Wall clock time and date at job start Tue Mar 31 2020 20:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.46752 * 2 1 4 4 C 1.42902 * 113.99393 * 180.02562 * 3 2 1 5 5 C 1.53788 * 113.61540 * 150.00019 * 4 3 2 6 6 C 1.53784 * 87.07926 * 89.19456 * 5 4 3 7 7 C 1.52998 * 113.61258 * 139.98276 * 6 5 4 8 8 O 1.45202 * 109.47333 * 176.52812 * 7 6 5 9 9 C 1.34228 * 117.00026 * 179.97438 * 8 7 6 10 10 O 1.20832 * 119.99973 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00065 * 179.97438 * 9 8 7 12 12 C 1.50697 * 109.47303 * 180.02562 * 11 9 8 13 13 C 1.38308 * 119.92937 * 269.72979 * 12 11 9 14 14 C 1.38098 * 120.06432 * 179.72235 * 13 12 11 15 15 C 1.38883 * 119.93329 * 0.57395 * 14 13 12 16 16 O 1.35751 * 120.06642 * 179.68019 * 15 14 13 17 17 C 1.34835 * 116.99516 * 174.48822 * 16 15 14 18 18 H 1.07999 * 120.00071 * 5.05502 * 17 16 15 19 19 C 1.38650 * 119.99915 * 185.05841 * 17 16 15 20 20 N 1.31567 * 119.99775 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00313 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46592 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47147 * 119.99725 * 21 19 17 24 24 H 1.48498 * 109.46923 * 240.00054 * 21 19 17 25 25 C 1.38878 * 119.85947 * 359.70241 * 15 14 13 26 26 C 1.38098 * 119.93364 * 359.97438 * 25 15 14 27 27 C 1.53779 * 87.17432 * 25.39114 * 6 5 4 28 28 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47064 * 299.99984 * 1 2 3 30 30 H 1.09001 * 109.47059 * 60.00464 * 1 2 3 31 31 H 1.09003 * 109.46997 * 240.00344 * 2 1 3 32 32 H 1.08992 * 109.46884 * 120.00103 * 2 1 3 33 33 H 1.08993 * 112.85647 * 18.80362 * 4 3 2 34 34 H 1.09005 * 113.60767 * 334.65415 * 5 4 3 35 35 H 1.08991 * 113.61904 * 203.74631 * 5 4 3 36 36 H 1.09001 * 113.61674 * 270.80312 * 6 5 4 37 37 H 1.08999 * 109.47420 * 296.52993 * 7 6 5 38 38 H 1.09009 * 109.47255 * 56.52983 * 7 6 5 39 39 H 1.08994 * 109.47195 * 300.00824 * 11 9 8 40 40 H 1.09009 * 109.46619 * 60.00673 * 11 9 8 41 41 H 1.08000 * 119.96623 * 359.97438 * 13 12 11 42 42 H 1.08012 * 120.03312 * 180.26975 * 14 13 12 43 43 H 0.97003 * 119.99901 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.03281 * 179.97438 * 25 15 14 45 45 H 1.07994 * 119.96931 * 180.02562 * 26 25 15 46 46 H 1.09003 * 113.61109 * 89.15149 * 27 6 5 47 47 H 1.09000 * 113.61680 * 220.05704 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9484 2.7253 -0.7052 6 6 3.8417 3.4320 0.6565 7 6 5.0047 4.3829 0.9462 8 8 4.7731 5.0599 2.2098 9 6 5.7079 5.9349 2.6125 10 8 6.6870 6.1292 1.9316 11 6 5.5357 6.6760 3.9134 12 6 6.7143 7.5896 4.1309 13 6 7.8268 7.1304 4.8124 14 6 8.9107 7.9635 5.0083 15 6 8.8780 9.2672 4.5307 16 8 9.9393 10.0904 4.7274 17 6 9.8900 11.3034 4.1408 18 1 8.9990 11.6132 3.6149 19 6 10.9833 12.1532 4.2126 20 7 12.0686 11.7760 4.8536 21 14 10.9154 13.8335 3.3994 22 1 9.5934 14.0147 2.7476 23 1 11.1106 14.8885 4.4259 24 1 11.9883 13.9325 2.3775 25 6 7.7571 9.7270 3.8518 26 6 6.6791 8.8870 3.6532 27 6 4.0035 2.0460 1.3029 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9278 0.5457 -0.3247 34 1 3.2627 3.1183 -1.4559 35 1 4.9711 2.6341 -1.0708 36 1 2.8678 3.8870 0.8372 37 1 5.9331 3.8148 1.0033 38 1 5.0786 5.1206 0.1471 39 1 4.6204 7.2666 3.8767 40 1 5.4739 5.9606 4.7336 41 1 7.8495 6.1182 5.1881 42 1 9.7810 7.6030 5.5368 43 1 12.8333 12.3706 4.9042 44 1 7.7285 10.7403 3.4795 45 1 5.8073 9.2438 3.1250 46 1 5.0414 1.7688 1.4871 47 1 3.3625 1.8914 2.1708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802943017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:57 Heat of formation + Delta-G solvation = -139.259245 kcal Electronic energy + Delta-G solvation = -27034.470620 eV Core-core repulsion = 22955.111312 eV Total energy + Delta-G solvation = -4079.359308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62374 -40.76871 -40.40473 -38.50827 -37.66902 -36.83046 -34.42427 -33.05392 -31.92796 -31.80847 -29.75276 -28.19501 -27.04669 -26.68930 -23.91048 -23.71671 -23.66476 -22.80821 -21.52225 -20.49971 -19.86697 -18.87304 -18.61635 -17.80904 -17.57509 -17.16491 -16.55584 -16.44396 -16.35996 -16.15402 -15.97272 -15.55462 -15.33224 -15.15553 -14.63296 -14.45122 -14.36798 -14.18188 -13.77755 -13.68035 -13.58760 -13.29947 -13.09369 -12.98502 -12.87092 -12.55039 -12.44833 -12.35081 -12.30516 -12.29031 -12.10601 -11.87818 -11.75936 -11.59641 -11.32096 -11.19636 -11.04481 -10.80528 -10.39738 -9.79256 -8.96017 -8.48563 -6.16904 0.57651 0.59264 1.28455 1.34088 1.41891 1.52678 1.79538 2.16809 2.63503 2.82489 3.14921 3.49513 3.53009 3.58794 3.73236 3.76528 3.85478 4.02019 4.14473 4.18083 4.19232 4.22875 4.30839 4.42597 4.43105 4.50038 4.52305 4.53579 4.57581 4.68356 4.75621 4.78104 4.85836 4.90526 5.03578 5.04704 5.09707 5.13318 5.17084 5.26545 5.29525 5.33266 5.50752 5.54163 5.69518 5.72579 6.01549 6.19630 6.34539 6.85001 6.96093 7.76204 8.74872 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031923 B = 0.001598 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.886832 B =17517.173054 C =17788.700584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.389 6.389 4 C 0.064 3.936 5 C -0.127 4.127 6 C -0.101 4.101 7 C 0.072 3.928 8 O -0.356 6.356 9 C 0.460 3.540 10 O -0.539 6.539 11 C -0.049 4.049 12 C -0.158 4.158 13 C -0.053 4.053 14 C -0.206 4.206 15 C 0.116 3.884 16 O -0.232 6.232 17 C -0.415 4.415 18 H 0.101 0.899 19 C -0.022 4.022 20 N -0.920 5.920 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.266 1.266 24 H -0.269 1.269 25 C -0.245 4.245 26 C -0.056 4.056 27 C -0.151 4.151 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.115 0.885 43 H 0.273 0.727 44 H 0.119 0.881 45 H 0.140 0.860 46 H 0.099 0.901 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.380 -23.148 -9.270 34.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.309 6.309 4 C 0.006 3.994 5 C -0.165 4.165 6 C -0.120 4.120 7 C -0.002 4.002 8 O -0.273 6.273 9 C 0.305 3.695 10 O -0.428 6.428 11 C -0.086 4.086 12 C -0.159 4.159 13 C -0.071 4.071 14 C -0.225 4.225 15 C 0.065 3.935 16 O -0.139 6.139 17 C -0.491 4.491 18 H 0.118 0.882 19 C -0.220 4.220 20 N -0.558 5.558 21 Si 0.839 3.161 22 H -0.175 1.175 23 H -0.191 1.191 24 H -0.194 1.194 25 C -0.264 4.264 26 C -0.074 4.074 27 C -0.188 4.188 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.158 0.842 46 H 0.117 0.883 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.832 -22.924 -9.327 33.672 hybrid contribution 0.913 0.842 -0.343 1.289 sum -21.919 -22.082 -9.670 32.581 Atomic orbital electron populations 1.21774 0.93210 1.03299 1.02589 1.22713 0.96094 0.82860 1.00926 1.87872 1.20360 1.27963 1.94660 1.23059 0.81420 0.98479 0.96445 1.23239 1.02737 0.94828 0.95672 1.22516 0.97745 0.93769 0.97956 1.23238 0.99375 0.94837 0.82718 1.86509 1.47956 1.52548 1.40243 1.24367 0.79775 0.76989 0.88375 1.90716 1.31735 1.63686 1.56692 1.20233 0.98446 0.97770 0.92144 1.19206 0.97034 0.94698 1.04984 1.20909 0.91054 0.98908 0.96224 1.20452 1.01512 0.91878 1.08669 1.19969 0.88059 0.91300 0.94130 1.83941 1.38113 1.26086 1.65726 1.21874 1.02810 0.90052 1.34348 0.88159 1.26601 0.93555 1.04234 0.97590 1.70196 1.04956 1.38837 1.41827 0.84520 0.79430 0.74387 0.77796 1.17540 1.19056 1.19407 1.21230 0.95435 1.01801 1.07910 1.20957 0.97082 0.93124 0.96240 1.23588 1.02159 0.95004 0.98061 0.89285 0.92503 0.92349 0.92258 0.92626 0.88889 0.90169 0.87293 0.88552 0.91146 0.91810 0.84441 0.84070 0.83199 0.86721 0.91807 0.86332 0.84185 0.88263 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 71.98 0.74 -0.54 16 2 C 0.05 0.50 6.50 71.98 0.47 0.97 16 3 O -0.39 -5.86 10.27 -148.98 -1.53 -7.39 16 4 C 0.06 0.76 4.38 31.18 0.14 0.90 16 5 C -0.13 -1.53 7.48 31.12 0.23 -1.30 16 6 C -0.10 -1.54 3.95 -10.27 -0.04 -1.58 16 7 C 0.07 1.39 5.29 71.98 0.38 1.77 16 8 O -0.36 -7.90 10.22 -51.39 -0.53 -8.42 16 9 C 0.46 12.02 7.95 71.24 0.57 12.58 16 10 O -0.54 -18.93 15.78 21.95 0.35 -18.59 16 11 C -0.05 -1.04 5.94 29.10 0.17 -0.87 16 12 C -0.16 -5.01 4.38 -19.83 -0.09 -5.10 16 13 C -0.05 -1.83 9.69 22.25 0.22 -1.62 16 14 C -0.21 -9.11 9.99 22.39 0.22 -8.89 16 15 C 0.12 6.00 6.65 22.58 0.15 6.15 16 16 O -0.23 -14.42 9.76 -22.80 -0.22 -14.64 16 17 C -0.41 -24.84 9.49 67.92 0.64 -24.19 16 18 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 19 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 20 N -0.92 -57.45 13.67 21.61 0.30 -57.16 16 21 Si 1.02 43.79 29.55 68.60 2.03 45.82 16 22 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 C -0.24 -11.12 9.17 22.39 0.21 -10.91 16 26 C -0.06 -2.01 9.69 22.25 0.22 -1.79 16 27 C -0.15 -1.96 7.48 31.18 0.23 -1.73 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 0.78 7.87 -2.39 -0.02 0.76 16 34 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.11 1.02 8.10 -2.39 -0.02 1.01 16 36 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.36 7.87 -2.39 -0.02 1.34 16 38 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.14 2.14 8.08 -2.39 -0.02 2.12 16 40 H 0.14 2.09 8.08 -2.38 -0.02 2.07 16 41 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.11 4.99 8.06 -2.90 -0.02 4.97 16 43 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.12 5.47 5.64 -2.91 -0.02 5.46 16 45 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 46 H 0.10 1.12 7.92 -2.39 -0.02 1.10 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -79.20 398.88 6.27 -72.93 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.96 Total: 24.42 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 4.92 Total: -36.97 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.30 Total: -57.16 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -1.93 Total: -49.04 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -79.20 6.27 -72.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802943017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.331 kcal (2) G-P(sol) polarization free energy of solvation -79.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds