 1.11 8.08 -51.92 -0.42 0.69 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 45 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 46 H 0.09 0.63 7.92 -51.93 -0.41 0.22 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 398.88 15.07 6.01 6.01 Total: -1.00 -33.72 398.88 -8.54 -42.26 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.27 Total: 2.60 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -1.96 Total: -18.77 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.76 Total: -24.75 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -1.06 Total: -23.09 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.72 -8.54 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802943017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.831 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.34 seconds