Wall clock time and date at job start Tue Mar 31 2020 20:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 111.00099 * 2 1 4 4 C 1.38503 * 110.99650 * 123.94915 * 2 1 3 5 5 N 1.31196 * 125.79427 * 304.93842 * 4 2 1 6 6 C 1.34389 * 109.30395 * 179.76673 * 5 4 2 7 7 C 1.34383 * 108.31914 * 0.37911 * 6 5 4 8 8 C 1.50694 * 126.52931 * 179.89521 * 7 6 5 9 9 N 1.46505 * 109.47202 * 94.68383 * 8 7 6 10 10 C 1.39920 * 119.99731 * 180.02562 * 9 8 7 11 11 C 1.38719 * 120.08544 * 0.02562 * 10 9 8 12 12 C 1.38216 * 120.01968 * 179.74091 * 11 10 9 13 13 C 1.38526 * 120.17411 * 0.23536 * 12 11 10 14 14 F 1.35104 * 119.91779 * 179.97438 * 13 12 11 15 15 C 1.38352 * 120.16355 * 0.02562 * 13 12 11 16 16 C 1.38724 * 119.97903 * 0.02562 * 15 13 12 17 17 O 1.35800 * 120.08825 * 179.97438 * 16 15 13 18 18 C 1.34803 * 116.99739 * 354.39280 * 17 16 15 19 19 H 1.08001 * 119.99948 * 5.06884 * 18 17 16 20 20 C 1.38622 * 119.99612 * 185.06645 * 18 17 16 21 21 N 1.31576 * 120.00413 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00007 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46935 * 59.99736 * 22 20 18 24 24 H 1.48499 * 109.47493 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46762 * 300.00237 * 22 20 18 26 26 N 1.36027 * 125.78499 * 124.93803 * 4 2 1 27 27 C 1.46505 * 126.49744 * 359.97438 * 26 4 2 28 28 H 1.08993 * 109.47435 * 296.04931 * 1 2 3 29 29 H 1.09004 * 109.47000 * 56.04757 * 1 2 3 30 30 H 1.08997 * 109.46944 * 176.04227 * 1 2 3 31 31 H 1.08998 * 109.47278 * 178.95820 * 3 2 1 32 32 H 1.08999 * 109.46967 * 298.96309 * 3 2 1 33 33 H 1.09007 * 109.47074 * 58.95769 * 3 2 1 34 34 H 1.07994 * 125.84108 * 180.23792 * 6 5 4 35 35 H 1.09002 * 109.47285 * 334.68624 * 8 7 6 36 36 H 1.08994 * 109.47234 * 214.68874 * 8 7 6 37 37 H 0.96994 * 119.99799 * 0.02562 * 9 8 7 38 38 H 1.08007 * 119.98936 * 0.02562 * 11 10 9 39 39 H 1.08000 * 119.90826 * 180.25089 * 12 11 10 40 40 H 1.08002 * 120.01245 * 179.97438 * 15 13 12 41 41 H 0.97007 * 120.00356 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.46858 * 275.00636 * 27 26 4 43 43 H 1.08991 * 109.46822 * 35.00329 * 27 26 4 44 44 H 1.08997 * 109.46836 * 155.00445 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9653 -0.7221 1.0726 5 7 1.6713 -0.5205 2.3352 6 6 2.3330 -1.4113 3.0932 7 6 3.0704 -2.1899 2.2833 8 6 3.9724 -3.3214 2.7040 9 7 3.2393 -4.5871 2.6206 10 6 3.8728 -5.7864 2.9645 11 6 5.1947 -5.7788 3.3851 12 6 5.8175 -6.9636 3.7296 13 6 5.1266 -8.1618 3.6516 14 9 5.7406 -9.3169 3.9890 15 6 3.8097 -8.1785 3.2279 16 6 3.1785 -6.9933 2.8795 17 8 1.8860 -7.0072 2.4629 18 6 1.3090 -8.2144 2.2986 19 1 1.8444 -9.1109 2.5744 20 6 0.0284 -8.3050 1.7757 21 7 -0.6237 -7.2129 1.4393 22 14 -0.7717 -9.9777 1.5488 23 1 -0.8717 -10.6610 2.8635 24 1 -2.1312 -9.8029 0.9776 25 1 0.0519 -10.7990 0.6255 26 7 2.8403 -1.7608 0.9956 27 6 3.4263 -2.3177 -0.2261 28 1 -0.3634 0.4513 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0849 1.3424 0.0187 32 1 1.6611 1.8890 -0.8991 33 1 1.6309 1.9006 0.8805 34 1 2.2827 -1.4870 4.1693 35 1 4.3033 -3.1601 3.7300 36 1 4.8393 -3.3594 2.0445 37 1 2.3149 -4.5937 2.3270 38 1 5.7360 -4.8463 3.4478 39 1 6.8455 -6.9552 4.0607 40 1 3.2734 -9.1141 3.1676 41 1 -1.5201 -7.2762 1.0737 42 1 2.7428 -3.0503 -0.6557 43 1 3.5983 -1.5164 -0.9445 44 1 4.3736 -2.8010 0.0129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822470401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:43 Heat of formation + Delta-G solvation = 39.776670 kcal Electronic energy + Delta-G solvation = -28405.276510 eV Core-core repulsion = 24274.805979 eV Total energy + Delta-G solvation = -4130.470531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.08101 -42.07530 -39.22079 -37.30303 -36.60110 -34.81200 -33.85962 -32.33393 -30.42798 -29.29782 -27.83330 -27.58690 -27.00484 -25.42170 -25.36898 -23.93686 -21.92364 -21.12811 -20.53316 -19.67466 -18.21251 -17.70788 -17.19448 -16.38236 -16.11032 -15.74279 -15.55522 -15.17386 -14.87806 -14.63411 -14.55546 -14.25534 -14.06985 -13.94630 -13.70607 -13.58673 -13.25863 -13.04789 -12.84462 -12.76920 -12.53183 -12.38957 -12.21706 -11.99769 -11.93856 -11.91219 -11.46689 -11.31411 -10.87246 -10.61413 -10.44823 -10.13195 -9.63452 -9.52716 -9.32219 -9.02891 -8.88060 -8.27993 -7.78462 -6.52401 -6.49303 -4.06459 1.84386 2.07647 2.19794 2.50215 3.01130 3.11751 3.12071 3.14853 3.76235 3.91190 4.13410 4.42569 4.61509 4.79028 4.81769 4.93799 5.04643 5.10883 5.14620 5.20397 5.24812 5.28770 5.29423 5.45128 5.50840 5.54278 5.58958 5.61759 5.77635 5.79524 5.82902 6.06116 6.12972 6.37228 6.51331 6.52309 6.53678 6.76601 6.77574 6.98306 7.06629 7.21507 7.43136 7.56821 7.87605 7.97650 8.02047 8.32522 8.95369 9.60631 10.66648 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.003603 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.584848 B = 7769.655332 C =10104.603374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.474 5.474 3 C 0.036 3.964 4 C 0.371 3.629 5 N -0.508 5.508 6 C 0.005 3.995 7 C -0.029 4.029 8 C 0.213 3.787 9 N -0.743 5.743 10 C 0.152 3.848 11 C -0.145 4.145 12 C -0.196 4.196 13 C 0.088 3.912 14 F -0.157 7.157 15 C -0.242 4.242 16 C 0.123 3.877 17 O -0.175 6.175 18 C -0.388 4.388 19 H 0.091 0.909 20 C 0.041 3.959 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.270 1.270 26 N -0.435 5.435 27 C 0.078 3.922 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.172 0.828 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.410 0.590 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.270 0.730 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 13.026 -2.971 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.198 5.198 3 C -0.111 4.111 4 C 0.019 3.981 5 N -0.230 5.230 6 C -0.146 4.146 7 C -0.144 4.144 8 C 0.087 3.913 9 N -0.379 5.379 10 C 0.051 3.949 11 C -0.169 4.169 12 C -0.216 4.216 13 C 0.067 3.933 14 F -0.136 7.136 15 C -0.263 4.263 16 C 0.068 3.932 17 O -0.079 6.079 18 C -0.464 4.464 19 H 0.109 0.891 20 C -0.163 4.163 21 N -0.497 5.497 22 Si 0.764 3.236 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.195 1.195 26 N -0.119 5.119 27 C -0.064 4.064 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.189 0.811 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.247 0.753 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.155 0.845 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.637 13.684 -3.402 15.585 hybrid contribution -0.343 -1.463 0.150 1.510 sum 6.294 12.221 -3.252 14.126 Atomic orbital electron populations 1.22384 0.83646 1.03315 1.01706 1.58699 1.10089 1.14371 1.36688 1.22396 1.00404 0.86545 1.01802 1.20719 0.95829 0.92254 0.89302 1.70673 1.25556 1.26189 1.00604 1.21981 0.97800 0.95169 0.99632 1.21160 1.07227 1.02691 0.83356 1.19384 0.91618 0.79824 1.00501 1.44396 1.15480 1.01657 1.76319 1.17064 0.91749 0.84185 1.01898 1.19916 0.92670 0.97539 1.06810 1.20284 1.00126 0.91038 1.10200 1.17241 0.91447 0.81043 1.03542 1.91382 1.83191 1.48398 1.90668 1.20791 0.94534 0.99650 1.11337 1.18592 0.86268 0.91126 0.97232 1.83899 1.17925 1.32223 1.73842 1.21242 0.98834 0.82792 1.43528 0.89127 1.25239 0.95662 0.99351 0.96054 1.70018 1.12569 1.27595 1.39513 0.85797 0.78415 0.80250 0.79127 1.19442 1.20295 1.19476 1.45309 1.34267 1.25269 1.07082 1.21997 0.99534 1.00119 0.84777 0.93415 0.90481 0.90918 0.91556 0.90371 0.93827 0.81105 0.90364 0.92375 0.75346 0.86162 0.86509 0.84452 0.91990 0.90081 0.89473 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 9.46 60.07 0.57 0.98 16 2 N -0.47 -5.66 4.98 -190.47 -0.95 -6.61 16 3 C 0.04 0.34 9.53 60.07 0.57 0.91 16 4 C 0.37 5.33 6.37 -319.60 -2.03 3.30 16 5 N -0.51 -8.02 11.04 -13.92 -0.15 -8.18 16 6 C 0.00 0.07 11.76 -17.79 -0.21 -0.14 16 7 C -0.03 -0.42 6.33 -81.33 -0.52 -0.93 16 8 C 0.21 2.83 5.14 -5.19 -0.03 2.81 16 9 N -0.74 -13.02 5.72 -59.63 -0.34 -13.36 16 10 C 0.15 2.95 6.67 -83.52 -0.56 2.39 16 11 C -0.15 -2.43 9.31 -39.41 -0.37 -2.80 16 12 C -0.20 -3.41 10.02 -39.48 -0.40 -3.81 16 13 C 0.09 1.75 7.29 -39.43 -0.29 1.46 16 14 F -0.16 -3.06 17.26 2.25 0.04 -3.02 16 15 C -0.24 -5.32 9.14 -39.36 -0.36 -5.68 16 16 C 0.12 2.84 6.67 -38.93 -0.26 2.58 16 17 O -0.17 -4.68 9.00 -0.03 0.00 -4.68 16 18 C -0.39 -10.51 9.49 30.87 0.29 -10.22 16 19 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 21 N -0.86 -24.41 13.67 55.48 0.76 -23.65 16 22 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 N -0.44 -5.97 3.20 -120.30 -0.39 -6.35 16 27 C 0.08 0.86 11.00 59.85 0.66 1.52 16 28 H 0.05 0.56 8.00 -51.93 -0.42 0.15 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.44 8.14 -51.92 -0.42 0.01 16 34 H 0.17 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 36 H 0.06 0.70 7.15 -51.93 -0.37 0.33 16 37 H 0.41 8.33 7.83 -40.82 -0.32 8.01 16 38 H 0.12 1.62 6.73 -52.48 -0.35 1.27 16 39 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.14 3.08 5.64 -52.49 -0.30 2.79 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 0.83 7.19 -51.93 -0.37 0.46 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -31.02 376.51 -9.15 -40.17 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.75 Total: 11.35 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.02 Total: -6.62 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -1.07 Total: -58.14 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: 0.00 Total: -4.68 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.02 -9.15 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822470401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.945 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds