Wall clock time and date at job start Tue Mar 31 2020 20:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00011 * 2 1 4 4 H 1.08999 * 109.47089 * 30.00036 * 3 2 1 5 5 C 1.53001 * 109.47334 * 270.00003 * 3 2 1 6 6 O 1.45198 * 109.47076 * 65.00313 * 5 3 2 7 7 C 1.34708 * 116.99640 * 180.02562 * 6 5 3 8 8 O 1.21459 * 120.00243 * 359.97438 * 7 6 5 9 9 C 1.47774 * 119.99612 * 179.97438 * 7 6 5 10 10 C 1.39968 * 120.03055 * 359.71613 * 9 7 6 11 11 C 1.38315 * 120.35508 * 180.27793 * 10 9 7 12 12 C 1.37762 * 120.41731 * 0.02562 * 11 10 9 13 13 C 1.40755 * 120.04870 * 359.97438 * 12 11 10 14 14 C 1.41436 * 120.17471 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99909 * 334.91461 * 14 13 12 16 16 C 1.39940 * 120.00206 * 154.92107 * 14 13 12 17 17 N 1.30833 * 119.99545 * 342.59676 * 16 14 13 18 18 Si 1.86796 * 120.00139 * 162.60048 * 16 14 13 19 19 H 1.48496 * 109.47488 * 59.99922 * 18 16 14 20 20 H 1.48499 * 109.46904 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46931 * 299.99625 * 18 16 14 22 22 C 1.39044 * 120.03070 * 179.97438 * 9 7 6 23 23 C 1.53008 * 109.46990 * 149.99972 * 3 2 1 24 24 C 1.53170 * 109.54207 * 59.82584 * 23 3 2 25 25 C 1.53108 * 109.15593 * 183.24040 * 24 23 3 26 26 O 1.42900 * 109.48468 * 57.47227 * 25 24 23 27 27 C 1.42896 * 114.10172 * 298.88913 * 26 25 24 28 28 C 1.53100 * 109.41518 * 61.15615 * 27 26 25 29 29 H 1.08997 * 109.47586 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47610 * 300.00355 * 1 2 3 31 31 H 1.09006 * 109.47382 * 59.99558 * 1 2 3 32 32 H 1.08995 * 109.47104 * 304.99653 * 5 3 2 33 33 H 1.09004 * 109.46997 * 185.00345 * 5 3 2 34 34 H 1.08007 * 119.82172 * 0.27861 * 10 9 7 35 35 H 1.08002 * 119.79392 * 179.97438 * 11 10 9 36 36 H 1.07991 * 119.97528 * 180.02562 * 12 11 10 37 37 H 0.97000 * 119.99673 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.20561 * 359.69933 * 22 9 7 39 39 H 1.09000 * 109.53974 * 180.02562 * 23 3 2 40 40 H 1.09004 * 109.52335 * 303.05591 * 24 23 3 41 41 H 1.09004 * 109.52907 * 63.24782 * 24 23 3 42 42 H 1.09002 * 109.40508 * 297.49277 * 25 24 23 43 43 H 1.08997 * 109.49077 * 177.50685 * 25 24 23 44 44 H 1.09007 * 109.48090 * 301.17789 * 27 26 25 45 45 H 1.08999 * 109.48377 * 181.14047 * 27 26 25 46 46 H 1.09001 * 109.51898 * 182.48746 * 28 27 26 47 47 H 1.08998 * 109.56994 * 62.33416 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2176 1.7714 -1.4425 6 8 0.9280 1.9252 -2.0916 7 6 0.9344 2.3322 -3.3757 8 8 1.9883 2.5531 -3.9376 9 6 -0.3409 2.5101 -4.1008 10 6 -1.5556 2.2501 -3.4557 11 6 -2.7529 2.4088 -4.1297 12 6 -2.7642 2.8239 -5.4433 13 6 -1.5528 3.0902 -6.1087 14 6 -1.5613 3.5171 -7.4571 15 1 -2.3936 3.2656 -8.0979 16 6 -0.4914 4.2651 -7.9610 17 7 0.3366 4.8577 -7.1395 18 14 -0.2455 4.4175 -9.8065 19 1 -1.4434 5.0499 -10.4149 20 1 0.9490 5.2566 -10.0790 21 1 -0.0469 3.0675 -10.3925 22 6 -0.3351 2.9307 -5.4261 23 6 3.3589 1.2632 0.7213 24 6 4.2936 0.2852 0.0031 25 6 5.6109 0.1885 0.7775 26 8 5.3455 -0.2240 2.1197 27 6 4.5156 0.6780 2.8541 28 6 3.1536 0.7927 2.1644 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 2.8099 1.0320 -1.9815 33 1 2.7414 2.7274 -1.4437 34 1 -1.5579 1.9237 -2.4261 35 1 -3.6849 2.2052 -3.6233 36 1 -3.7032 2.9458 -5.9625 37 1 1.0785 5.3759 -7.4888 38 1 0.5996 3.1332 -5.9278 39 1 3.8031 2.2586 0.7224 40 1 3.8263 -0.6985 -0.0425 41 1 4.4892 0.6437 -1.0076 42 1 6.0980 1.1636 0.7865 43 1 6.2634 -0.5395 0.2957 44 1 4.9885 1.6595 2.8903 45 1 4.3790 0.3025 3.8683 46 1 2.5346 1.5139 2.6982 47 1 2.6615 -0.1799 2.1640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835550420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:00 Heat of formation + Delta-G solvation = -175.081795 kcal Electronic energy + Delta-G solvation = -28864.608487 eV Core-core repulsion = 24783.695796 eV Total energy + Delta-G solvation = -4080.912691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 16.22 seconds Orbital eigenvalues (eV) -40.23808 -39.54536 -38.01813 -37.30658 -35.63369 -34.38348 -33.79136 -31.41320 -30.60252 -29.65952 -29.49039 -26.56755 -25.59633 -25.21287 -23.83388 -23.04801 -21.69100 -21.03199 -20.21780 -19.77479 -17.89980 -16.99775 -16.82808 -16.31087 -16.15343 -16.06412 -15.63809 -15.26979 -15.06011 -14.90917 -14.79679 -14.45031 -14.00725 -13.92746 -13.44595 -13.23047 -12.97632 -12.67148 -12.57729 -12.46458 -12.32816 -11.87489 -11.73392 -11.50153 -11.47992 -11.23989 -11.19413 -11.15308 -10.84103 -10.77311 -10.57717 -10.45015 -10.26364 -10.20289 -9.80015 -9.79081 -9.69895 -9.36393 -9.28023 -7.79543 -7.60744 -6.87198 -4.48694 1.93469 2.74273 3.03452 3.04898 3.09328 3.11077 3.55267 3.65172 3.66788 3.86674 4.35127 4.48810 4.53659 4.60735 4.75744 4.91227 4.94927 5.07462 5.16870 5.23888 5.32953 5.36724 5.41027 5.43907 5.44957 5.49227 5.56390 5.61722 5.69779 5.80013 5.84353 5.90259 5.95513 6.08736 6.18462 6.34237 6.58575 6.87669 6.89847 6.94574 6.95796 7.11142 7.12268 7.25796 7.62390 7.69776 7.85730 8.05312 8.39144 8.50669 8.72058 8.74023 10.08203 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.002483 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.517580 B =11271.948066 C =12382.918599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.376 6.376 3 C 0.100 3.900 4 H 0.072 0.928 5 C 0.042 3.958 6 O -0.355 6.355 7 C 0.511 3.489 8 O -0.518 6.518 9 C -0.114 4.114 10 C -0.195 4.195 11 C -0.103 4.103 12 C -0.202 4.202 13 C 0.096 3.904 14 C -0.460 4.460 15 H 0.083 0.917 16 C 0.073 3.927 17 N -0.787 5.787 18 Si 0.912 3.088 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.089 4.089 23 C -0.082 4.082 24 C -0.153 4.153 25 C 0.061 3.939 26 O -0.384 6.384 27 C 0.062 3.938 28 C -0.147 4.147 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.285 0.715 38 H 0.135 0.865 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -5.585 15.734 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.294 6.294 3 C 0.042 3.958 4 H 0.090 0.910 5 C -0.033 4.033 6 O -0.272 6.272 7 C 0.358 3.642 8 O -0.407 6.407 9 C -0.116 4.116 10 C -0.215 4.215 11 C -0.121 4.121 12 C -0.222 4.222 13 C 0.093 3.907 14 C -0.489 4.489 15 H 0.101 0.899 16 C -0.146 4.146 17 N -0.412 5.412 18 Si 0.736 3.264 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.187 1.187 22 C -0.108 4.108 23 C -0.101 4.101 24 C -0.191 4.191 25 C -0.016 4.016 26 O -0.303 6.303 27 C -0.015 4.015 28 C -0.185 4.185 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.153 0.847 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.532 -5.691 15.673 17.908 hybrid contribution -0.065 0.800 -0.980 1.266 sum 6.467 -4.891 14.693 16.781 Atomic orbital electron populations 1.22915 0.80405 1.02563 1.01040 1.87860 1.20312 1.26394 1.94855 1.22109 0.95078 0.85779 0.92847 0.90987 1.23628 0.84617 1.01732 0.93300 1.86575 1.33717 1.79420 1.27530 1.21907 0.90688 0.72443 0.79125 1.90757 1.33769 1.48136 1.68046 1.18828 0.88797 1.08895 0.95056 1.20516 0.91597 1.10363 0.98974 1.20506 0.96036 1.00617 0.94986 1.21184 0.97149 1.09348 0.94476 1.17543 0.90196 0.89725 0.93187 1.19545 1.04554 1.29267 0.95500 0.89938 1.25973 0.94618 0.93336 1.00679 1.69770 1.12453 1.21660 1.37287 0.86295 0.78646 0.79401 0.82034 1.18898 1.20212 1.18673 1.21654 0.99930 0.97785 0.91441 1.21258 0.93759 0.99987 0.95093 1.22275 0.95989 1.01415 0.99424 1.22602 0.96206 1.00221 0.82541 1.87928 1.69337 1.48379 1.24619 1.22567 0.89922 0.93590 0.95432 1.22177 0.98195 1.03382 0.94755 0.89994 0.94456 0.91910 0.90549 0.90908 0.88104 0.88546 0.88322 0.90340 0.84726 0.89752 0.89650 0.90524 0.93302 0.88781 0.93337 0.88901 0.90982 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.71 101.05 1.08 1.40 16 2 O -0.38 -4.84 8.89 -38.79 -0.35 -5.18 16 3 C 0.10 1.18 2.24 -26.73 -0.06 1.12 16 4 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 5 C 0.04 0.62 4.64 37.16 0.17 0.79 16 6 O -0.35 -6.49 7.57 -43.30 -0.33 -6.81 16 7 C 0.51 11.36 7.90 34.63 0.27 11.64 16 8 O -0.52 -12.58 16.12 -19.23 -0.31 -12.89 16 9 C -0.11 -2.72 5.87 -105.05 -0.62 -3.34 16 10 C -0.19 -4.18 9.62 -38.91 -0.37 -4.55 16 11 C -0.10 -2.18 10.01 -39.73 -0.40 -2.58 16 12 C -0.20 -4.69 9.78 -38.80 -0.38 -5.07 16 13 C 0.10 2.49 5.57 -106.87 -0.59 1.89 16 14 C -0.46 -11.82 9.05 -37.73 -0.34 -12.16 16 15 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 16 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 17 N -0.79 -20.44 10.97 55.55 0.61 -19.83 16 18 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 19 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 22 C -0.09 -2.33 8.23 -38.43 -0.32 -2.64 16 23 C -0.08 -0.80 2.16 -90.44 -0.20 -0.99 16 24 C -0.15 -1.54 4.87 -26.59 -0.13 -1.67 16 25 C 0.06 0.55 6.84 37.21 0.25 0.81 16 26 O -0.38 -4.05 10.77 -35.23 -0.38 -4.43 16 27 C 0.06 0.50 6.84 37.21 0.25 0.76 16 28 C -0.15 -1.27 5.32 -26.59 -0.14 -1.41 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.06 0.86 6.37 -51.93 -0.33 0.53 16 32 H 0.08 1.17 6.79 -51.93 -0.35 0.82 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.10 1.91 7.59 -52.48 -0.40 1.51 16 35 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 38 H 0.14 3.79 5.76 -52.49 -0.30 3.49 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.98 7.60 -51.93 -0.39 0.59 16 41 H 0.08 0.78 6.74 -51.93 -0.35 0.43 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.83 7.60 -51.93 -0.39 0.44 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -29.22 381.80 -8.75 -37.98 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.12 Total: 6.30 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -1.60 Total: -14.28 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.61 Total: -19.83 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.36 Total: -29.32 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.22 -8.75 -37.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835550420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.106 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.23 seconds