Wall clock time and date at job start Tue Mar 31 2020 20:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99907 * 2 1 4 4 H 1.09006 * 109.47007 * 31.15023 * 3 2 1 5 5 C 1.52997 * 109.47286 * 151.15183 * 3 2 1 6 6 O 1.45200 * 109.47034 * 295.00080 * 5 3 2 7 7 C 1.34707 * 117.00295 * 179.97438 * 6 5 3 8 8 O 1.21462 * 119.99562 * 359.97438 * 7 6 5 9 9 C 1.47772 * 119.99982 * 179.97438 * 7 6 5 10 10 C 1.39955 * 120.03179 * 359.72442 * 9 7 6 11 11 C 1.38317 * 120.35567 * 179.78514 * 10 9 7 12 12 C 1.37772 * 120.41403 * 0.47124 * 11 10 9 13 13 C 1.40755 * 120.04856 * 359.78474 * 12 11 10 14 14 C 1.41434 * 120.17170 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99952 * 334.17154 * 14 13 12 16 16 C 1.39935 * 119.99981 * 154.18252 * 14 13 12 17 17 N 1.30832 * 119.99866 * 345.20194 * 16 14 13 18 18 Si 1.86803 * 120.00239 * 165.20909 * 16 14 13 19 19 H 1.48497 * 109.47016 * 59.99255 * 18 16 14 20 20 H 1.48493 * 109.47118 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46867 * 299.99566 * 18 16 14 22 22 C 1.39047 * 120.02565 * 180.02562 * 9 7 6 23 23 C 1.53003 * 109.47231 * 271.15501 * 3 2 1 24 24 C 1.53184 * 109.53828 * 296.62016 * 23 3 2 25 25 C 1.53092 * 109.16181 * 183.15195 * 24 23 3 26 26 O 1.42909 * 109.41411 * 57.60736 * 25 24 23 27 27 C 1.42895 * 114.09969 * 298.84483 * 26 25 24 28 28 C 1.53099 * 109.41957 * 61.15355 * 27 26 25 29 29 H 1.08998 * 109.47209 * 304.87052 * 1 2 3 30 30 H 1.08993 * 109.47579 * 64.87545 * 1 2 3 31 31 H 1.09002 * 109.46653 * 184.87469 * 1 2 3 32 32 H 1.08993 * 109.47094 * 54.99956 * 5 3 2 33 33 H 1.09001 * 109.47191 * 175.00376 * 5 3 2 34 34 H 1.08003 * 119.82505 * 359.97438 * 10 9 7 35 35 H 1.07994 * 119.80030 * 180.23393 * 11 10 9 36 36 H 1.07993 * 119.97331 * 179.76342 * 12 11 10 37 37 H 0.97000 * 119.99893 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.20956 * 359.95491 * 22 9 7 39 39 H 1.08994 * 109.61845 * 56.83853 * 23 3 2 40 40 H 1.08995 * 109.51934 * 63.24698 * 24 23 3 41 41 H 1.09003 * 109.57482 * 303.09014 * 24 23 3 42 42 H 1.08998 * 109.48099 * 177.59122 * 25 24 23 43 43 H 1.08996 * 109.48118 * 297.63247 * 25 24 23 44 44 H 1.09004 * 109.48475 * 301.17635 * 27 26 25 45 45 H 1.09000 * 109.48049 * 181.13847 * 27 26 25 46 46 H 1.09001 * 109.52606 * 182.48497 * 28 27 26 47 47 H 1.09004 * 109.51604 * 62.29911 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3545 1.9951 0.5316 5 6 3.3719 1.2575 0.6960 6 8 3.1882 0.9188 2.0959 7 6 4.2976 0.8347 2.8555 8 8 5.3885 1.0383 2.3617 9 6 4.1873 0.4948 4.2893 10 6 2.9301 0.2657 4.8602 11 6 2.8194 -0.0572 6.2006 12 6 3.9439 -0.1477 6.9914 13 6 5.2164 0.0844 6.4363 14 6 6.3726 -0.0083 7.2456 15 1 6.3015 0.1594 8.3101 16 6 7.6088 -0.3171 6.6670 17 7 7.6600 -0.7999 5.4521 18 14 9.1858 -0.0401 7.6292 19 1 9.1574 -0.8541 8.8709 20 1 10.3492 -0.4439 6.7995 21 1 9.3041 1.3975 7.9823 22 6 5.3319 0.4083 5.0740 23 6 2.1911 1.7832 -1.4422 24 6 3.1785 0.8630 -2.1667 25 6 3.4135 1.3939 -3.5833 26 8 3.8995 2.7360 -3.5130 27 6 2.9977 3.6512 -2.8878 28 6 2.7458 3.2110 -1.4432 29 1 -0.3633 0.5875 0.8431 30 1 -0.3634 0.4363 -0.9303 31 1 -0.3633 -1.0240 0.0873 32 1 3.9975 0.5033 0.2187 33 1 3.8542 2.2319 0.6182 34 1 2.0418 0.3386 4.2502 35 1 1.8452 -0.2358 6.6309 36 1 3.8490 -0.3966 8.0379 37 1 8.5168 -1.0143 5.0511 38 1 6.3039 0.5883 4.6388 39 1 1.2306 1.7648 -1.9570 40 1 2.7660 -0.1445 -2.2191 41 1 4.1236 0.8420 -1.6241 42 1 4.1480 0.7673 -4.0892 43 1 2.4757 1.3757 -4.1385 44 1 2.0544 3.6624 -3.4339 45 1 3.4326 4.6506 -2.8926 46 1 2.0241 3.8825 -0.9783 47 1 3.6821 3.2384 -0.8857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835550419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:21 Heat of formation + Delta-G solvation = -171.073286 kcal Electronic energy + Delta-G solvation = -28882.421447 eV Core-core repulsion = 24801.682579 eV Total energy + Delta-G solvation = -4080.738869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 4.40 seconds Orbital eigenvalues (eV) -40.31075 -39.49802 -38.05784 -37.29443 -35.65543 -34.46738 -33.73180 -31.37964 -30.54686 -29.59849 -29.42411 -26.51700 -25.73671 -25.23024 -23.85727 -22.96667 -22.27841 -20.98142 -19.79728 -19.68528 -17.84966 -17.05219 -16.78934 -16.53592 -16.12599 -15.99315 -15.46753 -15.35814 -15.12468 -14.85518 -14.80076 -14.47602 -14.21198 -13.87901 -13.37075 -13.22678 -13.00560 -12.71697 -12.63394 -12.55131 -12.29680 -11.82210 -11.71577 -11.61715 -11.53200 -11.24856 -11.16871 -11.10861 -10.76942 -10.71913 -10.53051 -10.42108 -10.19478 -10.14359 -10.05949 -9.73691 -9.59934 -9.37358 -9.25399 -7.73972 -7.53810 -6.79434 -4.44349 1.99436 2.79346 3.06949 3.08720 3.14469 3.16531 3.53794 3.62433 3.64156 3.91011 4.29767 4.47475 4.50749 4.59928 4.73618 4.90026 4.93074 4.95648 5.08420 5.16284 5.26015 5.27527 5.35764 5.38239 5.42220 5.45741 5.54232 5.57167 5.59210 5.62619 5.76777 5.86960 5.92099 6.08653 6.13137 6.40432 6.63560 6.93181 6.93976 6.95520 7.00198 7.03411 7.18379 7.31537 7.68443 7.75451 7.91485 8.10860 8.44565 8.57805 8.77741 8.79395 10.15183 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.002679 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.508414 B =10449.035749 C =11690.240740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.099 3.901 4 H 0.073 0.927 5 C 0.066 3.934 6 O -0.350 6.350 7 C 0.512 3.488 8 O -0.518 6.518 9 C -0.115 4.115 10 C -0.191 4.191 11 C -0.105 4.105 12 C -0.200 4.200 13 C 0.095 3.905 14 C -0.460 4.460 15 H 0.081 0.919 16 C 0.072 3.928 17 N -0.790 5.790 18 Si 0.913 3.087 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.087 4.087 23 C -0.106 4.106 24 C -0.154 4.154 25 C 0.061 3.939 26 O -0.383 6.383 27 C 0.064 3.936 28 C -0.159 4.159 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.285 0.715 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 5.219 -14.792 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C 0.041 3.959 4 H 0.091 0.909 5 C -0.009 4.009 6 O -0.268 6.268 7 C 0.359 3.641 8 O -0.408 6.408 9 C -0.117 4.117 10 C -0.210 4.210 11 C -0.124 4.124 12 C -0.220 4.220 13 C 0.092 3.908 14 C -0.490 4.490 15 H 0.100 0.900 16 C -0.147 4.147 17 N -0.415 5.415 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.106 4.106 23 C -0.124 4.124 24 C -0.191 4.191 25 C -0.015 4.015 26 O -0.302 6.302 27 C -0.013 4.013 28 C -0.197 4.197 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.155 0.845 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.809 5.068 -15.228 19.349 hybrid contribution 0.251 0.123 0.351 0.449 sum -10.558 5.191 -14.877 18.967 Atomic orbital electron populations 1.22791 0.81154 1.02906 0.99660 1.87991 1.19557 1.26605 1.94808 1.22103 0.94163 0.85800 0.93850 0.90862 1.23135 0.96406 1.01791 0.79529 1.86601 1.37113 1.81689 1.21383 1.21883 0.81304 0.72879 0.88056 1.90761 1.28359 1.47285 1.74391 1.18841 0.95860 1.09303 0.87664 1.20563 0.95011 1.10218 0.95252 1.20509 0.97082 1.01045 0.93738 1.21202 0.92889 1.08992 0.98946 1.17546 0.92435 0.89169 0.91610 1.19531 0.91434 1.42293 0.95702 0.90041 1.25963 1.01291 0.92361 0.95055 1.69756 1.28479 1.29191 1.14063 0.86282 0.79880 0.80014 0.80083 1.18968 1.20226 1.18757 1.21708 0.96693 0.98180 0.94037 1.21637 0.99841 0.95208 0.95756 1.22283 1.00360 0.99967 0.96520 1.22601 0.99533 0.83363 0.96020 1.87953 1.44164 1.18429 1.79627 1.22537 0.93710 0.93380 0.91690 1.22379 1.02724 0.96037 0.98564 0.93683 0.94505 0.89585 0.90447 0.90051 0.87940 0.88569 0.88346 0.90385 0.84493 0.90184 0.89838 0.90346 0.88735 0.93382 0.93304 0.88706 0.90425 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.87 101.05 1.10 1.40 16 2 O -0.37 -4.86 9.86 -38.80 -0.38 -5.24 16 3 C 0.10 1.19 2.19 -26.73 -0.06 1.13 16 4 H 0.07 0.81 7.73 -51.93 -0.40 0.41 16 5 C 0.07 1.02 4.37 37.16 0.16 1.18 16 6 O -0.35 -6.82 9.43 -43.29 -0.41 -7.22 16 7 C 0.51 11.77 7.90 34.63 0.27 12.05 16 8 O -0.52 -12.90 16.12 -19.24 -0.31 -13.21 16 9 C -0.12 -2.83 5.87 -105.06 -0.62 -3.44 16 10 C -0.19 -4.25 9.62 -38.91 -0.37 -4.63 16 11 C -0.11 -2.29 10.01 -39.72 -0.40 -2.69 16 12 C -0.20 -4.75 9.78 -38.80 -0.38 -5.13 16 13 C 0.09 2.50 5.57 -106.87 -0.59 1.91 16 14 C -0.46 -12.01 9.06 -37.73 -0.34 -12.35 16 15 H 0.08 2.00 7.89 -52.49 -0.41 1.59 16 16 C 0.07 1.80 5.19 -17.34 -0.09 1.71 16 17 N -0.79 -20.89 10.86 55.55 0.60 -20.29 16 18 Si 0.91 18.72 29.58 -169.99 -5.03 13.69 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.09 -2.32 8.22 -38.43 -0.32 -2.64 16 23 C -0.11 -1.00 2.25 -90.43 -0.20 -1.21 16 24 C -0.15 -1.55 4.92 -26.59 -0.13 -1.68 16 25 C 0.06 0.56 6.84 37.20 0.25 0.81 16 26 O -0.38 -4.18 10.77 -35.23 -0.38 -4.56 16 27 C 0.06 0.54 6.84 37.21 0.25 0.79 16 28 C -0.16 -1.41 5.21 -26.59 -0.14 -1.55 16 29 H 0.04 0.41 7.97 -51.93 -0.41 0.00 16 30 H 0.04 0.28 7.82 -51.93 -0.41 -0.13 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.26 6.59 -51.93 -0.34 0.92 16 33 H 0.08 1.19 6.21 -51.93 -0.32 0.87 16 34 H 0.10 2.07 7.59 -52.48 -0.40 1.67 16 35 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 38 H 0.14 3.92 5.72 -52.49 -0.30 3.62 16 39 H 0.08 0.66 7.82 -51.93 -0.41 0.25 16 40 H 0.08 0.84 7.88 -51.93 -0.41 0.43 16 41 H 0.08 0.93 6.33 -51.93 -0.33 0.60 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.84 6.27 -51.93 -0.33 0.51 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -30.36 381.75 -8.74 -39.10 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.98 Total: 6.32 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -1.60 Total: -14.35 kcal Atomic # 7 Polarization: -20.89 SS G_CDS: 0.60 Total: -20.29 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.48 Total: -30.23 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.36 -8.74 -39.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835550419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.978 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.41 seconds