Wall clock time and date at job start Tue Mar 31 2020 20:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36011 * 126.35120 * 2 1 4 4 C 1.50696 * 124.95124 * 359.97438 * 3 2 1 5 5 N 1.46507 * 109.46840 * 89.99751 * 4 3 2 6 6 C 1.34781 * 119.99672 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99989 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.99864 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.47647 * 319.99990 * 8 6 5 10 10 N 1.46896 * 109.47114 * 199.99775 * 8 6 5 11 11 C 1.53004 * 109.47152 * 80.00159 * 8 6 5 12 12 C 1.53001 * 109.47274 * 184.99855 * 11 8 6 13 13 C 1.50694 * 109.47242 * 179.97438 * 12 11 8 14 14 H 1.08003 * 120.00245 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99857 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99915 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99776 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47566 * 59.99703 * 17 15 13 19 19 H 1.48501 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46814 * 299.99914 * 17 15 13 21 21 N 1.30116 * 110.09886 * 179.75695 * 3 2 1 22 22 C 1.35789 * 109.65360 * 0.36755 * 21 3 2 23 23 C 1.39778 * 133.54055 * 179.97438 * 22 21 3 24 24 C 1.37766 * 119.74893 * 179.74574 * 23 22 21 25 25 F 1.35102 * 119.76470 * 179.97438 * 24 23 22 26 26 C 1.38987 * 120.47573 * 359.93104 * 24 23 22 27 27 C 1.37815 * 120.43204 * 0.03243 * 26 24 23 28 28 C 1.38172 * 126.34748 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47305 * 270.02405 * 1 2 3 30 30 H 1.09002 * 109.47318 * 30.02174 * 1 2 3 31 31 H 1.08998 * 109.47620 * 150.01973 * 1 2 3 32 32 H 1.08999 * 109.47199 * 209.99382 * 4 3 2 33 33 H 1.08997 * 109.47342 * 329.99633 * 4 3 2 34 34 H 0.96993 * 119.99956 * 0.02562 * 5 4 3 35 35 H 1.00897 * 111.00359 * 299.99917 * 10 8 6 36 36 H 1.00898 * 111.00212 * 63.95650 * 10 8 6 37 37 H 1.09005 * 109.46888 * 304.99818 * 11 8 6 38 38 H 1.08999 * 109.47406 * 64.99585 * 11 8 6 39 39 H 1.08996 * 109.47170 * 300.00006 * 12 11 8 40 40 H 1.09005 * 109.46870 * 59.99898 * 12 11 8 41 41 H 0.97003 * 119.99544 * 179.97438 * 16 15 13 42 42 H 1.08002 * 120.12325 * 359.67461 * 23 22 21 43 43 H 1.08001 * 119.78423 * 180.02562 * 26 24 23 44 44 H 1.08004 * 120.06886 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0954 0.0000 4 6 1.7881 2.5229 -0.0006 5 7 1.6310 2.9857 1.3806 6 6 1.2066 4.2411 1.6264 7 8 0.9552 4.9877 0.7043 8 6 1.0445 4.7171 3.0469 9 1 0.6169 3.9173 3.6516 10 7 0.1507 5.8826 3.0739 11 6 2.4110 5.1092 3.6126 12 6 2.2654 5.4736 5.0914 13 6 3.6114 5.8592 5.6486 14 1 4.4834 5.8461 5.0116 15 6 3.7294 6.2297 6.9715 16 7 2.6674 6.2460 7.7470 17 14 5.3978 6.7083 7.6621 18 1 5.9266 7.8768 6.9137 19 1 5.2564 7.0619 9.0974 20 1 6.3367 5.5661 7.5242 21 7 3.5203 0.7313 0.0052 22 6 3.6009 -0.6242 0.0007 23 6 4.6695 -1.5253 0.0025 24 6 4.4211 -2.8803 0.0017 25 9 5.4536 -3.7515 0.0030 26 6 3.1157 -3.3577 0.0006 27 6 2.0520 -2.4814 -0.0005 28 6 2.2839 -1.1129 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5135 32 1 2.5149 3.1522 -0.5142 33 1 0.8288 2.5816 -0.5148 34 1 1.8331 2.3890 2.1180 35 1 0.5253 6.6384 2.5202 36 1 -0.7772 5.6339 2.7655 37 1 3.1003 4.2709 3.5110 38 1 2.7989 5.9672 3.0635 39 1 1.5760 6.3117 5.1929 40 1 1.8774 4.6155 5.6405 41 1 2.7506 6.5063 8.6777 42 1 5.6861 -1.1605 0.0034 43 1 2.9338 -4.4222 0.0004 44 1 1.0400 -2.8587 -0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829155556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:17 Heat of formation + Delta-G solvation = -39.316347 kcal Electronic energy + Delta-G solvation = -27496.766302 eV Core-core repulsion = 23362.866040 eV Total energy + Delta-G solvation = -4133.900262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 13.93 seconds Orbital eigenvalues (eV) -49.90631 -43.40492 -41.05228 -38.35583 -36.87355 -35.94412 -35.41252 -34.81330 -31.92981 -31.46900 -31.27541 -28.80970 -27.92494 -27.47533 -25.20696 -23.55795 -23.28474 -22.37727 -21.50784 -21.10752 -19.16207 -18.83535 -18.29617 -18.08400 -17.78921 -17.25640 -17.04597 -16.77206 -16.47965 -16.41516 -16.25543 -15.92234 -15.31528 -15.23878 -15.07786 -14.57756 -14.27955 -14.23240 -14.13554 -13.99851 -13.94528 -13.74234 -13.44242 -13.34467 -12.78714 -12.58071 -12.54925 -12.42584 -12.27095 -11.78153 -11.65967 -11.48053 -11.26902 -11.15932 -11.02112 -10.48782 -10.33630 -9.70103 -9.41670 -9.22734 -8.14277 -6.23993 -0.37443 0.18018 1.28461 1.41158 1.43285 1.43670 1.45951 1.51608 2.22643 2.44351 2.56942 2.70009 3.17840 3.18794 3.34169 3.56811 3.72866 3.78793 3.88063 4.00171 4.03328 4.12117 4.14476 4.31938 4.32482 4.44968 4.49674 4.57311 4.67938 4.78409 4.93453 4.94459 5.06133 5.13132 5.17656 5.25822 5.28372 5.57150 5.71931 5.85089 5.90977 5.99146 6.09142 6.30945 6.31875 6.56486 6.64034 6.94551 7.01083 7.43925 8.96635 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.002517 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.080768 B =11122.789889 C =12999.811950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.473 5.473 3 C 0.271 3.729 4 C 0.204 3.796 5 N -0.713 5.713 6 C 0.499 3.501 7 O -0.571 6.571 8 C 0.089 3.911 9 H 0.113 0.887 10 N -0.818 5.818 11 C -0.084 4.084 12 C 0.041 3.959 13 C -0.546 4.546 14 H 0.053 0.947 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.956 3.044 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.269 1.269 21 N -0.512 5.512 22 C 0.038 3.962 23 C -0.120 4.120 24 C 0.085 3.915 25 F -0.142 7.142 26 C -0.126 4.126 27 C -0.065 4.065 28 C 0.035 3.965 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.412 0.588 35 H 0.346 0.654 36 H 0.349 0.651 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.009 0.991 40 H -0.006 1.006 41 H 0.262 0.738 42 H 0.136 0.864 43 H 0.175 0.825 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 -21.678 -19.626 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.162 5.162 3 C 0.005 3.995 4 C 0.079 3.921 5 N -0.367 5.367 6 C 0.285 3.715 7 O -0.450 6.450 8 C -0.027 4.027 9 H 0.130 0.870 10 N -0.347 5.347 11 C -0.123 4.123 12 C 0.003 3.997 13 C -0.584 4.584 14 H 0.071 0.929 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.781 3.219 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.194 1.194 21 N -0.234 5.234 22 C -0.081 4.081 23 C -0.141 4.141 24 C 0.063 3.937 25 F -0.121 7.121 26 C -0.146 4.146 27 C -0.086 4.086 28 C -0.075 4.075 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.247 0.753 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.012 0.988 41 H 0.071 0.929 42 H 0.153 0.847 43 H 0.193 0.807 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.651 -20.576 -19.328 29.248 hybrid contribution 0.776 -0.492 -0.108 0.925 sum -6.875 -21.068 -19.436 29.476 Atomic orbital electron populations 1.22485 0.72910 1.06855 1.05433 1.45367 1.08751 1.03670 1.58376 1.23407 0.85264 0.91029 0.99842 1.19648 1.02943 0.84473 0.85074 1.45994 1.68102 1.14417 1.08194 1.22325 0.75039 0.80905 0.93277 1.90664 1.52069 1.55181 1.47050 1.21601 0.96216 0.94904 0.89973 0.86971 1.58950 1.05515 1.07990 1.62250 1.21401 0.93148 1.00124 0.97588 1.18813 0.95034 0.95568 0.90251 1.21722 0.95711 1.45239 0.95745 0.92875 1.25861 1.00241 0.95670 0.97662 1.70083 1.30692 1.49350 1.06721 0.85638 0.80002 0.78972 0.77246 1.19574 1.20761 1.19376 1.70393 1.18931 1.11650 1.22383 1.18882 0.92991 0.90085 1.06154 1.20165 0.99063 0.90714 1.04168 1.17376 0.85169 0.85964 1.05142 1.91499 1.57897 1.68503 1.94214 1.21224 0.89004 1.02395 1.01947 1.20163 1.01344 0.86910 1.00136 1.19183 0.90423 0.90623 1.07315 0.89040 0.87901 0.86874 0.89034 0.86947 0.75267 0.83985 0.83715 0.92010 0.93758 0.97296 0.98766 0.92895 0.84658 0.80725 0.80942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 10.96 127.77 1.40 1.74 16 2 N -0.47 -6.99 3.21 -528.81 -1.70 -8.69 16 3 C 0.27 5.50 7.22 137.93 1.00 6.50 16 4 C 0.20 3.87 5.96 85.63 0.51 4.38 16 5 N -0.71 -15.36 5.55 -466.79 -2.59 -17.95 16 6 C 0.50 13.63 7.07 87.65 0.62 14.25 16 7 O -0.57 -18.31 16.25 -3.02 -0.05 -18.35 16 8 C 0.09 2.74 3.15 44.17 0.14 2.88 16 9 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 10 N -0.82 -25.55 8.44 -171.82 -1.45 -27.00 16 11 C -0.08 -3.35 4.78 30.60 0.15 -3.20 16 12 C 0.04 2.09 4.86 29.85 0.15 2.24 16 13 C -0.55 -31.29 9.11 25.60 0.23 -31.05 16 14 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 15 C 0.00 0.21 5.46 84.66 0.46 0.67 16 16 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 17 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 N -0.51 -13.73 11.27 -179.98 -2.03 -15.76 16 22 C 0.04 0.92 7.23 39.45 0.29 1.20 16 23 C -0.12 -2.70 10.07 22.53 0.23 -2.47 16 24 C 0.08 1.56 7.28 22.34 0.16 1.72 16 25 F -0.14 -2.80 17.26 44.97 0.78 -2.03 16 26 C -0.13 -1.51 10.00 22.35 0.22 -1.29 16 27 C -0.07 -0.72 10.04 22.30 0.22 -0.49 16 28 C 0.03 0.61 6.87 38.82 0.27 0.87 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.10 0.35 7.00 -2.39 -0.02 0.33 16 31 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.11 1.59 7.01 -2.39 -0.02 1.57 16 34 H 0.41 8.31 8.46 -92.71 -0.78 7.53 16 35 H 0.35 11.16 8.58 -89.70 -0.77 10.39 16 36 H 0.35 8.93 9.06 -89.70 -0.81 8.11 16 37 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.01 0.49 7.75 -2.39 -0.02 0.47 16 40 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 41 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 44 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -77.07 381.26 0.02 -77.06 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -1.30 Total: 24.13 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 6.04 Total: -2.06 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -7.48 Total: -125.75 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.05 Total: -18.35 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -77.07 0.02 -77.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829155556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.739 kcal (2) G-P(sol) polarization free energy of solvation -77.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.93 seconds