Wall clock time and date at job start Tue Mar 31 2020 21:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46951 * 160.29256 * 3 2 1 5 5 N 1.46504 * 109.46990 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00517 * 270.00060 * 5 4 3 7 7 C 1.50696 * 109.47276 * 270.00225 * 6 5 4 8 8 H 1.08000 * 119.99974 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00125 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99819 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00023 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47577 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47323 * 119.99824 * 11 9 7 14 14 H 1.48499 * 109.47424 * 239.99866 * 11 9 7 15 15 C 1.34776 * 119.99667 * 90.00098 * 5 4 3 16 16 O 1.21281 * 120.00256 * 179.97438 * 15 5 4 17 17 C 1.50706 * 120.00132 * 359.97438 * 15 5 4 18 18 O 1.45201 * 109.47106 * 179.97438 * 17 15 5 19 19 C 1.34227 * 116.99780 * 180.02562 * 18 17 15 20 20 O 1.20822 * 120.00338 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.99748 * 180.02562 * 19 18 17 22 22 C 1.53950 * 113.57669 * 180.02562 * 21 19 18 23 23 C 1.52906 * 86.78208 * 220.58456 * 22 21 19 24 24 C 1.52913 * 121.13846 * 150.61759 * 23 22 21 25 25 C 1.53952 * 86.78179 * 100.82243 * 24 23 22 26 26 C 1.53068 * 121.06931 * 259.16126 * 23 22 21 27 27 C 1.52907 * 88.04368 * 24.89826 * 23 22 21 28 28 H 1.08997 * 109.47159 * 40.29283 * 3 2 1 29 29 H 1.08998 * 109.47409 * 280.29540 * 3 2 1 30 30 H 1.08999 * 109.46927 * 60.00510 * 4 3 2 31 31 H 1.08999 * 109.47127 * 299.99828 * 4 3 2 32 32 H 1.09000 * 109.46969 * 30.00006 * 6 5 4 33 33 H 1.09002 * 109.47459 * 149.99909 * 6 5 4 34 34 H 0.96996 * 120.00101 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.46796 * 59.99904 * 17 15 5 36 36 H 1.08994 * 109.47154 * 299.99944 * 17 15 5 37 37 H 1.09000 * 112.82433 * 311.08740 * 21 19 18 38 38 H 1.09003 * 113.66331 * 106.11617 * 22 21 19 39 39 H 1.09003 * 113.66300 * 335.05509 * 22 21 19 40 40 H 1.09000 * 113.66161 * 346.35132 * 24 23 22 41 41 H 1.09004 * 113.74945 * 215.30259 * 24 23 22 42 42 H 1.09002 * 113.58142 * 139.33940 * 25 24 23 43 43 H 1.09004 * 113.57653 * 270.05541 * 25 24 23 44 44 H 1.09006 * 113.66752 * 144.67391 * 26 23 22 45 45 H 1.09001 * 113.71350 * 13.57398 * 26 23 22 46 46 H 1.09008 * 113.66358 * 89.56934 * 27 23 22 47 47 H 1.08997 * 113.66794 * 220.62745 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3589 -0.4864 5 7 4.5824 1.3598 -0.4859 6 6 5.3142 1.7882 0.7087 7 6 5.5645 3.2726 0.6390 8 1 5.2139 3.8401 -0.2103 9 6 6.2412 3.9063 1.6597 10 7 6.6677 3.2153 2.6942 11 14 6.5508 5.7463 1.5737 12 1 5.9741 6.2873 0.3167 13 1 5.9120 6.4108 2.7380 14 1 8.0131 6.0040 1.5977 15 6 5.2569 0.9664 -1.5844 16 8 6.4697 0.9676 -1.5842 17 6 4.5040 0.5252 -2.8131 18 8 5.4482 0.1541 -3.8520 19 6 4.9358 -0.2645 -5.0199 20 8 3.7381 -0.3186 -5.1693 21 6 5.8544 -0.6670 -6.1447 22 6 5.1113 -1.1214 -7.4140 23 6 6.1682 -2.2196 -7.5356 24 6 5.8419 -3.5620 -8.1911 25 6 6.5507 -3.0227 -9.4468 26 6 7.3382 -2.0853 -8.5134 27 6 6.3819 -2.1084 -6.0256 28 1 2.9717 -0.7830 -0.6646 29 1 2.9714 -0.1828 1.0111 30 1 2.7537 2.1426 0.1782 31 1 2.7539 1.5423 -1.4976 32 1 4.7250 1.5604 1.5969 33 1 6.2670 1.2611 0.7597 34 1 7.1434 3.6611 3.4124 35 1 3.8767 1.3429 -3.1680 36 1 3.8782 -0.3326 -2.5672 37 1 6.6353 0.0689 -6.3368 38 1 5.1427 -0.3925 -8.2239 39 1 4.1074 -1.4998 -7.2214 40 1 4.7744 -3.7327 -8.3307 41 1 6.3503 -4.4099 -7.7320 42 1 7.1738 -3.7634 -9.9479 43 1 5.8848 -2.4974 -10.1316 44 1 8.2688 -2.5164 -8.1441 45 1 7.4645 -1.0779 -8.9100 46 1 5.7350 -2.7641 -5.4427 47 1 7.4283 -2.1680 -5.7262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830642160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:26 Heat of formation + Delta-G solvation = -70.427352 kcal Electronic energy + Delta-G solvation = -28194.536577 eV Core-core repulsion = 24150.454794 eV Total energy + Delta-G solvation = -4044.081782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 8.78 seconds Orbital eigenvalues (eV) -42.16094 -41.07744 -40.31388 -38.07807 -37.53838 -36.71573 -35.65463 -34.88737 -32.24146 -30.88009 -28.67142 -27.01410 -26.74133 -26.49165 -25.38272 -24.54513 -23.06781 -21.17717 -20.27877 -19.15571 -18.90389 -18.65345 -18.39308 -17.89722 -17.72484 -17.41810 -16.86629 -16.32892 -16.27773 -16.11936 -15.81548 -15.67713 -14.98948 -14.85061 -14.45171 -14.24184 -13.97835 -13.79172 -13.65649 -13.59914 -13.58380 -13.35289 -13.17573 -12.99246 -12.97164 -12.94303 -12.73178 -12.54554 -12.20226 -12.06337 -12.01459 -11.88853 -11.74778 -11.65275 -11.57514 -11.08871 -11.00629 -10.79988 -10.65781 -10.59050 -9.58536 -8.18863 -6.30506 1.08553 1.30150 1.39927 1.42897 1.52821 1.57921 1.78744 1.81619 2.32360 2.45361 3.03484 3.13912 3.37188 3.46973 3.48472 3.55631 3.63908 3.79939 3.90340 3.98401 4.00549 4.07097 4.09779 4.15377 4.37079 4.51276 4.59394 4.71032 4.76340 4.78588 4.89137 4.95446 5.00275 5.00700 5.03265 5.05573 5.11354 5.16679 5.28376 5.32181 5.35426 5.53526 5.56240 5.61314 5.83099 6.10880 6.53162 6.58691 6.68346 6.78627 7.25040 7.41994 8.88373 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.002581 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.151467 B =10844.537306 C =12575.762016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.245 3.755 3 C -0.039 4.039 4 C 0.108 3.892 5 N -0.590 5.590 6 C 0.260 3.740 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.012 3.988 10 N -0.924 5.924 11 Si 0.958 3.042 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.285 1.285 15 C 0.506 3.494 16 O -0.568 6.568 17 C 0.052 3.948 18 O -0.347 6.347 19 C 0.471 3.529 20 O -0.529 6.529 21 C -0.111 4.111 22 C -0.089 4.089 23 C -0.104 4.104 24 C -0.128 4.128 25 C -0.137 4.137 26 C -0.116 4.116 27 C -0.108 4.108 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.008 0.992 34 H 0.266 0.734 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -12.638 -20.859 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.073 4.073 3 C -0.080 4.080 4 C -0.017 4.017 5 N -0.322 5.322 6 C 0.139 3.861 7 C -0.580 4.580 8 H 0.072 0.928 9 C -0.187 4.187 10 N -0.564 5.564 11 Si 0.783 3.217 12 H -0.193 1.193 13 H -0.199 1.199 14 H -0.211 1.211 15 C 0.294 3.706 16 O -0.446 6.446 17 C -0.025 4.025 18 O -0.262 6.262 19 C 0.316 3.684 20 O -0.418 6.418 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.104 4.104 24 C -0.165 4.165 25 C -0.174 4.174 26 C -0.153 4.153 27 C -0.145 4.145 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.816 -12.619 -20.686 24.530 hybrid contribution 0.572 1.226 0.757 1.550 sum -3.244 -11.393 -19.929 23.184 Atomic orbital electron populations 1.81254 1.14417 1.10015 1.10856 1.29113 0.94932 0.91770 0.91441 1.19845 0.80187 1.00453 1.07556 1.21628 0.78720 0.96868 1.04448 1.47998 1.06895 1.63490 1.13779 1.18912 0.91716 0.93505 0.81944 1.21760 1.36525 0.94495 1.05188 0.92801 1.25702 0.95202 1.02748 0.95071 1.70017 1.39083 1.37540 1.09746 0.85513 0.77721 0.80182 0.78267 1.19311 1.19888 1.21069 1.20464 0.87698 0.77887 0.84596 1.90710 1.15978 1.54880 1.83040 1.22934 0.90618 1.03832 0.85131 1.86610 1.40826 1.75692 1.23095 1.24310 0.88950 0.72349 0.82813 1.90631 1.17661 1.51272 1.82230 1.22756 0.98676 1.00570 0.91006 1.22667 0.98048 0.97390 0.94538 1.22428 0.97653 0.96801 0.93514 1.22778 1.01025 0.95900 0.96786 1.22820 0.99250 0.99181 0.96183 1.22750 0.96318 1.00785 0.95461 1.22801 1.02569 0.91987 0.97145 0.84904 0.85432 0.88795 0.87956 0.93920 0.97356 0.92513 0.86780 0.85533 0.84561 0.89237 0.89301 0.91440 0.89311 0.90697 0.89959 0.89006 0.90720 0.89768 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.83 18.54 20.01 0.37 -13.46 16 2 C 0.24 5.43 15.43 89.44 1.38 6.81 16 3 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 4 C 0.11 2.59 5.17 86.38 0.45 3.04 16 5 N -0.59 -20.86 2.46 -826.15 -2.03 -22.89 16 6 C 0.26 12.23 5.16 85.63 0.44 12.67 16 7 C -0.54 -28.72 9.39 25.60 0.24 -28.48 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.01 0.66 5.46 84.66 0.46 1.12 16 10 N -0.92 -52.73 13.29 21.45 0.28 -52.44 16 11 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 C 0.51 18.69 7.75 87.66 0.68 19.37 16 16 O -0.57 -27.37 16.08 15.77 0.25 -27.12 16 17 C 0.05 1.39 4.50 71.24 0.32 1.71 16 18 O -0.35 -10.27 9.75 -45.03 -0.44 -10.71 16 19 C 0.47 11.77 7.49 71.24 0.53 12.30 16 20 O -0.53 -14.68 15.64 21.98 0.34 -14.33 16 21 C -0.11 -2.02 4.26 -10.90 -0.05 -2.06 16 22 C -0.09 -1.35 7.17 30.88 0.22 -1.13 16 23 C -0.10 -1.32 1.11 -52.26 -0.06 -1.38 16 24 C -0.13 -1.42 7.84 30.89 0.24 -1.18 16 25 C -0.14 -1.29 8.08 31.23 0.25 -1.04 16 26 C -0.12 -1.19 7.85 30.94 0.24 -0.95 16 27 C -0.11 -1.68 7.39 30.88 0.23 -1.45 16 28 H 0.13 1.76 7.22 -2.39 -0.02 1.74 16 29 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 31 H 0.10 1.95 6.44 -2.39 -0.02 1.94 16 32 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 33 H 0.01 0.46 7.42 -2.39 -0.02 0.44 16 34 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.11 2.69 7.39 -2.39 -0.02 2.68 16 36 H 0.13 2.56 7.18 -2.39 -0.02 2.54 16 37 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.57 7.43 -2.39 -0.02 1.55 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 46 H 0.08 1.39 8.09 -2.38 -0.02 1.37 16 47 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -74.52 401.55 7.54 -66.98 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.97 Total: 9.93 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 5.76 Total: 18.83 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -1.37 Total: -88.79 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: 0.16 Total: -52.17 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -74.52 7.54 -66.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830642160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.449 kcal (2) G-P(sol) polarization free energy of solvation -74.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.78 seconds