Wall clock time and date at job start Tue Mar 31 2020 20:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.46905 * 2 1 4 4 C 1.42904 * 113.99904 * 179.97438 * 3 2 1 5 5 C 1.53780 * 113.61578 * 150.00244 * 4 3 2 6 6 C 1.53781 * 87.08342 * 89.19843 * 5 4 3 7 7 C 1.52999 * 113.61286 * 139.97767 * 6 5 4 8 8 O 1.45207 * 109.47065 * 175.00184 * 7 6 5 9 9 C 1.34228 * 117.00033 * 179.97438 * 8 7 6 10 10 O 1.20828 * 120.00157 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99833 * 180.02562 * 9 8 7 12 12 C 1.50703 * 109.47029 * 180.02562 * 11 9 8 13 13 C 1.38326 * 119.96036 * 269.72148 * 12 11 9 14 14 C 1.38280 * 120.13593 * 180.27023 * 13 12 11 15 15 C 1.38125 * 120.06813 * 0.02562 * 14 13 12 16 16 C 1.38857 * 119.92941 * 359.97438 * 15 14 13 17 17 O 1.35759 * 120.06714 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99718 * 354.48542 * 17 16 15 19 19 H 1.07998 * 120.00057 * 5.06548 * 18 17 16 20 20 C 1.38654 * 119.99581 * 185.05723 * 18 17 16 21 21 N 1.31561 * 120.00320 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46759 * 60.00279 * 22 20 18 24 24 H 1.48492 * 109.47092 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47168 * 300.00453 * 22 20 18 26 26 C 1.38074 * 119.96544 * 90.00097 * 12 11 9 27 27 C 1.53784 * 113.69255 * 247.53778 * 4 3 2 28 28 H 1.09003 * 109.46788 * 59.99528 * 1 2 3 29 29 H 1.08990 * 109.46876 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46960 * 300.00106 * 1 2 3 31 31 H 1.09001 * 109.46972 * 240.00446 * 2 1 3 32 32 H 1.08995 * 109.46913 * 120.00128 * 2 1 3 33 33 H 1.08991 * 112.84711 * 18.80541 * 4 3 2 34 34 H 1.09001 * 113.61049 * 334.65442 * 5 4 3 35 35 H 1.09000 * 113.61354 * 203.75216 * 5 4 3 36 36 H 1.08993 * 113.61836 * 270.80110 * 6 5 4 37 37 H 1.09001 * 109.47389 * 55.01067 * 7 6 5 38 38 H 1.08998 * 109.47736 * 295.00317 * 7 6 5 39 39 H 1.08996 * 109.47426 * 60.00486 * 11 9 8 40 40 H 1.08994 * 109.47220 * 300.00262 * 11 9 8 41 41 H 1.07995 * 119.93590 * 0.26096 * 13 12 11 42 42 H 1.07998 * 119.96668 * 180.02562 * 14 13 12 43 43 H 1.08000 * 120.03457 * 179.97438 * 15 14 13 44 44 H 0.96999 * 119.99759 * 180.02562 * 21 20 18 45 45 H 1.08000 * 120.03806 * 359.69747 * 26 12 11 46 46 H 1.09000 * 113.61558 * 156.32125 * 27 4 3 47 47 H 1.09000 * 113.61024 * 25.42025 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9490 2.7251 -0.7038 6 6 3.8412 3.4322 0.6575 7 6 5.0040 4.3832 0.9479 8 8 4.7542 5.0872 2.1931 9 6 5.6864 5.9657 2.5941 10 8 6.6782 6.1411 1.9266 11 6 5.4961 6.7333 3.8769 12 6 6.6754 7.6456 4.0961 13 6 7.7745 7.1956 4.8054 14 6 8.8562 8.0315 5.0134 15 6 8.8420 9.3191 4.5137 16 6 7.7402 9.7736 3.8013 17 8 7.7231 11.0388 3.3093 18 6 8.7551 11.8396 3.6436 19 1 9.5863 11.4423 4.2073 20 6 8.7493 13.1730 3.2636 21 7 7.7367 13.6570 2.5772 22 14 10.1794 14.2823 3.7261 23 1 11.4324 13.7465 3.1359 24 1 9.9325 15.6510 3.2059 25 1 10.3100 14.3311 5.2044 26 6 6.6553 8.9315 3.5937 27 6 4.0039 2.0455 1.3021 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9280 0.5457 -0.3228 34 1 3.2640 3.1180 -1.4552 35 1 4.9720 2.6338 -1.0687 36 1 2.8672 3.8873 0.8373 37 1 5.0957 5.1039 0.1353 38 1 5.9283 3.8118 1.0328 39 1 5.4169 6.0349 4.7100 40 1 4.5846 7.3274 3.8130 41 1 7.7877 6.1895 5.1976 42 1 9.7130 7.6772 5.5672 43 1 9.6870 9.9716 4.6769 44 1 7.7328 14.5897 2.3110 45 1 5.7971 9.2821 3.0397 46 1 5.0420 1.7683 1.4857 47 1 3.3632 1.8896 2.1701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803412030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:17 Heat of formation + Delta-G solvation = -138.585334 kcal Electronic energy + Delta-G solvation = -27157.778090 eV Core-core repulsion = 23078.448004 eV Total energy + Delta-G solvation = -4079.330085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 6.59 seconds Orbital eigenvalues (eV) -41.68471 -40.77390 -40.41798 -38.48702 -37.70058 -36.86883 -34.35854 -33.62467 -31.94882 -30.97293 -29.87639 -28.38834 -27.25498 -26.69849 -24.04371 -23.71858 -23.30692 -22.93408 -21.74569 -20.52727 -19.50394 -18.81005 -18.67304 -17.78629 -17.63845 -17.14000 -16.74553 -16.55913 -16.41771 -16.17017 -16.11233 -15.54511 -15.35916 -15.16877 -14.61093 -14.43479 -14.35215 -14.05253 -13.81444 -13.67670 -13.58939 -13.30879 -13.09943 -12.95809 -12.90706 -12.51395 -12.45656 -12.42870 -12.32197 -12.24851 -12.14120 -11.91058 -11.78368 -11.63062 -11.35412 -11.22260 -11.05920 -10.79949 -10.40031 -9.70625 -9.00974 -8.46932 -6.15951 0.42398 0.72869 1.21408 1.34402 1.45287 1.51140 1.74077 2.17896 2.63549 2.83260 3.15430 3.39585 3.51019 3.58016 3.69001 3.75151 3.83034 4.07404 4.11406 4.18081 4.22279 4.28907 4.29840 4.37855 4.41752 4.48611 4.50590 4.52182 4.55645 4.60793 4.71985 4.75134 4.85289 4.89941 5.02176 5.03632 5.09359 5.11561 5.16371 5.25279 5.29142 5.31749 5.46964 5.61646 5.69428 5.71983 6.01770 6.20375 6.34939 6.77535 6.97239 7.77994 8.76188 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026570 B = 0.001687 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.564945 B =16592.661623 C =17094.537617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.390 6.390 4 C 0.065 3.935 5 C -0.128 4.128 6 C -0.104 4.104 7 C 0.072 3.928 8 O -0.354 6.354 9 C 0.465 3.535 10 O -0.537 6.537 11 C -0.063 4.063 12 C -0.037 4.037 13 C -0.176 4.176 14 C -0.072 4.072 15 C -0.242 4.242 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.416 4.416 19 H 0.102 0.898 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.190 4.190 27 C -0.148 4.148 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.155 0.845 40 H 0.130 0.870 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.272 0.728 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 -29.281 -1.034 30.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.310 6.310 4 C 0.007 3.993 5 C -0.166 4.166 6 C -0.122 4.122 7 C -0.002 4.002 8 O -0.271 6.271 9 C 0.309 3.691 10 O -0.426 6.426 11 C -0.100 4.100 12 C -0.038 4.038 13 C -0.194 4.194 14 C -0.090 4.090 15 C -0.261 4.261 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.492 4.492 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.209 4.209 27 C -0.186 4.186 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.173 0.827 40 H 0.148 0.852 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.126 0.874 46 H 0.121 0.879 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.618 -28.804 -1.504 30.404 hybrid contribution 0.771 0.984 -0.314 1.289 sum -8.847 -27.819 -1.819 29.249 Atomic orbital electron populations 1.21778 0.93296 1.03307 1.02538 1.22717 0.96039 0.82827 1.00988 1.87880 1.20425 1.28035 1.94662 1.23013 0.81407 0.98444 0.96441 1.23255 1.02795 0.94919 0.95605 1.22531 0.97635 0.93861 0.98186 1.23282 0.99573 0.94308 0.83027 1.86502 1.47461 1.51564 1.41589 1.24036 0.80131 0.77299 0.87599 1.90714 1.31103 1.64326 1.56434 1.20389 0.98335 0.97644 0.93586 1.19139 0.95995 0.91845 0.96785 1.21010 0.93655 1.00875 1.03907 1.21157 0.98870 0.91822 0.97180 1.21342 0.99435 0.99018 1.06309 1.19866 0.94975 0.85968 0.93124 1.83941 1.46064 1.19108 1.65005 1.21801 0.98742 0.91335 1.37325 0.88112 1.26619 1.01746 0.97609 0.96090 1.70189 1.32611 1.15742 1.37411 0.84634 0.75884 0.76233 0.79357 1.18280 1.19564 1.17963 1.20230 0.98056 0.95005 1.07631 1.23564 1.02327 0.94642 0.98059 0.92445 0.89207 0.92557 0.92206 0.92499 0.88659 0.90398 0.87131 0.88799 0.92147 0.90584 0.82718 0.85191 0.83113 0.83361 0.86228 0.91857 0.87431 0.87917 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 71.98 0.74 -0.68 16 2 C 0.05 0.53 6.50 71.98 0.47 1.00 16 3 O -0.39 -6.28 10.28 -148.98 -1.53 -7.81 16 4 C 0.06 0.82 4.37 31.12 0.14 0.96 16 5 C -0.13 -1.71 7.47 31.12 0.23 -1.48 16 6 C -0.10 -1.74 3.96 -10.27 -0.04 -1.78 16 7 C 0.07 1.52 5.30 71.98 0.38 1.90 16 8 O -0.35 -8.71 10.22 -51.40 -0.53 -9.23 16 9 C 0.47 13.45 7.95 71.23 0.57 14.02 16 10 O -0.54 -20.16 15.78 21.96 0.35 -19.81 16 11 C -0.06 -1.55 5.94 29.10 0.17 -1.37 16 12 C -0.04 -1.30 4.37 -19.88 -0.09 -1.38 16 13 C -0.18 -5.63 9.70 22.30 0.22 -5.41 16 14 C -0.07 -2.56 10.04 22.25 0.22 -2.34 16 15 C -0.24 -10.98 9.17 22.39 0.21 -10.77 16 16 C 0.11 5.79 6.65 22.58 0.15 5.94 16 17 O -0.23 -14.69 9.76 -22.85 -0.22 -14.91 16 18 C -0.42 -25.00 9.49 67.92 0.64 -24.35 16 19 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 20 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 21 N -0.92 -57.88 13.67 21.61 0.30 -57.58 16 22 Si 1.02 43.77 29.55 68.60 2.03 45.80 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 26 C -0.19 -8.54 9.64 22.39 0.22 -8.32 16 27 C -0.15 -2.01 7.47 31.12 0.23 -1.78 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.10 0.82 7.87 -2.39 -0.02 0.80 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 38 H 0.08 1.52 7.84 -2.39 -0.02 1.50 16 39 H 0.16 2.48 8.08 -2.39 -0.02 2.46 16 40 H 0.13 2.79 8.08 -2.39 -0.02 2.77 16 41 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 42 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 45 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 46 H 0.10 1.15 7.90 -2.39 -0.02 1.13 16 47 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -80.33 398.83 6.27 -74.06 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.96 Total: 26.23 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 4.92 Total: -36.75 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.30 Total: -57.58 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -1.93 Total: -51.76 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -80.33 6.27 -74.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803412030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.527 kcal (2) G-P(sol) polarization free energy of solvation -80.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.60 seconds