Wall clock time and date at job start Tue Mar 31 2020 22:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47088 * 280.05253 * 3 2 1 5 5 N 1.46498 * 109.47124 * 180.02562 * 4 3 2 6 6 C 1.46494 * 119.99927 * 270.00176 * 5 4 3 7 7 C 1.50703 * 109.47240 * 269.99823 * 6 5 4 8 8 H 1.08000 * 119.99630 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00156 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00276 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99916 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46963 * 60.00170 * 11 9 7 13 13 H 1.48500 * 109.47310 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47321 * 300.00382 * 11 9 7 15 15 C 1.34774 * 119.99860 * 89.99798 * 5 4 3 16 16 O 1.21290 * 119.99758 * 179.97438 * 15 5 4 17 17 C 1.50698 * 120.00317 * 0.02562 * 15 5 4 18 18 O 1.45200 * 109.47243 * 179.97438 * 17 15 5 19 19 C 1.34800 * 117.00215 * 180.02562 * 18 17 15 20 20 O 1.21541 * 119.99648 * 359.97438 * 19 18 17 21 21 C 1.46951 * 120.00147 * 179.97438 * 19 18 17 22 22 C 1.33082 * 119.99627 * 179.97438 * 21 19 18 23 23 C 1.50704 * 119.99573 * 180.02562 * 22 21 19 24 24 C 1.54892 * 110.59841 * 123.31922 * 23 22 21 25 25 C 1.54888 * 102.74611 * 156.67350 * 24 23 22 26 26 C 1.54265 * 104.19721 * 322.05788 * 25 24 23 27 27 C 1.53873 * 106.59997 * 23.61451 * 26 25 24 28 28 H 1.08999 * 109.47027 * 160.05440 * 3 2 1 29 29 H 1.08998 * 109.47282 * 40.05455 * 3 2 1 30 30 H 1.08999 * 109.47034 * 60.00191 * 4 3 2 31 31 H 1.09002 * 109.46932 * 299.99813 * 4 3 2 32 32 H 1.09007 * 109.47632 * 29.99721 * 6 5 4 33 33 H 1.09003 * 109.47381 * 150.00217 * 6 5 4 34 34 H 0.97000 * 119.99570 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47086 * 59.99985 * 17 15 5 36 36 H 1.09003 * 109.47025 * 300.00120 * 17 15 5 37 37 H 1.08001 * 119.99881 * 0.02562 * 21 19 18 38 38 H 1.08001 * 120.00492 * 0.02562 * 22 21 19 39 39 H 1.09002 * 110.43639 * 0.70213 * 23 22 21 40 40 H 1.08992 * 110.75663 * 274.99212 * 24 23 22 41 41 H 1.09000 * 110.75339 * 38.36236 * 24 23 22 42 42 H 1.09007 * 110.48520 * 203.37936 * 25 24 23 43 43 H 1.08996 * 110.48377 * 80.74349 * 25 24 23 44 44 H 1.08993 * 110.03585 * 264.31946 * 26 25 24 45 45 H 1.09006 * 110.07186 * 142.91875 * 26 25 24 46 46 H 1.09002 * 110.03017 * 240.71676 * 27 26 25 47 47 H 1.08992 * 110.03600 * 119.28231 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.2509 1.4204 5 7 4.5831 -0.2497 1.4205 6 6 5.3167 -1.4982 1.1989 7 6 5.5684 -2.1746 2.5219 8 1 5.2167 -1.7200 3.4363 9 6 6.2467 -3.3741 2.5649 10 7 6.6746 -3.9279 1.4513 11 14 6.5580 -4.2128 4.2047 12 1 5.2604 -4.5107 4.8625 13 1 7.3006 -5.4790 3.9800 14 1 7.3598 -3.3159 5.0752 15 6 5.2560 0.9002 1.6244 16 8 6.4689 0.9011 1.6250 17 6 4.5014 2.1845 1.8529 18 8 5.4440 3.2719 2.0462 19 6 4.9278 4.4978 2.2648 20 8 3.7227 4.6535 2.2926 21 6 5.8220 5.6458 2.4696 22 6 5.3122 6.8561 2.6849 23 6 6.2292 8.0335 2.8943 24 6 5.9287 9.1486 1.8620 25 6 6.4687 10.4191 2.5645 26 6 6.1051 10.2138 4.0495 27 6 5.9529 8.6971 4.2593 28 1 2.9709 0.9668 -0.3506 29 1 2.9717 -0.7858 -0.6613 30 1 2.7553 -1.2171 1.7710 31 1 2.7545 0.5356 2.0817 32 1 4.7282 -2.1570 0.5602 33 1 6.2690 -1.2793 0.7159 34 1 7.1515 -4.7721 1.4817 35 1 3.8751 2.0851 2.7394 36 1 3.8743 2.3964 0.9869 37 1 6.8928 5.5074 2.4445 38 1 4.2414 6.9945 2.7096 39 1 7.2713 7.7212 2.8259 40 1 6.4629 8.9660 0.9297 41 1 4.8565 9.2317 1.6843 42 1 5.9786 11.3098 2.1713 43 1 7.5494 10.4920 2.4428 44 1 5.1662 10.7184 4.2773 45 1 6.9006 10.6008 4.6864 46 1 4.9399 8.4655 4.5887 47 1 6.6750 8.3478 4.9972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830803790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:22 Heat of formation + Delta-G solvation = -110.548905 kcal Electronic energy + Delta-G solvation = -27417.687731 eV Core-core repulsion = 23371.866147 eV Total energy + Delta-G solvation = -4045.821583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.60 seconds Orbital eigenvalues (eV) -41.65816 -40.58868 -39.27797 -38.07190 -37.52415 -36.71168 -34.88393 -34.49565 -32.23481 -30.92703 -29.54378 -29.43101 -28.29580 -25.38054 -25.03954 -23.97102 -21.46472 -21.19958 -20.57318 -20.22431 -19.02049 -18.86005 -18.38320 -17.93191 -17.63747 -17.48332 -16.92287 -16.53082 -16.19905 -15.90450 -15.80678 -15.67033 -14.88355 -14.70245 -14.50910 -14.38740 -14.24902 -13.86684 -13.83688 -13.60417 -13.57223 -13.20074 -12.97970 -12.95309 -12.74184 -12.67274 -12.52012 -12.39471 -12.18339 -12.05186 -12.02635 -11.92321 -11.75649 -11.68762 -11.65069 -11.53171 -11.25856 -10.70495 -10.57713 -10.44256 -9.58408 -8.18034 -6.29895 0.06075 1.30847 1.41648 1.44262 1.50900 1.57732 1.79033 1.82195 1.90099 2.33401 2.46165 3.04180 3.14471 3.52445 3.56101 3.72888 3.78011 3.85613 3.99265 4.00778 4.09036 4.11179 4.14292 4.37248 4.52236 4.57735 4.59715 4.65254 4.69169 4.79302 4.85287 4.98043 5.01173 5.02498 5.13510 5.15885 5.23016 5.27470 5.32812 5.33905 5.39778 5.51623 5.53116 5.56369 5.83452 6.11358 6.53334 6.59173 6.67870 6.78655 7.25107 7.42309 8.88709 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.002239 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.403984 B =12504.410541 C =14263.405427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.245 3.755 3 C -0.040 4.040 4 C 0.108 3.892 5 N -0.589 5.589 6 C 0.260 3.740 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.012 3.988 10 N -0.924 5.924 11 Si 0.957 3.043 12 H -0.264 1.264 13 H -0.282 1.282 14 H -0.280 1.280 15 C 0.506 3.494 16 O -0.569 6.569 17 C 0.054 3.946 18 O -0.346 6.346 19 C 0.495 3.505 20 O -0.537 6.537 21 C -0.211 4.211 22 C -0.018 4.018 23 C -0.075 4.075 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.119 4.119 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.043 0.957 33 H 0.008 0.992 34 H 0.266 0.734 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 26.315 1.176 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.072 4.072 3 C -0.081 4.081 4 C -0.017 4.017 5 N -0.321 5.321 6 C 0.140 3.860 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.188 4.188 10 N -0.563 5.563 11 Si 0.783 3.217 12 H -0.188 1.188 13 H -0.207 1.207 14 H -0.205 1.205 15 C 0.293 3.707 16 O -0.447 6.447 17 C -0.023 4.023 18 O -0.261 6.261 19 C 0.343 3.657 20 O -0.430 6.430 21 C -0.229 4.229 22 C -0.037 4.037 23 C -0.093 4.093 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.163 4.163 27 C -0.156 4.156 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.144 0.856 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.478 26.142 1.108 26.546 hybrid contribution 0.638 -1.203 0.689 1.526 sum -3.841 24.939 1.797 25.297 Atomic orbital electron populations 1.81255 1.14417 1.10983 1.09924 1.29116 0.94931 0.91355 0.91825 1.19847 0.80176 1.07920 1.00108 1.21636 0.78668 1.05662 0.95716 1.47990 1.06925 1.07711 1.69477 1.18910 0.91687 0.79709 0.95738 1.21711 1.36634 1.05756 0.94092 0.92755 1.25709 0.95194 0.97955 0.99895 1.70009 1.38897 1.19152 1.28260 0.85619 0.78670 0.77546 0.79888 1.18824 1.20732 1.20545 1.20463 0.87696 0.85278 0.77223 1.90714 1.16028 1.86565 1.51407 1.22936 0.90517 0.82819 1.06034 1.86669 1.40482 1.17197 1.81793 1.22125 0.87838 0.83409 0.72287 1.90826 1.17111 1.85827 1.49221 1.22001 1.00422 0.89761 1.10754 1.24033 1.01148 0.92652 0.85869 1.21402 0.98760 0.92314 0.96853 1.22572 1.01818 0.93406 0.97608 1.22378 1.01362 0.97580 0.94827 1.22160 1.02038 0.95151 0.96930 1.22205 1.02359 0.95460 0.95598 0.84871 0.85440 0.88768 0.87897 0.93882 0.97390 0.92513 0.86629 0.85343 0.83027 0.85587 0.88610 0.90680 0.90951 0.90806 0.91050 0.91434 0.91163 0.91530 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.90 18.54 20.01 0.37 -13.53 16 2 C 0.25 5.47 15.43 89.44 1.38 6.85 16 3 C -0.04 -0.72 6.03 28.79 0.17 -0.55 16 4 C 0.11 2.61 5.17 86.38 0.45 3.05 16 5 N -0.59 -21.00 2.46 -826.14 -2.03 -23.03 16 6 C 0.26 12.31 5.16 85.64 0.44 12.76 16 7 C -0.54 -28.97 9.39 25.60 0.24 -28.73 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.01 0.65 5.46 84.65 0.46 1.12 16 10 N -0.92 -52.90 13.29 21.45 0.28 -52.62 16 11 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 15 C 0.51 18.92 7.75 87.66 0.68 19.60 16 16 O -0.57 -27.79 16.08 15.74 0.25 -27.54 16 17 C 0.05 1.48 4.51 71.24 0.32 1.80 16 18 O -0.35 -10.63 9.77 -50.72 -0.50 -11.13 16 19 C 0.50 13.03 7.91 70.10 0.55 13.58 16 20 O -0.54 -15.43 16.01 19.70 0.32 -15.12 16 21 C -0.21 -4.09 9.77 23.40 0.23 -3.86 16 22 C -0.02 -0.28 8.27 24.53 0.20 -0.08 16 23 C -0.07 -0.82 3.18 -10.46 -0.03 -0.85 16 24 C -0.12 -1.09 6.32 31.89 0.20 -0.89 16 25 C -0.12 -0.97 6.83 31.67 0.22 -0.75 16 26 C -0.13 -1.03 6.80 31.32 0.21 -0.82 16 27 C -0.12 -1.19 6.36 31.32 0.20 -0.99 16 28 H 0.13 1.79 7.22 -2.39 -0.02 1.77 16 29 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.09 2.44 8.07 -2.39 -0.02 2.43 16 31 H 0.10 1.97 6.44 -2.39 -0.02 1.96 16 32 H 0.04 1.99 8.07 -2.38 -0.02 1.97 16 33 H 0.01 0.44 7.42 -2.39 -0.02 0.43 16 34 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.12 2.76 7.40 -2.39 -0.02 2.75 16 36 H 0.13 2.64 7.18 -2.39 -0.02 2.62 16 37 H 0.15 2.57 7.90 -2.91 -0.02 2.55 16 38 H 0.13 2.02 7.49 -2.91 -0.02 2.00 16 39 H 0.10 0.96 7.87 -2.39 -0.02 0.94 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.69 8.05 -2.39 -0.02 0.67 16 42 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 46 H 0.07 0.71 7.83 -2.39 -0.02 0.69 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -75.52 405.39 7.62 -67.90 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.97 Total: 8.49 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 5.93 Total: 21.24 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -1.37 Total: -89.18 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: 0.07 Total: -53.79 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -75.52 7.62 -67.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830803790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.654 kcal (2) G-P(sol) polarization free energy of solvation -75.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.60 seconds