Wall clock time and date at job start Tue Mar 31 2020 22:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47088 * 280.05253 * 3 2 1 5 5 N 1.46498 * 109.47124 * 180.02562 * 4 3 2 6 6 C 1.46494 * 119.99927 * 270.00176 * 5 4 3 7 7 C 1.50703 * 109.47240 * 269.99823 * 6 5 4 8 8 H 1.08000 * 119.99630 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00156 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00276 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99916 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46963 * 60.00170 * 11 9 7 13 13 H 1.48500 * 109.47310 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47321 * 300.00382 * 11 9 7 15 15 C 1.34774 * 119.99860 * 89.99798 * 5 4 3 16 16 O 1.21290 * 119.99758 * 179.97438 * 15 5 4 17 17 C 1.50698 * 120.00317 * 0.02562 * 15 5 4 18 18 O 1.45200 * 109.47243 * 179.97438 * 17 15 5 19 19 C 1.34800 * 117.00215 * 180.02562 * 18 17 15 20 20 O 1.21541 * 119.99648 * 359.97438 * 19 18 17 21 21 C 1.46951 * 120.00147 * 179.97438 * 19 18 17 22 22 C 1.33082 * 119.99627 * 179.97438 * 21 19 18 23 23 C 1.50704 * 119.99573 * 180.02562 * 22 21 19 24 24 C 1.54892 * 110.59841 * 123.31922 * 23 22 21 25 25 C 1.54888 * 102.74611 * 156.67350 * 24 23 22 26 26 C 1.54265 * 104.19721 * 322.05788 * 25 24 23 27 27 C 1.53873 * 106.59997 * 23.61451 * 26 25 24 28 28 H 1.08999 * 109.47027 * 160.05440 * 3 2 1 29 29 H 1.08998 * 109.47282 * 40.05455 * 3 2 1 30 30 H 1.08999 * 109.47034 * 60.00191 * 4 3 2 31 31 H 1.09002 * 109.46932 * 299.99813 * 4 3 2 32 32 H 1.09007 * 109.47632 * 29.99721 * 6 5 4 33 33 H 1.09003 * 109.47381 * 150.00217 * 6 5 4 34 34 H 0.97000 * 119.99570 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47086 * 59.99985 * 17 15 5 36 36 H 1.09003 * 109.47025 * 300.00120 * 17 15 5 37 37 H 1.08001 * 119.99881 * 0.02562 * 21 19 18 38 38 H 1.08001 * 120.00492 * 0.02562 * 22 21 19 39 39 H 1.09002 * 110.43639 * 0.70213 * 23 22 21 40 40 H 1.08992 * 110.75663 * 274.99212 * 24 23 22 41 41 H 1.09000 * 110.75339 * 38.36236 * 24 23 22 42 42 H 1.09007 * 110.48520 * 203.37936 * 25 24 23 43 43 H 1.08996 * 110.48377 * 80.74349 * 25 24 23 44 44 H 1.08993 * 110.03585 * 264.31946 * 26 25 24 45 45 H 1.09006 * 110.07186 * 142.91875 * 26 25 24 46 46 H 1.09002 * 110.03017 * 240.71676 * 27 26 25 47 47 H 1.08992 * 110.03600 * 119.28231 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.2509 1.4204 5 7 4.5831 -0.2497 1.4205 6 6 5.3167 -1.4982 1.1989 7 6 5.5684 -2.1746 2.5219 8 1 5.2167 -1.7200 3.4363 9 6 6.2467 -3.3741 2.5649 10 7 6.6746 -3.9279 1.4513 11 14 6.5580 -4.2128 4.2047 12 1 5.2604 -4.5107 4.8625 13 1 7.3006 -5.4790 3.9800 14 1 7.3598 -3.3159 5.0752 15 6 5.2560 0.9002 1.6244 16 8 6.4689 0.9011 1.6250 17 6 4.5014 2.1845 1.8529 18 8 5.4440 3.2719 2.0462 19 6 4.9278 4.4978 2.2648 20 8 3.7227 4.6535 2.2926 21 6 5.8220 5.6458 2.4696 22 6 5.3122 6.8561 2.6849 23 6 6.2292 8.0335 2.8943 24 6 5.9287 9.1486 1.8620 25 6 6.4687 10.4191 2.5645 26 6 6.1051 10.2138 4.0495 27 6 5.9529 8.6971 4.2593 28 1 2.9709 0.9668 -0.3506 29 1 2.9717 -0.7858 -0.6613 30 1 2.7553 -1.2171 1.7710 31 1 2.7545 0.5356 2.0817 32 1 4.7282 -2.1570 0.5602 33 1 6.2690 -1.2793 0.7159 34 1 7.1515 -4.7721 1.4817 35 1 3.8751 2.0851 2.7394 36 1 3.8743 2.3964 0.9869 37 1 6.8928 5.5074 2.4445 38 1 4.2414 6.9945 2.7096 39 1 7.2713 7.7212 2.8259 40 1 6.4629 8.9660 0.9297 41 1 4.8565 9.2317 1.6843 42 1 5.9786 11.3098 2.1713 43 1 7.5494 10.4920 2.4428 44 1 5.1662 10.7184 4.2773 45 1 6.9006 10.6008 4.6864 46 1 4.9399 8.4655 4.5887 47 1 6.6750 8.3478 4.9972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830803790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:34 Heat of formation + Delta-G solvation = -93.015267 kcal Electronic energy + Delta-G solvation = -27416.927415 eV Core-core repulsion = 23371.866147 eV Total energy + Delta-G solvation = -4045.061268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.51738 -39.22121 -38.72498 -36.92752 -36.39206 -35.26971 -33.79215 -32.94517 -30.91380 -29.67662 -29.11830 -28.57069 -26.73040 -24.12141 -23.81776 -22.55755 -20.94939 -20.56125 -19.83384 -18.84221 -17.96642 -17.70957 -16.83987 -16.57309 -16.41845 -16.21205 -16.06055 -15.50187 -15.15571 -14.75299 -14.55620 -14.28802 -13.98562 -13.82252 -13.71430 -13.32025 -12.93286 -12.72692 -12.47998 -12.38298 -12.21838 -12.14495 -12.08142 -11.79788 -11.74021 -11.59058 -11.51343 -11.32657 -11.11543 -11.06003 -10.98365 -10.86073 -10.68413 -10.64321 -10.60185 -10.22784 -9.77758 -9.73201 -9.13894 -8.49970 -7.96400 -6.12014 -4.16988 0.89718 2.43322 2.71550 2.80609 2.82679 3.12349 3.29242 3.33955 3.37275 3.61345 4.07506 4.15661 4.22358 4.27780 4.39275 4.68462 4.73963 4.80789 4.89475 5.00548 5.01539 5.03200 5.08513 5.12572 5.14998 5.16734 5.21195 5.23829 5.25062 5.42580 5.43826 5.51488 5.65097 5.74713 5.76286 5.80090 5.90937 5.97677 6.01803 6.11460 6.31152 6.83435 7.26532 7.34155 7.56513 7.67821 7.83577 8.09603 8.12860 8.71985 8.88933 9.48578 10.96091 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.002239 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.403984 B =12504.410541 C =14263.405427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.509 3.491 16 O -0.509 6.509 17 C 0.046 3.954 18 O -0.324 6.324 19 C 0.495 3.505 20 O -0.518 6.518 21 C -0.188 4.188 22 C -0.047 4.047 23 C -0.074 4.074 24 C -0.116 4.116 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.118 4.118 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 24.583 0.539 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.102 4.102 3 C -0.093 4.093 4 C -0.014 4.014 5 N -0.325 5.325 6 C 0.128 3.872 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.726 3.274 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.294 3.706 16 O -0.383 6.383 17 C -0.031 4.031 18 O -0.239 6.239 19 C 0.341 3.659 20 O -0.409 6.409 21 C -0.207 4.207 22 C -0.065 4.065 23 C -0.093 4.093 24 C -0.154 4.154 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.155 4.155 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.159 0.841 38 H 0.147 0.853 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.594 24.395 0.469 24.663 hybrid contribution 0.385 -0.749 0.886 1.223 sum -3.209 23.646 1.355 23.901 Atomic orbital electron populations 1.81212 1.13011 1.09241 1.08524 1.29041 0.95049 0.92879 0.93211 1.19893 0.81520 1.06031 1.01812 1.21400 0.81934 1.04727 0.93311 1.48155 1.04995 1.09313 1.70078 1.19417 0.92668 0.77784 0.97316 1.21365 1.37012 1.05595 0.93082 0.92333 1.24913 0.95211 0.97060 0.96754 1.69907 1.38046 1.18733 1.26445 0.86557 0.78419 0.78662 0.83793 1.20228 1.21176 1.20128 1.19747 0.88184 0.83970 0.78736 1.90744 1.13284 1.85533 1.48750 1.22976 0.91285 0.85080 1.03774 1.86669 1.39558 1.16295 1.81328 1.21621 0.87587 0.83615 0.73076 1.90846 1.16372 1.85769 1.47934 1.21973 1.00293 0.90349 1.08114 1.23844 1.00932 0.92730 0.89011 1.21323 0.98882 0.92927 0.96147 1.22553 1.01704 0.93458 0.97680 1.22373 1.01072 0.97755 0.95104 1.22152 1.01646 0.95848 0.96675 1.22186 1.02463 0.94848 0.96025 0.87647 0.86205 0.88186 0.90637 0.94302 0.93335 0.92546 0.88487 0.88697 0.84068 0.85307 0.89272 0.90975 0.90909 0.91458 0.91413 0.91702 0.91686 0.91228 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.64 18.54 42.15 0.78 -5.86 16 2 C 0.22 2.66 15.43 -20.76 -0.32 2.34 16 3 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 4 C 0.11 1.48 5.17 -4.04 -0.02 1.46 16 5 N -0.59 -10.72 2.46 -175.06 -0.43 -11.15 16 6 C 0.25 5.72 5.16 -5.19 -0.03 5.70 16 7 C -0.53 -14.02 9.39 -34.44 -0.32 -14.35 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 11 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 15 C 0.51 9.58 7.75 -10.99 -0.09 9.50 16 16 O -0.51 -12.08 16.08 -14.11 -0.23 -12.31 16 17 C 0.05 0.68 4.51 36.00 0.16 0.84 16 18 O -0.32 -5.10 9.77 -47.45 -0.46 -5.57 16 19 C 0.49 6.78 7.91 34.26 0.27 7.05 16 20 O -0.52 -7.85 16.01 -19.30 -0.31 -8.16 16 21 C -0.19 -1.93 9.77 -37.85 -0.37 -2.30 16 22 C -0.05 -0.39 8.27 -36.10 -0.30 -0.69 16 23 C -0.07 -0.47 3.18 -90.11 -0.29 -0.76 16 24 C -0.12 -0.66 6.32 -24.74 -0.16 -0.81 16 25 C -0.13 -0.62 6.83 -25.07 -0.17 -0.79 16 26 C -0.13 -0.64 6.80 -25.61 -0.17 -0.81 16 27 C -0.12 -0.69 6.36 -25.61 -0.16 -0.86 16 28 H 0.11 0.91 7.22 -51.93 -0.38 0.53 16 29 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 32 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.10 1.28 7.40 -51.93 -0.38 0.90 16 36 H 0.10 1.13 7.18 -51.93 -0.37 0.75 16 37 H 0.14 1.26 7.90 -52.49 -0.41 0.84 16 38 H 0.13 1.13 7.49 -52.49 -0.39 0.74 16 39 H 0.09 0.53 7.87 -51.93 -0.41 0.12 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.41 8.05 -51.93 -0.42 0.00 16 42 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.43 7.83 -51.93 -0.41 0.02 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -33.98 405.39 -8.30 -42.28 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -7.24 Total: -3.38 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -2.24 Total: 6.42 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 1.09 Total: -41.45 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -1.00 Total: -26.03 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.98 -8.30 -42.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830803790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.738 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds