Wall clock time and date at job start Tue Mar 31 2020 21:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46951 * 160.29256 * 3 2 1 5 5 N 1.46504 * 109.46990 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00517 * 270.00060 * 5 4 3 7 7 C 1.50696 * 109.47276 * 270.00225 * 6 5 4 8 8 H 1.08000 * 119.99974 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00125 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99819 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00023 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47577 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47323 * 119.99824 * 11 9 7 14 14 H 1.48499 * 109.47424 * 239.99866 * 11 9 7 15 15 C 1.34776 * 119.99667 * 90.00098 * 5 4 3 16 16 O 1.21281 * 120.00256 * 179.97438 * 15 5 4 17 17 C 1.50706 * 120.00132 * 359.97438 * 15 5 4 18 18 O 1.45201 * 109.47106 * 179.97438 * 17 15 5 19 19 C 1.34227 * 116.99780 * 180.02562 * 18 17 15 20 20 O 1.20822 * 120.00338 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.99748 * 180.02562 * 19 18 17 22 22 C 1.53950 * 113.57669 * 180.02562 * 21 19 18 23 23 C 1.52906 * 86.78208 * 220.58456 * 22 21 19 24 24 C 1.52913 * 121.13846 * 150.61759 * 23 22 21 25 25 C 1.53952 * 86.78179 * 100.82243 * 24 23 22 26 26 C 1.53068 * 121.06931 * 259.16126 * 23 22 21 27 27 C 1.52907 * 88.04368 * 24.89826 * 23 22 21 28 28 H 1.08997 * 109.47159 * 40.29283 * 3 2 1 29 29 H 1.08998 * 109.47409 * 280.29540 * 3 2 1 30 30 H 1.08999 * 109.46927 * 60.00510 * 4 3 2 31 31 H 1.08999 * 109.47127 * 299.99828 * 4 3 2 32 32 H 1.09000 * 109.46969 * 30.00006 * 6 5 4 33 33 H 1.09002 * 109.47459 * 149.99909 * 6 5 4 34 34 H 0.96996 * 120.00101 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.46796 * 59.99904 * 17 15 5 36 36 H 1.08994 * 109.47154 * 299.99944 * 17 15 5 37 37 H 1.09000 * 112.82433 * 311.08740 * 21 19 18 38 38 H 1.09003 * 113.66331 * 106.11617 * 22 21 19 39 39 H 1.09003 * 113.66300 * 335.05509 * 22 21 19 40 40 H 1.09000 * 113.66161 * 346.35132 * 24 23 22 41 41 H 1.09004 * 113.74945 * 215.30259 * 24 23 22 42 42 H 1.09002 * 113.58142 * 139.33940 * 25 24 23 43 43 H 1.09004 * 113.57653 * 270.05541 * 25 24 23 44 44 H 1.09006 * 113.66752 * 144.67391 * 26 23 22 45 45 H 1.09001 * 113.71350 * 13.57398 * 26 23 22 46 46 H 1.09008 * 113.66358 * 89.56934 * 27 23 22 47 47 H 1.08997 * 113.66794 * 220.62745 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3589 -0.4864 5 7 4.5824 1.3598 -0.4859 6 6 5.3142 1.7882 0.7087 7 6 5.5645 3.2726 0.6390 8 1 5.2139 3.8401 -0.2103 9 6 6.2412 3.9063 1.6597 10 7 6.6677 3.2153 2.6942 11 14 6.5508 5.7463 1.5737 12 1 5.9741 6.2873 0.3167 13 1 5.9120 6.4108 2.7380 14 1 8.0131 6.0040 1.5977 15 6 5.2569 0.9664 -1.5844 16 8 6.4697 0.9676 -1.5842 17 6 4.5040 0.5252 -2.8131 18 8 5.4482 0.1541 -3.8520 19 6 4.9358 -0.2645 -5.0199 20 8 3.7381 -0.3186 -5.1693 21 6 5.8544 -0.6670 -6.1447 22 6 5.1113 -1.1214 -7.4140 23 6 6.1682 -2.2196 -7.5356 24 6 5.8419 -3.5620 -8.1911 25 6 6.5507 -3.0227 -9.4468 26 6 7.3382 -2.0853 -8.5134 27 6 6.3819 -2.1084 -6.0256 28 1 2.9717 -0.7830 -0.6646 29 1 2.9714 -0.1828 1.0111 30 1 2.7537 2.1426 0.1782 31 1 2.7539 1.5423 -1.4976 32 1 4.7250 1.5604 1.5969 33 1 6.2670 1.2611 0.7597 34 1 7.1434 3.6611 3.4124 35 1 3.8767 1.3429 -3.1680 36 1 3.8782 -0.3326 -2.5672 37 1 6.6353 0.0689 -6.3368 38 1 5.1427 -0.3925 -8.2239 39 1 4.1074 -1.4998 -7.2214 40 1 4.7744 -3.7327 -8.3307 41 1 6.3503 -4.4099 -7.7320 42 1 7.1738 -3.7634 -9.9479 43 1 5.8848 -2.4974 -10.1316 44 1 8.2688 -2.5164 -8.1441 45 1 7.4645 -1.0779 -8.9100 46 1 5.7350 -2.7641 -5.4427 47 1 7.4283 -2.1680 -5.7262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830642160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:36 Heat of formation + Delta-G solvation = -53.198655 kcal Electronic energy + Delta-G solvation = -28193.789484 eV Core-core repulsion = 24150.454794 eV Total energy + Delta-G solvation = -4043.334690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 26.29 seconds Orbital eigenvalues (eV) -41.31133 -40.04371 -39.07018 -36.94050 -36.43089 -35.28372 -34.99882 -32.95801 -30.92524 -29.51200 -27.11838 -26.29406 -26.10619 -25.73666 -24.10323 -22.97631 -22.24688 -20.29563 -18.86219 -18.37589 -17.86041 -17.70798 -16.78505 -16.65334 -16.44817 -16.15090 -15.75147 -15.57747 -15.45552 -14.76768 -14.60545 -14.31815 -13.91855 -13.74090 -13.19331 -13.18448 -13.05827 -12.72565 -12.60825 -12.48751 -12.41759 -12.39117 -12.19080 -12.11087 -11.79371 -11.36560 -11.34521 -11.30360 -11.06442 -10.97064 -10.77000 -10.70392 -10.64369 -10.49958 -10.45928 -10.23666 -10.11273 -9.75095 -9.14495 -8.51807 -7.97182 -6.13401 -4.18163 2.09343 2.40808 2.70587 2.79742 3.10980 3.26006 3.34412 3.37872 3.59986 3.99513 4.05442 4.11488 4.19304 4.28693 4.38039 4.43245 4.48823 4.78001 4.82815 4.98454 5.00572 5.03434 5.07418 5.13712 5.19647 5.22693 5.29243 5.37233 5.41313 5.42461 5.48459 5.56498 5.59818 5.63122 5.64524 5.75246 5.93897 5.99969 6.04474 6.12290 6.32437 6.82429 7.25372 7.33341 7.55534 7.67684 7.82644 8.08601 8.11757 8.71071 8.88341 9.47582 10.94851 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.002581 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.151467 B =10844.537306 C =12575.762016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.509 3.491 16 O -0.509 6.509 17 C 0.044 3.956 18 O -0.326 6.326 19 C 0.470 3.530 20 O -0.512 6.512 21 C -0.107 4.107 22 C -0.093 4.093 23 C -0.108 4.108 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.117 4.117 27 C -0.107 4.107 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.854 -12.396 -19.195 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.128 3.872 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.726 3.274 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.208 1.208 15 C 0.294 3.706 16 O -0.383 6.383 17 C -0.033 4.033 18 O -0.241 6.241 19 C 0.313 3.687 20 O -0.400 6.400 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.108 4.108 24 C -0.164 4.164 25 C -0.178 4.178 26 C -0.154 4.154 27 C -0.144 4.144 28 H 0.123 0.877 29 H 0.138 0.862 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.131 -12.369 -19.007 22.893 hybrid contribution 0.375 1.176 0.247 1.258 sum -2.757 -11.194 -18.760 22.019 Atomic orbital electron populations 1.81211 1.13008 1.08543 1.09186 1.29036 0.95047 0.93191 0.92930 1.19889 0.81533 1.01393 1.06427 1.21397 0.81950 0.95344 1.02674 1.48161 1.04980 1.64187 1.15227 1.19423 0.92701 0.95438 0.79684 1.21439 1.36905 0.92925 1.05644 0.92240 1.24916 0.95220 0.98631 0.95201 1.69922 1.38224 1.35924 1.09062 0.86444 0.78135 0.84926 0.77935 1.19774 1.20953 1.20841 1.19752 0.88178 0.79096 0.83605 1.90740 1.13278 1.52375 1.81923 1.22983 0.91344 1.01951 0.87030 1.86598 1.39955 1.75273 1.22240 1.23682 0.88647 0.73248 0.83106 1.90647 1.16836 1.50437 1.82087 1.22514 0.98611 0.99692 0.91750 1.22693 0.98460 0.96818 0.95045 1.22451 0.97498 0.96583 0.94270 1.22741 1.00924 0.96212 0.96473 1.22823 0.99339 0.99184 0.96438 1.22712 0.96512 1.00345 0.95854 1.22764 1.02510 0.93064 0.96112 0.87682 0.86203 0.88193 0.90652 0.94305 0.93338 0.92648 0.88563 0.88800 0.85587 0.90329 0.88173 0.91258 0.89775 0.91479 0.90218 0.89523 0.91095 0.89274 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.61 18.54 42.15 0.78 -5.82 16 2 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 3 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 4 C 0.11 1.47 5.17 -4.04 -0.02 1.45 16 5 N -0.59 -10.65 2.46 -175.06 -0.43 -11.08 16 6 C 0.25 5.68 5.16 -5.20 -0.03 5.66 16 7 C -0.53 -13.93 9.39 -34.44 -0.32 -14.26 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 11 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 C 0.51 9.49 7.75 -10.98 -0.09 9.41 16 16 O -0.51 -11.96 16.08 -14.10 -0.23 -12.19 16 17 C 0.04 0.64 4.50 36.01 0.16 0.80 16 18 O -0.33 -4.99 9.75 -45.90 -0.45 -5.44 16 19 C 0.47 6.17 7.49 36.01 0.27 6.44 16 20 O -0.51 -7.52 15.64 -18.75 -0.29 -7.81 16 21 C -0.11 -1.03 4.26 -90.79 -0.39 -1.42 16 22 C -0.09 -0.77 7.17 -26.28 -0.19 -0.96 16 23 C -0.11 -0.78 1.11 -154.63 -0.17 -0.95 16 24 C -0.13 -0.81 7.84 -26.28 -0.21 -1.02 16 25 C -0.14 -0.81 8.08 -25.75 -0.21 -1.02 16 26 C -0.12 -0.72 7.85 -26.20 -0.21 -0.93 16 27 C -0.11 -0.90 7.39 -26.28 -0.19 -1.09 16 28 H 0.11 0.89 7.22 -51.93 -0.37 0.52 16 29 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.10 1.26 7.39 -51.93 -0.38 0.88 16 36 H 0.09 1.10 7.18 -51.93 -0.37 0.73 16 37 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.94 7.43 -51.93 -0.39 0.55 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.77 8.09 -51.92 -0.42 0.35 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -33.65 401.55 -8.30 -41.95 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.27 Total: -2.62 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.18 Total: 5.33 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 1.09 Total: -41.28 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.97 Total: -25.44 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.65 -8.30 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830642160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.246 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.30 seconds