Wall clock time and date at job start Tue Mar 31 2020 20:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99907 * 2 1 4 4 H 1.09006 * 109.47007 * 31.15023 * 3 2 1 5 5 C 1.52997 * 109.47286 * 151.15183 * 3 2 1 6 6 O 1.45200 * 109.47034 * 295.00080 * 5 3 2 7 7 C 1.34707 * 117.00295 * 179.97438 * 6 5 3 8 8 O 1.21462 * 119.99562 * 359.97438 * 7 6 5 9 9 C 1.47772 * 119.99982 * 179.97438 * 7 6 5 10 10 C 1.39955 * 120.03179 * 359.72442 * 9 7 6 11 11 C 1.38317 * 120.35567 * 179.78514 * 10 9 7 12 12 C 1.37772 * 120.41403 * 0.47124 * 11 10 9 13 13 C 1.40755 * 120.04856 * 359.78474 * 12 11 10 14 14 C 1.41434 * 120.17170 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99952 * 334.17154 * 14 13 12 16 16 C 1.39935 * 119.99981 * 154.18252 * 14 13 12 17 17 N 1.30832 * 119.99866 * 345.20194 * 16 14 13 18 18 Si 1.86803 * 120.00239 * 165.20909 * 16 14 13 19 19 H 1.48497 * 109.47016 * 59.99255 * 18 16 14 20 20 H 1.48493 * 109.47118 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46867 * 299.99566 * 18 16 14 22 22 C 1.39047 * 120.02565 * 180.02562 * 9 7 6 23 23 C 1.53003 * 109.47231 * 271.15501 * 3 2 1 24 24 C 1.53184 * 109.53828 * 296.62016 * 23 3 2 25 25 C 1.53092 * 109.16181 * 183.15195 * 24 23 3 26 26 O 1.42909 * 109.41411 * 57.60736 * 25 24 23 27 27 C 1.42895 * 114.09969 * 298.84483 * 26 25 24 28 28 C 1.53099 * 109.41957 * 61.15355 * 27 26 25 29 29 H 1.08998 * 109.47209 * 304.87052 * 1 2 3 30 30 H 1.08993 * 109.47579 * 64.87545 * 1 2 3 31 31 H 1.09002 * 109.46653 * 184.87469 * 1 2 3 32 32 H 1.08993 * 109.47094 * 54.99956 * 5 3 2 33 33 H 1.09001 * 109.47191 * 175.00376 * 5 3 2 34 34 H 1.08003 * 119.82505 * 359.97438 * 10 9 7 35 35 H 1.07994 * 119.80030 * 180.23393 * 11 10 9 36 36 H 1.07993 * 119.97331 * 179.76342 * 12 11 10 37 37 H 0.97000 * 119.99893 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.20956 * 359.95491 * 22 9 7 39 39 H 1.08994 * 109.61845 * 56.83853 * 23 3 2 40 40 H 1.08995 * 109.51934 * 63.24698 * 24 23 3 41 41 H 1.09003 * 109.57482 * 303.09014 * 24 23 3 42 42 H 1.08998 * 109.48099 * 177.59122 * 25 24 23 43 43 H 1.08996 * 109.48118 * 297.63247 * 25 24 23 44 44 H 1.09004 * 109.48475 * 301.17635 * 27 26 25 45 45 H 1.09000 * 109.48049 * 181.13847 * 27 26 25 46 46 H 1.09001 * 109.52606 * 182.48497 * 28 27 26 47 47 H 1.09004 * 109.51604 * 62.29911 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3545 1.9951 0.5316 5 6 3.3719 1.2575 0.6960 6 8 3.1882 0.9188 2.0959 7 6 4.2976 0.8347 2.8555 8 8 5.3885 1.0383 2.3617 9 6 4.1873 0.4948 4.2893 10 6 2.9301 0.2657 4.8602 11 6 2.8194 -0.0572 6.2006 12 6 3.9439 -0.1477 6.9914 13 6 5.2164 0.0844 6.4363 14 6 6.3726 -0.0083 7.2456 15 1 6.3015 0.1594 8.3101 16 6 7.6088 -0.3171 6.6670 17 7 7.6600 -0.7999 5.4521 18 14 9.1858 -0.0401 7.6292 19 1 9.1574 -0.8541 8.8709 20 1 10.3492 -0.4439 6.7995 21 1 9.3041 1.3975 7.9823 22 6 5.3319 0.4083 5.0740 23 6 2.1911 1.7832 -1.4422 24 6 3.1785 0.8630 -2.1667 25 6 3.4135 1.3939 -3.5833 26 8 3.8995 2.7360 -3.5130 27 6 2.9977 3.6512 -2.8878 28 6 2.7458 3.2110 -1.4432 29 1 -0.3633 0.5875 0.8431 30 1 -0.3634 0.4363 -0.9303 31 1 -0.3633 -1.0240 0.0873 32 1 3.9975 0.5033 0.2187 33 1 3.8542 2.2319 0.6182 34 1 2.0418 0.3386 4.2502 35 1 1.8452 -0.2358 6.6309 36 1 3.8490 -0.3966 8.0379 37 1 8.5168 -1.0143 5.0511 38 1 6.3039 0.5883 4.6388 39 1 1.2306 1.7648 -1.9570 40 1 2.7660 -0.1445 -2.2191 41 1 4.1236 0.8420 -1.6241 42 1 4.1480 0.7673 -4.0892 43 1 2.4757 1.3757 -4.1385 44 1 2.0544 3.6624 -3.4339 45 1 3.4326 4.6506 -2.8926 46 1 2.0241 3.8825 -0.9783 47 1 3.6821 3.2384 -0.8857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835550419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:20 Heat of formation + Delta-G solvation = -187.723862 kcal Electronic energy + Delta-G solvation = -28883.143470 eV Core-core repulsion = 24801.682579 eV Total energy + Delta-G solvation = -4081.460892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.62554 -40.72929 -39.26015 -38.82765 -37.31883 -35.62764 -35.31926 -32.32733 -32.08140 -31.38254 -30.65147 -27.45315 -27.21876 -26.58814 -24.62481 -24.58083 -23.16336 -22.85656 -21.55914 -20.54184 -19.66476 -18.35078 -18.08180 -17.84849 -17.27034 -16.95969 -16.92034 -16.78356 -16.51347 -16.03777 -15.92274 -15.61255 -15.21081 -14.95748 -14.90402 -14.74814 -14.37647 -14.33157 -13.90483 -13.57246 -13.48493 -13.29153 -12.98490 -12.82621 -12.72248 -12.58873 -12.47674 -12.35857 -12.23841 -12.15739 -12.01461 -11.66557 -11.57193 -11.40487 -11.32867 -11.19201 -11.10731 -10.83855 -10.30524 -9.62962 -9.44219 -8.66540 -6.41726 0.11215 0.96239 1.37354 1.46673 1.50932 1.61792 1.78609 2.19065 2.65744 2.72992 2.96875 3.44688 3.59990 3.61687 3.71046 3.90286 3.94551 4.02829 4.11125 4.17618 4.24146 4.35818 4.40478 4.47154 4.52416 4.60826 4.61342 4.63934 4.69493 4.75000 4.78919 4.83825 4.87653 4.89819 5.03782 5.08857 5.11842 5.13481 5.23970 5.27732 5.31609 5.43675 5.80720 5.87500 6.00711 6.18522 6.21681 6.26762 6.52005 6.78518 6.85808 6.88180 8.29927 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.002679 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.508414 B =10449.035749 C =11690.240740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.107 3.893 4 H 0.088 0.912 5 C 0.059 3.941 6 O -0.344 6.344 7 C 0.514 3.486 8 O -0.548 6.548 9 C -0.130 4.130 10 C -0.178 4.178 11 C -0.099 4.099 12 C -0.201 4.201 13 C 0.065 3.935 14 C -0.493 4.493 15 H 0.089 0.911 16 C 0.027 3.973 17 N -0.831 5.831 18 Si 0.986 3.014 19 H -0.252 1.252 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.121 4.121 23 C -0.097 4.097 24 C -0.154 4.154 25 C 0.062 3.938 26 O -0.409 6.409 27 C 0.060 3.940 28 C -0.159 4.159 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.117 0.883 37 H 0.287 0.713 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.259 5.791 -15.025 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.049 3.951 4 H 0.106 0.894 5 C -0.015 4.015 6 O -0.261 6.261 7 C 0.362 3.638 8 O -0.440 6.440 9 C -0.132 4.132 10 C -0.197 4.197 11 C -0.117 4.117 12 C -0.221 4.221 13 C 0.063 3.937 14 C -0.523 4.523 15 H 0.107 0.893 16 C -0.187 4.187 17 N -0.457 5.457 18 Si 0.807 3.193 19 H -0.176 1.176 20 H -0.198 1.198 21 H -0.184 1.184 22 C -0.141 4.141 23 C -0.115 4.115 24 C -0.191 4.191 25 C -0.014 4.014 26 O -0.328 6.328 27 C -0.016 4.016 28 C -0.196 4.196 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.117 0.883 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.521 5.641 -15.464 21.302 hybrid contribution 0.878 -0.065 0.340 0.944 sum -12.644 5.576 -15.124 20.486 Atomic orbital electron populations 1.22998 0.79185 1.03786 1.01111 1.87954 1.21749 1.27081 1.95059 1.22106 0.92006 0.86025 0.95002 0.89425 1.23522 0.99237 1.01466 0.77250 1.86561 1.35201 1.81044 1.23252 1.21756 0.81646 0.72347 0.88083 1.90737 1.29683 1.48641 1.74959 1.19094 0.96310 1.09263 0.88484 1.20936 0.94806 1.08015 0.95958 1.20967 0.98459 0.99113 0.93184 1.21532 0.92514 1.07881 1.00148 1.17914 0.94041 0.90002 0.91784 1.19848 0.92440 1.43795 0.96181 0.89325 1.26890 1.04574 0.91387 0.95850 1.69867 1.29274 1.30608 1.15910 0.85183 0.75337 0.80022 0.78797 1.17609 1.19818 1.18352 1.21510 0.96325 1.01226 0.94991 1.21616 1.00808 0.95137 0.93969 1.22251 0.99271 1.00381 0.97219 1.22664 1.00651 0.82771 0.95342 1.87923 1.45629 1.19306 1.79952 1.22704 0.94413 0.93253 0.91255 1.22387 1.02145 0.96116 0.98998 0.93335 0.92081 0.88931 0.91972 0.89603 0.85165 0.83997 0.86487 0.90259 0.87565 0.87584 0.89905 0.93113 0.88493 0.91215 0.91117 0.87879 0.88315 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.87 113.37 1.23 1.64 16 2 O -0.40 -9.79 9.86 -145.57 -1.43 -11.23 16 3 C 0.11 2.39 2.19 30.59 0.07 2.46 16 4 H 0.09 1.72 7.73 -2.38 -0.02 1.70 16 5 C 0.06 1.84 4.37 71.98 0.31 2.16 16 6 O -0.34 -13.39 9.43 -53.50 -0.50 -13.90 16 7 C 0.51 24.37 7.90 70.34 0.56 24.93 16 8 O -0.55 -28.81 16.12 19.96 0.32 -28.48 16 9 C -0.13 -6.50 5.87 -20.15 -0.12 -6.62 16 10 C -0.18 -7.62 9.62 22.70 0.22 -7.41 16 11 C -0.10 -4.05 10.01 22.18 0.22 -3.83 16 12 C -0.20 -9.34 9.78 22.77 0.22 -9.12 16 13 C 0.06 3.51 5.57 -21.32 -0.12 3.39 16 14 C -0.49 -26.49 9.06 23.47 0.21 -26.28 16 15 H 0.09 4.43 7.89 -2.91 -0.02 4.41 16 16 C 0.03 1.42 5.19 85.25 0.44 1.86 16 17 N -0.83 -46.21 10.86 21.82 0.24 -45.98 16 18 Si 0.99 39.22 29.58 68.60 2.03 41.25 16 19 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.12 -6.76 8.22 23.02 0.19 -6.57 16 23 C -0.10 -1.64 2.25 -10.67 -0.02 -1.67 16 24 C -0.15 -3.02 4.92 30.69 0.15 -2.87 16 25 C 0.06 1.05 6.84 72.01 0.49 1.54 16 26 O -0.41 -8.48 10.77 -148.98 -1.60 -10.08 16 27 C 0.06 0.89 6.84 72.02 0.49 1.38 16 28 C -0.16 -2.53 5.21 30.68 0.16 -2.37 16 29 H 0.05 0.75 7.97 -2.39 -0.02 0.73 16 30 H 0.06 0.69 7.82 -2.39 -0.02 0.67 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 2.14 6.59 -2.39 -0.02 2.12 16 33 H 0.09 2.60 6.21 -2.39 -0.01 2.58 16 34 H 0.13 4.83 7.59 -2.91 -0.02 4.81 16 35 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 37 H 0.29 14.76 8.30 -92.71 -0.77 13.99 16 38 H 0.11 6.54 5.72 -2.91 -0.02 6.52 16 39 H 0.11 1.33 7.82 -2.39 -0.02 1.31 16 40 H 0.08 1.61 7.88 -2.39 -0.02 1.60 16 41 H 0.05 1.26 6.33 -2.39 -0.02 1.25 16 42 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.06 1.19 6.27 -2.38 -0.01 1.17 16 Total: -1.00 -69.33 381.75 4.73 -64.60 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.97 Total: 31.19 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 4.71 Total: -27.38 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.24 Total: -45.98 kcal Atomic # 8 Polarization: -60.47 SS G_CDS: -3.22 Total: -63.69 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -69.33 4.73 -64.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835550419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.119 kcal (2) G-P(sol) polarization free energy of solvation -69.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds