Wall clock time and date at job start Tue Mar 31 2020 20:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 111.00099 * 2 1 4 4 C 1.38503 * 110.99650 * 123.94915 * 2 1 3 5 5 N 1.31196 * 125.79427 * 304.93842 * 4 2 1 6 6 C 1.34389 * 109.30395 * 179.76673 * 5 4 2 7 7 C 1.34383 * 108.31914 * 0.37911 * 6 5 4 8 8 C 1.50694 * 126.52931 * 179.89521 * 7 6 5 9 9 N 1.46505 * 109.47202 * 94.68383 * 8 7 6 10 10 C 1.39920 * 119.99731 * 180.02562 * 9 8 7 11 11 C 1.38719 * 120.08544 * 0.02562 * 10 9 8 12 12 C 1.38216 * 120.01968 * 179.74091 * 11 10 9 13 13 C 1.38526 * 120.17411 * 0.23536 * 12 11 10 14 14 F 1.35104 * 119.91779 * 179.97438 * 13 12 11 15 15 C 1.38352 * 120.16355 * 0.02562 * 13 12 11 16 16 C 1.38724 * 119.97903 * 0.02562 * 15 13 12 17 17 O 1.35800 * 120.08825 * 179.97438 * 16 15 13 18 18 C 1.34803 * 116.99739 * 354.39280 * 17 16 15 19 19 H 1.08001 * 119.99948 * 5.06884 * 18 17 16 20 20 C 1.38622 * 119.99612 * 185.06645 * 18 17 16 21 21 N 1.31576 * 120.00413 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00007 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46935 * 59.99736 * 22 20 18 24 24 H 1.48499 * 109.47493 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46762 * 300.00237 * 22 20 18 26 26 N 1.36027 * 125.78499 * 124.93803 * 4 2 1 27 27 C 1.46505 * 126.49744 * 359.97438 * 26 4 2 28 28 H 1.08993 * 109.47435 * 296.04931 * 1 2 3 29 29 H 1.09004 * 109.47000 * 56.04757 * 1 2 3 30 30 H 1.08997 * 109.46944 * 176.04227 * 1 2 3 31 31 H 1.08998 * 109.47278 * 178.95820 * 3 2 1 32 32 H 1.08999 * 109.46967 * 298.96309 * 3 2 1 33 33 H 1.09007 * 109.47074 * 58.95769 * 3 2 1 34 34 H 1.07994 * 125.84108 * 180.23792 * 6 5 4 35 35 H 1.09002 * 109.47285 * 334.68624 * 8 7 6 36 36 H 1.08994 * 109.47234 * 214.68874 * 8 7 6 37 37 H 0.96994 * 119.99799 * 0.02562 * 9 8 7 38 38 H 1.08007 * 119.98936 * 0.02562 * 11 10 9 39 39 H 1.08000 * 119.90826 * 180.25089 * 12 11 10 40 40 H 1.08002 * 120.01245 * 179.97438 * 15 13 12 41 41 H 0.97007 * 120.00356 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.46858 * 275.00636 * 27 26 4 43 43 H 1.08991 * 109.46822 * 35.00329 * 27 26 4 44 44 H 1.08997 * 109.46836 * 155.00445 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9653 -0.7221 1.0726 5 7 1.6713 -0.5205 2.3352 6 6 2.3330 -1.4113 3.0932 7 6 3.0704 -2.1899 2.2833 8 6 3.9724 -3.3214 2.7040 9 7 3.2393 -4.5871 2.6206 10 6 3.8728 -5.7864 2.9645 11 6 5.1947 -5.7788 3.3851 12 6 5.8175 -6.9636 3.7296 13 6 5.1266 -8.1618 3.6516 14 9 5.7406 -9.3169 3.9890 15 6 3.8097 -8.1785 3.2279 16 6 3.1785 -6.9933 2.8795 17 8 1.8860 -7.0072 2.4629 18 6 1.3090 -8.2144 2.2986 19 1 1.8444 -9.1109 2.5744 20 6 0.0284 -8.3050 1.7757 21 7 -0.6237 -7.2129 1.4393 22 14 -0.7717 -9.9777 1.5488 23 1 -0.8717 -10.6610 2.8635 24 1 -2.1312 -9.8029 0.9776 25 1 0.0519 -10.7990 0.6255 26 7 2.8403 -1.7608 0.9956 27 6 3.4263 -2.3177 -0.2261 28 1 -0.3634 0.4513 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0849 1.3424 0.0187 32 1 1.6611 1.8890 -0.8991 33 1 1.6309 1.9006 0.8805 34 1 2.2827 -1.4870 4.1693 35 1 4.3033 -3.1601 3.7300 36 1 4.8393 -3.3594 2.0445 37 1 2.3149 -4.5937 2.3270 38 1 5.7360 -4.8463 3.4478 39 1 6.8455 -6.9552 4.0607 40 1 3.2734 -9.1141 3.1676 41 1 -1.5201 -7.2762 1.0737 42 1 2.7428 -3.0503 -0.6557 43 1 3.5983 -1.5164 -0.9445 44 1 4.3736 -2.8010 0.0129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822470401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:24 Heat of formation + Delta-G solvation = 20.912779 kcal Electronic energy + Delta-G solvation = -28406.094510 eV Core-core repulsion = 24274.805979 eV Total energy + Delta-G solvation = -4131.288531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 18.12 seconds Orbital eigenvalues (eV) -49.62067 -43.13778 -40.85539 -38.46240 -38.02475 -36.17397 -34.91472 -34.27068 -31.68259 -30.90096 -28.96310 -28.64195 -27.96229 -27.31206 -26.52051 -24.97541 -23.49826 -22.64332 -21.62844 -20.74226 -19.99497 -19.31738 -18.29999 -17.74723 -17.41228 -16.98494 -16.87302 -16.62407 -16.42147 -15.99746 -15.74803 -15.58627 -15.45520 -15.25769 -15.07449 -14.90433 -14.79159 -14.32893 -13.93976 -13.83436 -13.72004 -13.55687 -13.39452 -13.22437 -13.10640 -12.96746 -12.92385 -12.75927 -12.43871 -12.23171 -12.03241 -11.51721 -11.24604 -10.79852 -10.72295 -10.61104 -9.97367 -9.41686 -9.36773 -8.47043 -8.03514 -6.09618 0.50842 0.63901 0.75114 1.34012 1.42788 1.48167 1.52563 1.88630 2.15689 2.77123 2.78772 2.85173 3.11934 3.35790 3.54143 3.67695 3.87410 3.92191 4.03944 4.13463 4.26893 4.28387 4.31607 4.37278 4.52015 4.54059 4.55855 4.58905 4.67287 4.80069 4.81001 4.86810 4.89256 5.03580 5.12055 5.13109 5.34362 5.46073 5.47916 5.49033 5.66916 5.73150 5.95462 6.05555 6.40399 6.53230 6.72451 6.93545 6.98808 7.76137 8.74288 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009796 B = 0.003603 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.584848 B = 7769.655332 C =10104.603374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.477 5.477 3 C 0.038 3.962 4 C 0.363 3.637 5 N -0.537 5.537 6 C -0.013 4.013 7 C -0.033 4.033 8 C 0.214 3.786 9 N -0.744 5.744 10 C 0.156 3.844 11 C -0.131 4.131 12 C -0.163 4.163 13 C 0.065 3.935 14 F -0.156 7.156 15 C -0.248 4.248 16 C 0.081 3.919 17 O -0.217 6.217 18 C -0.408 4.408 19 H 0.093 0.907 20 C -0.015 4.015 21 N -0.913 5.913 22 Si 1.008 2.992 23 H -0.261 1.261 24 H -0.271 1.271 25 H -0.260 1.260 26 N -0.439 5.439 27 C 0.077 3.923 28 H 0.035 0.965 29 H 0.109 0.891 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.033 0.967 34 H 0.183 0.817 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.393 0.607 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.120 0.880 41 H 0.270 0.730 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.989 13.966 -3.045 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.202 5.202 3 C -0.109 4.109 4 C 0.011 3.989 5 N -0.260 5.260 6 C -0.163 4.163 7 C -0.149 4.149 8 C 0.090 3.910 9 N -0.376 5.376 10 C 0.053 3.947 11 C -0.154 4.154 12 C -0.183 4.183 13 C 0.044 3.956 14 F -0.135 7.135 15 C -0.269 4.269 16 C 0.028 3.972 17 O -0.124 6.124 18 C -0.484 4.484 19 H 0.111 0.889 20 C -0.213 4.213 21 N -0.551 5.551 22 Si 0.828 3.172 23 H -0.186 1.186 24 H -0.196 1.196 25 H -0.185 1.185 26 N -0.123 5.123 27 C -0.065 4.065 28 H 0.054 0.946 29 H 0.127 0.873 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.052 0.948 34 H 0.200 0.800 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.226 0.774 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.137 0.863 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.125 0.875 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.496 14.645 -3.460 17.794 hybrid contribution -0.929 -1.609 0.249 1.874 sum 8.568 13.036 -3.211 15.927 Atomic orbital electron populations 1.22385 0.83420 1.02428 1.02527 1.58885 1.10306 1.15551 1.35425 1.22472 1.00540 0.85114 1.02728 1.21127 0.95615 0.92518 0.89593 1.70651 1.26476 1.27251 1.01576 1.22317 0.98021 0.95501 1.00468 1.21281 1.07367 1.02696 0.83529 1.19661 0.91473 0.77451 1.02429 1.44594 1.14899 1.02603 1.75533 1.17360 0.92582 0.83711 1.01018 1.20426 0.91250 0.99325 1.04443 1.20818 1.01463 0.89737 1.06240 1.17367 0.90944 0.82260 1.05057 1.91382 1.82884 1.48541 1.90733 1.20845 0.95757 0.98903 1.11399 1.19098 0.85907 0.93064 0.99101 1.83868 1.19989 1.31957 1.76576 1.21609 0.99496 0.83451 1.43850 0.88947 1.26338 0.95977 1.03298 0.95665 1.70151 1.13067 1.29945 1.41951 0.84787 0.77494 0.75471 0.79407 1.18604 1.19590 1.18487 1.45508 1.34124 1.24992 1.07676 1.22140 0.99530 1.00521 0.84276 0.94579 0.87285 0.93009 0.91262 0.87565 0.94798 0.80025 0.87984 0.89864 0.77361 0.81447 0.82419 0.86256 0.92058 0.91674 0.87496 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 9.46 127.69 1.21 2.08 16 2 N -0.48 -10.97 4.98 -756.52 -3.77 -14.74 16 3 C 0.04 0.65 9.53 127.69 1.22 1.87 16 4 C 0.36 10.34 6.37 260.37 1.66 12.00 16 5 N -0.54 -17.04 11.04 -197.94 -2.18 -19.22 16 6 C -0.01 -0.37 11.76 83.42 0.98 0.61 16 7 C -0.03 -0.90 6.33 40.76 0.26 -0.65 16 8 C 0.21 5.09 5.14 85.63 0.44 5.53 16 9 N -0.74 -25.36 5.72 -342.58 -1.96 -27.32 16 10 C 0.16 5.81 6.67 38.27 0.26 6.07 16 11 C -0.13 -3.80 9.31 22.38 0.21 -3.59 16 12 C -0.16 -4.93 10.02 22.33 0.22 -4.71 16 13 C 0.06 2.46 7.29 22.37 0.16 2.62 16 14 F -0.16 -5.81 17.26 44.97 0.78 -5.03 16 15 C -0.25 -11.10 9.14 22.41 0.20 -10.90 16 16 C 0.08 3.81 6.67 22.69 0.15 3.97 16 17 O -0.22 -12.27 9.00 -23.02 -0.21 -12.48 16 18 C -0.41 -23.29 9.49 67.91 0.64 -22.64 16 19 H 0.09 5.00 5.21 -2.91 -0.02 4.99 16 20 C -0.01 -0.81 5.49 84.82 0.47 -0.35 16 21 N -0.91 -54.46 13.67 21.61 0.30 -54.17 16 22 Si 1.01 43.00 29.55 68.60 2.03 45.03 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 26 N -0.44 -11.66 3.20 -534.52 -1.71 -13.37 16 27 C 0.08 1.60 11.00 127.77 1.41 3.00 16 28 H 0.04 0.86 8.00 -2.39 -0.02 0.84 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.13 8.11 -2.39 -0.02 1.11 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.10 2.00 7.95 -2.39 -0.02 1.99 16 36 H 0.08 1.62 7.15 -2.39 -0.02 1.60 16 37 H 0.39 16.43 7.83 -92.71 -0.73 15.71 16 38 H 0.17 3.35 6.73 -2.91 -0.02 3.33 16 39 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.12 5.64 5.64 -2.91 -0.02 5.63 16 41 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 42 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.10 1.73 7.19 -2.39 -0.02 1.71 16 Total: -1.00 -72.35 376.51 3.07 -69.28 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: 0.32 Total: 37.11 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 9.49 Total: -5.09 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -9.33 Total: -128.82 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.21 Total: -12.48 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.78 Total: -5.03 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -72.35 3.07 -69.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822470401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.191 kcal (2) G-P(sol) polarization free energy of solvation -72.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.12 seconds