Wall clock time and date at job start Tue Mar 31 2020 20:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.46905 * 2 1 4 4 C 1.42904 * 113.99904 * 179.97438 * 3 2 1 5 5 C 1.53780 * 113.61578 * 150.00244 * 4 3 2 6 6 C 1.53781 * 87.08342 * 89.19843 * 5 4 3 7 7 C 1.52999 * 113.61286 * 139.97767 * 6 5 4 8 8 O 1.45207 * 109.47065 * 175.00184 * 7 6 5 9 9 C 1.34228 * 117.00033 * 179.97438 * 8 7 6 10 10 O 1.20828 * 120.00157 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99833 * 180.02562 * 9 8 7 12 12 C 1.50703 * 109.47029 * 180.02562 * 11 9 8 13 13 C 1.38326 * 119.96036 * 269.72148 * 12 11 9 14 14 C 1.38280 * 120.13593 * 180.27023 * 13 12 11 15 15 C 1.38125 * 120.06813 * 0.02562 * 14 13 12 16 16 C 1.38857 * 119.92941 * 359.97438 * 15 14 13 17 17 O 1.35759 * 120.06714 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99718 * 354.48542 * 17 16 15 19 19 H 1.07998 * 120.00057 * 5.06548 * 18 17 16 20 20 C 1.38654 * 119.99581 * 185.05723 * 18 17 16 21 21 N 1.31561 * 120.00320 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46759 * 60.00279 * 22 20 18 24 24 H 1.48492 * 109.47092 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47168 * 300.00453 * 22 20 18 26 26 C 1.38074 * 119.96544 * 90.00097 * 12 11 9 27 27 C 1.53784 * 113.69255 * 247.53778 * 4 3 2 28 28 H 1.09003 * 109.46788 * 59.99528 * 1 2 3 29 29 H 1.08990 * 109.46876 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46960 * 300.00106 * 1 2 3 31 31 H 1.09001 * 109.46972 * 240.00446 * 2 1 3 32 32 H 1.08995 * 109.46913 * 120.00128 * 2 1 3 33 33 H 1.08991 * 112.84711 * 18.80541 * 4 3 2 34 34 H 1.09001 * 113.61049 * 334.65442 * 5 4 3 35 35 H 1.09000 * 113.61354 * 203.75216 * 5 4 3 36 36 H 1.08993 * 113.61836 * 270.80110 * 6 5 4 37 37 H 1.09001 * 109.47389 * 55.01067 * 7 6 5 38 38 H 1.08998 * 109.47736 * 295.00317 * 7 6 5 39 39 H 1.08996 * 109.47426 * 60.00486 * 11 9 8 40 40 H 1.08994 * 109.47220 * 300.00262 * 11 9 8 41 41 H 1.07995 * 119.93590 * 0.26096 * 13 12 11 42 42 H 1.07998 * 119.96668 * 180.02562 * 14 13 12 43 43 H 1.08000 * 120.03457 * 179.97438 * 15 14 13 44 44 H 0.96999 * 119.99759 * 180.02562 * 21 20 18 45 45 H 1.08000 * 120.03806 * 359.69747 * 26 12 11 46 46 H 1.09000 * 113.61558 * 156.32125 * 27 4 3 47 47 H 1.09000 * 113.61024 * 25.42025 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9490 2.7251 -0.7038 6 6 3.8412 3.4322 0.6575 7 6 5.0040 4.3832 0.9479 8 8 4.7542 5.0872 2.1931 9 6 5.6864 5.9657 2.5941 10 8 6.6782 6.1411 1.9266 11 6 5.4961 6.7333 3.8769 12 6 6.6754 7.6456 4.0961 13 6 7.7745 7.1956 4.8054 14 6 8.8562 8.0315 5.0134 15 6 8.8420 9.3191 4.5137 16 6 7.7402 9.7736 3.8013 17 8 7.7231 11.0388 3.3093 18 6 8.7551 11.8396 3.6436 19 1 9.5863 11.4423 4.2073 20 6 8.7493 13.1730 3.2636 21 7 7.7367 13.6570 2.5772 22 14 10.1794 14.2823 3.7261 23 1 11.4324 13.7465 3.1359 24 1 9.9325 15.6510 3.2059 25 1 10.3100 14.3311 5.2044 26 6 6.6553 8.9315 3.5937 27 6 4.0039 2.0455 1.3021 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9280 0.5457 -0.3228 34 1 3.2640 3.1180 -1.4552 35 1 4.9720 2.6338 -1.0687 36 1 2.8672 3.8873 0.8373 37 1 5.0957 5.1039 0.1353 38 1 5.9283 3.8118 1.0328 39 1 5.4169 6.0349 4.7100 40 1 4.5846 7.3274 3.8130 41 1 7.7877 6.1895 5.1976 42 1 9.7130 7.6772 5.5672 43 1 9.6870 9.9716 4.6769 44 1 7.7328 14.5897 2.3110 45 1 5.7971 9.2821 3.0397 46 1 5.0420 1.7683 1.4857 47 1 3.3632 1.8896 2.1701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803412030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:31 Heat of formation + Delta-G solvation = -119.054815 kcal Electronic energy + Delta-G solvation = -27156.931183 eV Core-core repulsion = 23078.448004 eV Total energy + Delta-G solvation = -4078.483178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = -11.36 seconds Orbital eigenvalues (eV) -40.54869 -39.81252 -38.92104 -37.12665 -36.53703 -35.83856 -32.44770 -32.06745 -31.44321 -29.34584 -28.81492 -27.07026 -26.10226 -25.23925 -23.27401 -23.14776 -21.81142 -21.45801 -20.33836 -19.83972 -17.67276 -17.48278 -17.14856 -16.91167 -16.53662 -16.19726 -16.01616 -15.56309 -15.06664 -14.74780 -14.41650 -14.37564 -13.87548 -13.85648 -13.52234 -13.43759 -13.03355 -12.98086 -12.78234 -12.59169 -12.44163 -12.40110 -11.94955 -11.84272 -11.72497 -11.53492 -11.25556 -11.19640 -10.99031 -10.84671 -10.81466 -10.76539 -10.62528 -10.44761 -10.36096 -10.17903 -9.84668 -9.32877 -8.81074 -8.09509 -7.21467 -6.41481 -4.00785 1.99682 2.38353 2.43045 2.87056 3.13298 3.15416 3.16849 3.19188 3.99134 4.16518 4.21896 4.38106 4.43790 4.60464 4.63859 4.76463 4.88607 4.91021 4.92646 5.03913 5.12738 5.12840 5.16259 5.20968 5.29485 5.36332 5.43723 5.45589 5.46847 5.52440 5.66411 5.68150 5.71166 5.76141 5.81046 5.93326 6.02369 6.17665 6.34074 6.52067 6.67501 6.85453 6.91815 7.08062 7.24932 7.37099 7.44959 7.81968 7.96499 8.03069 9.03901 9.74123 10.76532 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.001687 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.564945 B =16592.661623 C =17094.537617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.366 6.366 4 C 0.064 3.936 5 C -0.132 4.132 6 C -0.102 4.102 7 C 0.075 3.925 8 O -0.360 6.360 9 C 0.459 3.541 10 O -0.491 6.491 11 C -0.064 4.064 12 C -0.044 4.044 13 C -0.195 4.195 14 C -0.075 4.075 15 C -0.228 4.228 16 C 0.154 3.846 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.172 4.172 27 C -0.153 4.153 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.270 0.730 45 H 0.116 0.884 46 H 0.090 0.910 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 -25.916 -2.543 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.285 6.285 4 C 0.006 3.994 5 C -0.169 4.169 6 C -0.120 4.120 7 C 0.001 3.999 8 O -0.278 6.278 9 C 0.301 3.699 10 O -0.377 6.377 11 C -0.102 4.102 12 C -0.044 4.044 13 C -0.214 4.214 14 C -0.093 4.093 15 C -0.247 4.247 16 C 0.100 3.900 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.191 4.191 27 C -0.191 4.191 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.134 0.866 46 H 0.109 0.891 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.233 -25.363 -3.038 27.518 hybrid contribution 1.102 0.311 0.111 1.151 sum -9.131 -25.052 -2.928 26.824 Atomic orbital electron populations 1.21754 0.93626 1.02296 1.03294 1.22538 0.95665 0.83707 1.00064 1.87903 1.19644 1.26417 1.94574 1.22974 0.81716 0.97774 0.96970 1.23219 1.01981 0.95128 0.96613 1.22529 0.99256 0.93752 0.96475 1.23065 0.98214 0.94373 0.84273 1.86503 1.48372 1.52137 1.40814 1.23837 0.80729 0.77616 0.87719 1.90716 1.29173 1.62797 1.54989 1.20261 0.99752 0.97460 0.92714 1.18680 0.94171 0.92873 0.98676 1.20368 0.95157 0.99342 1.06540 1.20686 0.97095 0.93433 0.98074 1.21200 1.00332 0.97266 1.05914 1.19267 0.92812 0.86572 0.91323 1.83980 1.44886 1.17087 1.62243 1.21274 0.98219 0.90552 1.36803 0.89146 1.25279 0.98481 0.96284 0.96438 1.70034 1.29724 1.15181 1.34890 0.85785 0.79890 0.78758 0.79010 1.19529 1.20297 1.19513 1.19968 0.98772 0.93478 1.06892 1.23560 1.01665 0.95813 0.98039 0.91803 0.91076 0.91716 0.93351 0.93295 0.90702 0.89936 0.88575 0.87527 0.91055 0.91259 0.87231 0.87065 0.87766 0.87341 0.85515 0.92014 0.86632 0.89133 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.42 16 2 C 0.06 0.35 6.50 37.16 0.24 0.59 16 3 O -0.37 -3.19 10.28 -35.23 -0.36 -3.56 16 4 C 0.06 0.47 4.37 -25.92 -0.11 0.36 16 5 C -0.13 -0.98 7.47 -25.92 -0.19 -1.17 16 6 C -0.10 -0.92 3.96 -89.81 -0.36 -1.27 16 7 C 0.07 0.84 5.30 37.16 0.20 1.03 16 8 O -0.36 -4.77 10.22 -39.25 -0.40 -5.18 16 9 C 0.46 7.11 7.95 36.00 0.29 7.40 16 10 O -0.49 -9.47 15.78 -18.75 -0.30 -9.76 16 11 C -0.06 -0.90 5.94 -29.03 -0.17 -1.07 16 12 C -0.04 -0.80 4.37 -104.65 -0.46 -1.26 16 13 C -0.20 -3.51 9.70 -39.53 -0.38 -3.89 16 14 C -0.07 -1.43 10.04 -39.61 -0.40 -1.82 16 15 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 16 C 0.15 3.85 6.65 -39.11 -0.26 3.59 16 17 O -0.18 -5.22 9.76 0.02 0.00 -5.22 16 18 C -0.39 -11.18 9.49 30.89 0.29 -10.88 16 19 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -25.67 13.67 55.48 0.76 -24.91 16 22 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 C -0.17 -3.77 9.64 -39.40 -0.38 -4.15 16 27 C -0.15 -1.20 7.47 -25.91 -0.19 -1.39 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.60 8.10 -51.93 -0.42 0.17 16 36 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 38 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 39 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 40 H 0.11 1.35 8.08 -51.93 -0.42 0.93 16 41 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 46 H 0.09 0.63 7.90 -51.93 -0.41 0.22 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -34.03 398.83 -8.54 -42.57 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.26 Total: 3.14 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -1.96 Total: -18.87 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.76 Total: -24.91 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -1.06 Total: -23.72 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.03 -8.54 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803412030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.485 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -11.36 seconds