Wall clock time and date at job start Tue Mar 31 2020 20:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36011 * 126.35120 * 2 1 4 4 C 1.50696 * 124.95124 * 359.97438 * 3 2 1 5 5 N 1.46507 * 109.46840 * 89.99751 * 4 3 2 6 6 C 1.34781 * 119.99672 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99989 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.99864 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.47647 * 319.99990 * 8 6 5 10 10 N 1.46896 * 109.47114 * 199.99775 * 8 6 5 11 11 C 1.53004 * 109.47152 * 80.00159 * 8 6 5 12 12 C 1.53001 * 109.47274 * 184.99855 * 11 8 6 13 13 C 1.50694 * 109.47242 * 179.97438 * 12 11 8 14 14 H 1.08003 * 120.00245 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99857 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99915 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99776 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47566 * 59.99703 * 17 15 13 19 19 H 1.48501 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46814 * 299.99914 * 17 15 13 21 21 N 1.30116 * 110.09886 * 179.75695 * 3 2 1 22 22 C 1.35789 * 109.65360 * 0.36755 * 21 3 2 23 23 C 1.39778 * 133.54055 * 179.97438 * 22 21 3 24 24 C 1.37766 * 119.74893 * 179.74574 * 23 22 21 25 25 F 1.35102 * 119.76470 * 179.97438 * 24 23 22 26 26 C 1.38987 * 120.47573 * 359.93104 * 24 23 22 27 27 C 1.37815 * 120.43204 * 0.03243 * 26 24 23 28 28 C 1.38172 * 126.34748 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47305 * 270.02405 * 1 2 3 30 30 H 1.09002 * 109.47318 * 30.02174 * 1 2 3 31 31 H 1.08998 * 109.47620 * 150.01973 * 1 2 3 32 32 H 1.08999 * 109.47199 * 209.99382 * 4 3 2 33 33 H 1.08997 * 109.47342 * 329.99633 * 4 3 2 34 34 H 0.96993 * 119.99956 * 0.02562 * 5 4 3 35 35 H 1.00897 * 111.00359 * 299.99917 * 10 8 6 36 36 H 1.00898 * 111.00212 * 63.95650 * 10 8 6 37 37 H 1.09005 * 109.46888 * 304.99818 * 11 8 6 38 38 H 1.08999 * 109.47406 * 64.99585 * 11 8 6 39 39 H 1.08996 * 109.47170 * 300.00006 * 12 11 8 40 40 H 1.09005 * 109.46870 * 59.99898 * 12 11 8 41 41 H 0.97003 * 119.99544 * 179.97438 * 16 15 13 42 42 H 1.08002 * 120.12325 * 359.67461 * 23 22 21 43 43 H 1.08001 * 119.78423 * 180.02562 * 26 24 23 44 44 H 1.08004 * 120.06886 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0954 0.0000 4 6 1.7881 2.5229 -0.0006 5 7 1.6310 2.9857 1.3806 6 6 1.2066 4.2411 1.6264 7 8 0.9552 4.9877 0.7043 8 6 1.0445 4.7171 3.0469 9 1 0.6169 3.9173 3.6516 10 7 0.1507 5.8826 3.0739 11 6 2.4110 5.1092 3.6126 12 6 2.2654 5.4736 5.0914 13 6 3.6114 5.8592 5.6486 14 1 4.4834 5.8461 5.0116 15 6 3.7294 6.2297 6.9715 16 7 2.6674 6.2460 7.7470 17 14 5.3978 6.7083 7.6621 18 1 5.9266 7.8768 6.9137 19 1 5.2564 7.0619 9.0974 20 1 6.3367 5.5661 7.5242 21 7 3.5203 0.7313 0.0052 22 6 3.6009 -0.6242 0.0007 23 6 4.6695 -1.5253 0.0025 24 6 4.4211 -2.8803 0.0017 25 9 5.4536 -3.7515 0.0030 26 6 3.1157 -3.3577 0.0006 27 6 2.0520 -2.4814 -0.0005 28 6 2.2839 -1.1129 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5135 32 1 2.5149 3.1522 -0.5142 33 1 0.8288 2.5816 -0.5148 34 1 1.8331 2.3890 2.1180 35 1 0.5253 6.6384 2.5202 36 1 -0.7772 5.6339 2.7655 37 1 3.1003 4.2709 3.5110 38 1 2.7989 5.9672 3.0635 39 1 1.5760 6.3117 5.1929 40 1 1.8774 4.6155 5.6405 41 1 2.7506 6.5063 8.6777 42 1 5.6861 -1.1605 0.0034 43 1 2.9338 -4.4222 0.0004 44 1 1.0400 -2.8587 -0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829155556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:31 Heat of formation + Delta-G solvation = -14.553825 kcal Electronic energy + Delta-G solvation = -27495.692519 eV Core-core repulsion = 23362.866040 eV Total energy + Delta-G solvation = -4132.826478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.15582 -42.70057 -39.88576 -37.66543 -35.42419 -34.89109 -34.75430 -32.81169 -30.83416 -30.49357 -30.09391 -27.83681 -27.33120 -25.97356 -23.63565 -22.79356 -22.54733 -20.79411 -20.69513 -19.87692 -18.45126 -17.79331 -17.36919 -16.91497 -16.54619 -16.24321 -15.96105 -15.69850 -15.64970 -15.43337 -14.95910 -14.57799 -14.42085 -14.16668 -13.92119 -13.69622 -13.62987 -13.49428 -13.23193 -13.02681 -12.86898 -12.32460 -12.03888 -11.92937 -11.75142 -11.57305 -10.86706 -10.84065 -10.72162 -10.58921 -10.40780 -10.24941 -9.81596 -9.40610 -9.31984 -9.01638 -8.80094 -8.55435 -8.38396 -8.22899 -5.93590 -3.95610 0.31000 0.87040 1.99844 2.10726 2.61603 3.11979 3.31560 3.37659 3.41709 3.44744 3.47889 3.85792 3.97908 4.14628 4.45202 4.50838 4.56455 4.65054 4.72826 4.74307 4.81437 4.90723 5.00888 5.10555 5.22125 5.29600 5.41905 5.46271 5.51721 5.69688 5.77486 5.82245 5.97975 6.11897 6.37653 6.42117 6.53663 6.62982 7.06351 7.23539 7.38142 7.44910 7.72732 7.76001 7.95042 8.11541 8.13171 8.48496 9.12054 9.67672 11.17304 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.002517 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.080768 B =11122.789889 C =12999.811950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.482 5.482 3 C 0.276 3.724 4 C 0.198 3.802 5 N -0.727 5.727 6 C 0.489 3.511 7 O -0.549 6.549 8 C 0.081 3.919 9 H 0.098 0.902 10 N -0.806 5.806 11 C -0.097 4.097 12 C 0.032 3.968 13 C -0.523 4.523 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 N -0.469 5.469 22 C 0.072 3.928 23 C -0.096 4.096 24 C 0.091 3.909 25 F -0.136 7.136 26 C -0.132 4.132 27 C -0.078 4.078 28 C 0.040 3.960 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.407 0.593 35 H 0.349 0.651 36 H 0.334 0.666 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.012 0.988 41 H 0.260 0.740 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 -19.845 -18.911 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.172 5.172 3 C 0.010 3.990 4 C 0.073 3.927 5 N -0.382 5.382 6 C 0.275 3.725 7 O -0.426 6.426 8 C -0.035 4.035 9 H 0.116 0.884 10 N -0.333 5.333 11 C -0.135 4.135 12 C -0.005 4.005 13 C -0.562 4.562 14 H 0.070 0.930 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 N -0.188 5.188 22 C -0.047 4.047 23 C -0.117 4.117 24 C 0.069 3.931 25 F -0.115 7.115 26 C -0.152 4.152 27 C -0.099 4.099 28 C -0.069 4.069 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.242 0.758 35 H 0.163 0.837 36 H 0.145 0.855 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.449 -18.709 -18.599 27.157 hybrid contribution 0.433 -0.993 -0.315 1.129 sum -6.015 -19.703 -18.914 27.966 Atomic orbital electron populations 1.22101 0.75531 1.04959 1.04210 1.45204 1.07431 1.04767 1.59838 1.23532 0.85392 0.90531 0.99552 1.19624 1.02072 0.84829 0.86215 1.46163 1.69588 1.15323 1.07143 1.22889 0.74849 0.80314 0.94493 1.90665 1.50802 1.54351 1.46790 1.21855 0.98444 0.94479 0.88700 0.88368 1.58990 1.04572 1.07922 1.61854 1.21686 0.90346 1.00328 1.01134 1.19006 0.97011 0.97485 0.86992 1.21248 0.94421 1.45280 0.95212 0.92976 1.24984 0.96361 0.95742 0.97197 1.69960 1.28472 1.48470 1.06367 0.86708 0.84657 0.79017 0.77900 1.20282 1.21345 1.20325 1.70501 1.17096 1.10446 1.20781 1.18624 0.91399 0.90192 1.04525 1.20108 0.99311 0.89844 1.02404 1.17158 0.84270 0.86527 1.05139 1.91517 1.57323 1.68500 1.94156 1.20854 0.90228 1.00714 1.03412 1.19728 0.99573 0.88290 1.02279 1.18888 0.91192 0.89411 1.07448 0.90013 0.89015 0.89377 0.87682 0.89449 0.75835 0.83671 0.85459 0.92676 0.92671 0.94658 0.96938 0.93050 0.83732 0.83823 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 10.96 59.85 0.66 0.98 16 2 N -0.48 -4.08 3.21 -118.50 -0.38 -4.46 16 3 C 0.28 2.91 7.22 -154.85 -1.12 1.79 16 4 C 0.20 2.00 5.96 -5.19 -0.03 1.97 16 5 N -0.73 -8.30 5.55 -61.47 -0.34 -8.64 16 6 C 0.49 6.95 7.07 -10.99 -0.08 6.87 16 7 O -0.55 -9.11 16.25 5.56 0.09 -9.02 16 8 C 0.08 1.28 3.15 -68.87 -0.22 1.06 16 9 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 10 N -0.81 -12.73 8.44 -5.66 -0.05 -12.78 16 11 C -0.10 -1.91 4.78 -26.73 -0.13 -2.04 16 12 C 0.03 0.81 4.86 -27.89 -0.14 0.68 16 13 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 14 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 N -0.47 -6.14 11.27 -8.24 -0.09 -6.23 16 22 C 0.07 0.86 7.23 -84.70 -0.61 0.25 16 23 C -0.10 -1.03 10.07 -39.18 -0.39 -1.43 16 24 C 0.09 0.86 7.28 -39.48 -0.29 0.57 16 25 F -0.14 -1.36 17.26 2.25 0.04 -1.32 16 26 C -0.13 -0.97 10.00 -39.46 -0.39 -1.36 16 27 C -0.08 -0.56 10.04 -39.53 -0.40 -0.96 16 28 C 0.04 0.38 6.87 -83.96 -0.58 -0.19 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.32 7.00 -51.93 -0.36 -0.05 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 0.72 7.01 -51.93 -0.36 0.35 16 34 H 0.41 4.37 8.46 -40.82 -0.35 4.03 16 35 H 0.35 5.63 8.58 -39.29 -0.34 5.29 16 36 H 0.33 4.43 9.06 -39.29 -0.36 4.08 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -34.76 381.26 -9.33 -44.09 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.94 Total: 7.28 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -4.12 Total: -5.35 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.13 Total: -58.29 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.76 -9.33 -44.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829155556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.536 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds