Wall clock time and date at job start Tue Mar 31 2020 20:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00011 * 2 1 4 4 H 1.08999 * 109.47089 * 30.00036 * 3 2 1 5 5 C 1.53001 * 109.47334 * 270.00003 * 3 2 1 6 6 O 1.45198 * 109.47076 * 65.00313 * 5 3 2 7 7 C 1.34708 * 116.99640 * 180.02562 * 6 5 3 8 8 O 1.21459 * 120.00243 * 359.97438 * 7 6 5 9 9 C 1.47774 * 119.99612 * 179.97438 * 7 6 5 10 10 C 1.39968 * 120.03055 * 359.71613 * 9 7 6 11 11 C 1.38315 * 120.35508 * 180.27793 * 10 9 7 12 12 C 1.37762 * 120.41731 * 0.02562 * 11 10 9 13 13 C 1.40755 * 120.04870 * 359.97438 * 12 11 10 14 14 C 1.41436 * 120.17471 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99909 * 334.91461 * 14 13 12 16 16 C 1.39940 * 120.00206 * 154.92107 * 14 13 12 17 17 N 1.30833 * 119.99545 * 342.59676 * 16 14 13 18 18 Si 1.86796 * 120.00139 * 162.60048 * 16 14 13 19 19 H 1.48496 * 109.47488 * 59.99922 * 18 16 14 20 20 H 1.48499 * 109.46904 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46931 * 299.99625 * 18 16 14 22 22 C 1.39044 * 120.03070 * 179.97438 * 9 7 6 23 23 C 1.53008 * 109.46990 * 149.99972 * 3 2 1 24 24 C 1.53170 * 109.54207 * 59.82584 * 23 3 2 25 25 C 1.53108 * 109.15593 * 183.24040 * 24 23 3 26 26 O 1.42900 * 109.48468 * 57.47227 * 25 24 23 27 27 C 1.42896 * 114.10172 * 298.88913 * 26 25 24 28 28 C 1.53100 * 109.41518 * 61.15615 * 27 26 25 29 29 H 1.08997 * 109.47586 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47610 * 300.00355 * 1 2 3 31 31 H 1.09006 * 109.47382 * 59.99558 * 1 2 3 32 32 H 1.08995 * 109.47104 * 304.99653 * 5 3 2 33 33 H 1.09004 * 109.46997 * 185.00345 * 5 3 2 34 34 H 1.08007 * 119.82172 * 0.27861 * 10 9 7 35 35 H 1.08002 * 119.79392 * 179.97438 * 11 10 9 36 36 H 1.07991 * 119.97528 * 180.02562 * 12 11 10 37 37 H 0.97000 * 119.99673 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.20561 * 359.69933 * 22 9 7 39 39 H 1.09000 * 109.53974 * 180.02562 * 23 3 2 40 40 H 1.09004 * 109.52335 * 303.05591 * 24 23 3 41 41 H 1.09004 * 109.52907 * 63.24782 * 24 23 3 42 42 H 1.09002 * 109.40508 * 297.49277 * 25 24 23 43 43 H 1.08997 * 109.49077 * 177.50685 * 25 24 23 44 44 H 1.09007 * 109.48090 * 301.17789 * 27 26 25 45 45 H 1.08999 * 109.48377 * 181.14047 * 27 26 25 46 46 H 1.09001 * 109.51898 * 182.48746 * 28 27 26 47 47 H 1.08998 * 109.56994 * 62.33416 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2176 1.7714 -1.4425 6 8 0.9280 1.9252 -2.0916 7 6 0.9344 2.3322 -3.3757 8 8 1.9883 2.5531 -3.9376 9 6 -0.3409 2.5101 -4.1008 10 6 -1.5556 2.2501 -3.4557 11 6 -2.7529 2.4088 -4.1297 12 6 -2.7642 2.8239 -5.4433 13 6 -1.5528 3.0902 -6.1087 14 6 -1.5613 3.5171 -7.4571 15 1 -2.3936 3.2656 -8.0979 16 6 -0.4914 4.2651 -7.9610 17 7 0.3366 4.8577 -7.1395 18 14 -0.2455 4.4175 -9.8065 19 1 -1.4434 5.0499 -10.4149 20 1 0.9490 5.2566 -10.0790 21 1 -0.0469 3.0675 -10.3925 22 6 -0.3351 2.9307 -5.4261 23 6 3.3589 1.2632 0.7213 24 6 4.2936 0.2852 0.0031 25 6 5.6109 0.1885 0.7775 26 8 5.3455 -0.2240 2.1197 27 6 4.5156 0.6780 2.8541 28 6 3.1536 0.7927 2.1644 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 2.8099 1.0320 -1.9815 33 1 2.7414 2.7274 -1.4437 34 1 -1.5579 1.9237 -2.4261 35 1 -3.6849 2.2052 -3.6233 36 1 -3.7032 2.9458 -5.9625 37 1 1.0785 5.3759 -7.4888 38 1 0.5996 3.1332 -5.9278 39 1 3.8031 2.2586 0.7224 40 1 3.8263 -0.6985 -0.0425 41 1 4.4892 0.6437 -1.0076 42 1 6.0980 1.1636 0.7865 43 1 6.2634 -0.5395 0.2957 44 1 4.9885 1.6595 2.8903 45 1 4.3790 0.3025 3.8683 46 1 2.5346 1.5139 2.6982 47 1 2.6615 -0.1799 2.1640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835550420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:41 Heat of formation + Delta-G solvation = -190.264275 kcal Electronic energy + Delta-G solvation = -28865.266848 eV Core-core repulsion = 24783.695796 eV Total energy + Delta-G solvation = -4081.571052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 15.32 seconds Orbital eigenvalues (eV) -41.61019 -40.64193 -39.28845 -38.79136 -37.23632 -35.63776 -35.21960 -32.38253 -32.06019 -31.39622 -30.71424 -27.61801 -27.28298 -26.31200 -24.81903 -24.37340 -22.89675 -22.63397 -21.60052 -20.89915 -19.66135 -18.30527 -18.06000 -17.88693 -17.17175 -16.98041 -16.93758 -16.71501 -16.50283 -16.08042 -15.93172 -15.56327 -15.22942 -14.95358 -14.76407 -14.69628 -14.41718 -14.30858 -13.93425 -13.55429 -13.39598 -13.19108 -13.00165 -12.84331 -12.80055 -12.62303 -12.44241 -12.24108 -12.20595 -12.08976 -12.04894 -11.76624 -11.57847 -11.37702 -11.36509 -11.16483 -11.10013 -10.64088 -10.40012 -9.63679 -9.46165 -8.70334 -6.41794 0.10884 0.95300 1.36405 1.45633 1.49771 1.60158 1.78034 2.17688 2.70417 2.74253 2.99236 3.45609 3.60928 3.61401 3.77941 3.94363 3.98345 4.07679 4.09135 4.20379 4.33701 4.38741 4.42436 4.47194 4.56608 4.59552 4.62656 4.69875 4.73264 4.78574 4.80694 4.84850 4.94203 4.98097 5.03301 5.10856 5.12704 5.18903 5.25615 5.27860 5.42094 5.43075 5.79554 5.86989 5.99175 6.17100 6.21232 6.28860 6.50979 6.77821 6.84562 6.87018 8.27102 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.002483 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.517580 B =11271.948066 C =12382.918599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.388 6.388 3 C 0.107 3.893 4 H 0.086 0.914 5 C 0.035 3.965 6 O -0.343 6.343 7 C 0.514 3.486 8 O -0.548 6.548 9 C -0.129 4.129 10 C -0.179 4.179 11 C -0.099 4.099 12 C -0.203 4.203 13 C 0.065 3.935 14 C -0.494 4.494 15 H 0.088 0.912 16 C 0.030 3.970 17 N -0.827 5.827 18 Si 0.983 3.017 19 H -0.252 1.252 20 H -0.272 1.272 21 H -0.261 1.261 22 C -0.124 4.124 23 C -0.081 4.081 24 C -0.152 4.152 25 C 0.061 3.939 26 O -0.405 6.405 27 C 0.057 3.943 28 C -0.141 4.141 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.288 0.712 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 -5.775 17.618 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.307 6.307 3 C 0.049 3.951 4 H 0.104 0.896 5 C -0.039 4.039 6 O -0.260 6.260 7 C 0.362 3.638 8 O -0.440 6.440 9 C -0.130 4.130 10 C -0.198 4.198 11 C -0.116 4.116 12 C -0.223 4.223 13 C 0.063 3.937 14 C -0.523 4.523 15 H 0.106 0.894 16 C -0.185 4.185 17 N -0.452 5.452 18 Si 0.804 3.196 19 H -0.176 1.176 20 H -0.197 1.197 21 H -0.185 1.185 22 C -0.143 4.143 23 C -0.099 4.099 24 C -0.189 4.189 25 C -0.015 4.015 26 O -0.324 6.324 27 C -0.019 4.019 28 C -0.179 4.179 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.109 0.891 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.579 -5.895 17.592 19.374 hybrid contribution 0.171 0.768 -1.357 1.569 sum 5.750 -5.127 16.235 17.970 Atomic orbital electron populations 1.23006 0.79800 1.03460 1.00945 1.87870 1.21094 1.26978 1.94710 1.22196 0.96606 0.85633 0.90709 0.89631 1.24022 0.83088 1.02015 0.94750 1.86558 1.35712 1.78350 1.25396 1.21753 0.89814 0.72037 0.80217 1.90735 1.34644 1.49520 1.69079 1.19082 0.90625 1.08636 0.94640 1.20930 0.90738 1.07973 1.00161 1.20971 0.97742 0.98783 0.94144 1.21509 0.96825 1.08356 0.95578 1.17907 0.91160 0.90657 0.93970 1.19840 1.05745 1.30618 0.96137 0.89408 1.26862 0.93900 0.92456 1.05302 1.69865 1.13240 1.22790 1.39353 0.85225 0.78975 0.79362 0.76066 1.17563 1.19706 1.18504 1.21459 0.99065 1.00895 0.92927 1.21318 0.92342 1.00738 0.95525 1.22224 0.96732 1.00520 0.99464 1.22643 0.95654 1.01135 0.82066 1.87904 1.69851 1.49539 1.25100 1.22744 0.89341 0.94071 0.95726 1.22129 0.98744 1.02998 0.93980 0.88800 0.92405 0.93952 0.91483 0.90314 0.84938 0.84022 0.86655 0.90168 0.87802 0.88161 0.91541 0.91177 0.91967 0.88290 0.91925 0.87503 0.89125 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.71 113.37 1.21 1.72 16 2 O -0.39 -9.43 8.89 -145.57 -1.29 -10.73 16 3 C 0.11 2.34 2.24 30.60 0.07 2.41 16 4 H 0.09 1.67 7.79 -2.39 -0.02 1.65 16 5 C 0.04 1.02 4.64 71.98 0.33 1.36 16 6 O -0.34 -12.34 7.57 -53.52 -0.41 -12.75 16 7 C 0.51 23.22 7.90 70.34 0.56 23.78 16 8 O -0.55 -27.68 16.12 19.97 0.32 -27.36 16 9 C -0.13 -6.18 5.87 -20.14 -0.12 -6.30 16 10 C -0.18 -7.31 9.62 22.71 0.22 -7.09 16 11 C -0.10 -3.89 10.01 22.18 0.22 -3.66 16 12 C -0.20 -9.25 9.78 22.77 0.22 -9.03 16 13 C 0.07 3.48 5.57 -21.32 -0.12 3.36 16 14 C -0.49 -26.21 9.05 23.47 0.21 -26.00 16 15 H 0.09 4.35 7.90 -2.91 -0.02 4.33 16 16 C 0.03 1.52 5.14 85.25 0.44 1.96 16 17 N -0.83 -45.05 10.97 21.83 0.24 -44.81 16 18 Si 0.98 38.65 29.59 68.60 2.03 40.68 16 19 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 20 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 C -0.12 -6.77 8.23 23.02 0.19 -6.58 16 23 C -0.08 -1.41 2.16 -10.68 -0.02 -1.44 16 24 C -0.15 -2.95 4.87 30.69 0.15 -2.80 16 25 C 0.06 1.04 6.84 72.02 0.49 1.54 16 26 O -0.40 -7.92 10.77 -148.98 -1.60 -9.52 16 27 C 0.06 0.80 6.84 72.02 0.49 1.29 16 28 C -0.14 -2.08 5.32 30.68 0.16 -1.92 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 31 H 0.04 1.07 6.37 -2.38 -0.02 1.05 16 32 H 0.07 2.08 6.79 -2.39 -0.02 2.07 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.13 4.56 7.59 -2.91 -0.02 4.54 16 35 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.12 4.76 8.06 -2.92 -0.02 4.74 16 37 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 38 H 0.10 6.26 5.76 -2.91 -0.02 6.24 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.54 7.60 -2.39 -0.02 1.52 16 41 H 0.07 1.43 6.74 -2.38 -0.02 1.41 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.25 7.60 -2.39 -0.02 1.23 16 Total: -1.00 -66.16 381.80 4.97 -61.19 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.97 Total: 30.69 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 4.71 Total: -27.40 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.24 Total: -44.81 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -2.98 Total: -60.36 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -66.16 4.97 -61.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835550420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.073 kcal (2) G-P(sol) polarization free energy of solvation -66.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.32 seconds