Wall clock time and date at job start Tue Mar 31 2020 17:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47015 * 2 1 4 4 H 1.08996 * 109.47115 * 55.00169 * 3 2 1 5 5 O 1.45196 * 109.47225 * 295.00070 * 3 2 1 6 6 C 1.34235 * 117.00319 * 89.99758 * 5 3 2 7 7 O 1.20824 * 119.99561 * 359.97438 * 6 5 3 8 8 C 1.50693 * 120.00378 * 180.02562 * 6 5 3 9 9 C 1.50697 * 109.47226 * 180.02562 * 8 6 5 10 10 C 1.37632 * 120.12988 * 264.99824 * 9 8 6 11 11 C 1.38616 * 120.25141 * 180.29923 * 10 9 8 12 12 C 1.38657 * 120.49894 * 359.43993 * 11 10 9 13 13 C 1.37599 * 120.24868 * 0.56079 * 12 11 10 14 14 C 1.40698 * 120.12600 * 85.02373 * 9 8 6 15 15 C 1.41401 * 120.24431 * 359.95261 * 14 9 8 16 16 H 1.07996 * 120.00140 * 329.79416 * 15 14 9 17 17 C 1.39943 * 119.99611 * 149.80024 * 15 14 9 18 18 N 1.30828 * 120.00177 * 162.08912 * 17 15 14 19 19 Si 1.86803 * 120.00186 * 342.08044 * 17 15 14 20 20 H 1.48499 * 109.47049 * 95.39710 * 19 17 15 21 21 H 1.48502 * 109.46957 * 215.39592 * 19 17 15 22 22 H 1.48500 * 109.46884 * 335.39299 * 19 17 15 23 23 C 1.53002 * 109.47224 * 174.99867 * 3 2 1 24 24 H 1.09010 * 109.46827 * 60.00300 * 23 3 2 25 25 C 1.52996 * 109.47001 * 300.00491 * 23 3 2 26 26 C 1.50693 * 109.47098 * 179.97438 * 23 3 2 27 27 O 1.20828 * 120.00146 * 0.02562 * 26 23 3 28 28 O 1.34231 * 119.99963 * 179.97438 * 26 23 3 29 29 C 1.45201 * 116.99945 * 180.02562 * 28 26 23 30 30 H 1.08998 * 109.46986 * 299.99829 * 1 2 3 31 31 H 1.09003 * 109.46915 * 60.00252 * 1 2 3 32 32 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47065 * 240.00625 * 2 1 3 34 34 H 1.08997 * 109.47342 * 120.00292 * 2 1 3 35 35 H 1.08999 * 109.47136 * 59.99898 * 8 6 5 36 36 H 1.09003 * 109.46758 * 300.00143 * 8 6 5 37 37 H 1.08001 * 119.87446 * 0.02562 * 10 9 8 38 38 H 1.07993 * 119.75152 * 179.70460 * 11 10 9 39 39 H 1.08003 * 119.87995 * 180.30216 * 12 11 10 40 40 H 1.08000 * 120.12935 * 179.74001 * 13 12 11 41 41 H 0.96989 * 120.00516 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.47327 * 59.99930 * 25 23 3 43 43 H 1.09006 * 109.46806 * 179.97438 * 25 23 3 44 44 H 1.08996 * 109.47031 * 299.99511 * 25 23 3 45 45 H 1.09000 * 109.46847 * 60.01051 * 29 28 26 46 46 H 1.09005 * 109.47109 * 180.02562 * 29 28 26 47 47 H 1.08994 * 109.47725 * 300.01000 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6558 2.0917 -1.2406 6 6 0.4726 2.7255 -1.2560 7 8 -0.2193 2.7369 -0.2656 8 6 0.0068 3.4216 -2.5087 9 6 -1.3407 4.0498 -2.2628 10 6 -2.4904 3.3749 -2.6051 11 6 -3.7310 3.9530 -2.3858 12 6 -3.8296 5.2103 -1.8096 13 6 -2.6936 5.9033 -1.4594 14 6 -1.4284 5.3287 -1.6829 15 6 -0.2542 6.0313 -1.3267 16 1 0.6308 5.4883 -1.0296 17 6 -0.2389 7.4303 -1.3591 18 7 0.6893 8.0895 -0.7145 19 14 -1.5436 8.3566 -2.3231 20 1 -2.6463 8.7514 -1.4103 21 1 -0.9423 9.5723 -2.9279 22 1 -2.0792 7.4823 -3.3974 23 6 3.5648 1.4444 0.1258 24 1 3.9995 0.9054 -0.7162 25 6 3.9695 0.7603 1.4330 26 6 4.0671 2.8652 0.1251 27 8 3.2857 3.7822 0.0340 28 8 5.3826 3.1120 0.2269 29 6 5.7945 4.5043 0.2202 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 -0.0721 2.6970 -3.3191 36 1 0.7238 4.1958 -2.7820 37 1 -2.4255 2.3931 -3.0504 38 1 -4.6277 3.4182 -2.6619 39 1 -4.8016 5.6491 -1.6388 40 1 -2.7726 6.8843 -1.0146 41 1 0.7001 9.0590 -0.7372 42 1 3.6063 -0.2673 1.4330 43 1 5.0559 0.7613 1.5224 44 1 3.5350 1.2993 2.2748 45 1 5.3334 5.0237 1.0603 46 1 6.8795 4.5627 0.3079 47 1 5.4801 4.9719 -0.7128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836113442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:49 Heat of formation + Delta-G solvation = -165.585210 kcal Electronic energy + Delta-G solvation = -30202.988889 eV Core-core repulsion = 26122.488001 eV Total energy + Delta-G solvation = -4080.500888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.69861 -39.78280 -37.96481 -36.76070 -35.96279 -34.53210 -33.53645 -32.18063 -31.78024 -30.28648 -27.78433 -27.51279 -26.24892 -24.80494 -24.20842 -21.81790 -21.32769 -20.81873 -19.96529 -19.33474 -17.51786 -17.29917 -17.10397 -16.71089 -16.23586 -16.02796 -15.65809 -15.31602 -14.40373 -14.26078 -14.10099 -13.96368 -13.79068 -13.51476 -13.27281 -12.85431 -12.63435 -12.49639 -12.34501 -12.19774 -12.04138 -11.93333 -11.85810 -11.84089 -11.58608 -11.36629 -11.12923 -11.01294 -10.75984 -10.70086 -10.68110 -10.60388 -10.22597 -10.21340 -9.90544 -9.66973 -9.54589 -9.49530 -9.07860 -7.58082 -7.47503 -6.86973 -4.41819 2.38799 2.52869 2.73151 2.75360 3.10232 3.15704 3.21591 3.36069 3.36712 4.03341 4.42918 4.56869 4.61866 4.84956 5.00480 5.04393 5.15803 5.20576 5.27992 5.30893 5.44232 5.50268 5.57257 5.62697 5.68238 5.73005 5.87710 5.89784 5.93199 5.98367 6.01626 6.11272 6.20449 6.25701 6.35702 6.47184 6.51552 6.62350 6.75637 6.98962 7.12000 7.25102 7.48404 7.69589 7.78825 7.91601 7.96560 8.18978 8.45184 8.62699 8.73500 8.88007 10.14807 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.004625 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.247083 B = 6053.061634 C = 8086.081951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.100 3.900 4 H 0.093 0.907 5 O -0.356 6.356 6 C 0.469 3.531 7 O -0.488 6.488 8 C -0.045 4.045 9 C -0.178 4.178 10 C -0.064 4.064 11 C -0.246 4.246 12 C -0.077 4.077 13 C -0.234 4.234 14 C 0.110 3.890 15 C -0.441 4.441 16 H 0.094 0.906 17 C 0.085 3.915 18 N -0.804 5.804 19 Si 0.909 3.091 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.243 1.243 23 C -0.078 4.078 24 H 0.116 0.884 25 C -0.145 4.145 26 C 0.453 3.547 27 O -0.471 6.471 28 O -0.365 6.365 29 C 0.036 3.964 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.283 0.717 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.098 0.902 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.786 -12.667 0.539 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.045 3.955 4 H 0.111 0.889 5 O -0.274 6.274 6 C 0.312 3.688 7 O -0.373 6.373 8 C -0.083 4.083 9 C -0.179 4.179 10 C -0.082 4.082 11 C -0.265 4.265 12 C -0.095 4.095 13 C -0.253 4.253 14 C 0.107 3.893 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.134 4.134 18 N -0.427 5.427 19 Si 0.736 3.264 20 H -0.198 1.198 21 H -0.220 1.220 22 H -0.166 1.166 23 C -0.097 4.097 24 H 0.134 0.866 25 C -0.202 4.202 26 C 0.293 3.707 27 O -0.355 6.355 28 O -0.283 6.283 29 C -0.058 4.058 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.116 0.884 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.535 -12.126 0.945 14.858 hybrid contribution -0.472 0.875 -0.128 1.002 sum 8.063 -11.251 0.816 13.866 Atomic orbital electron populations 1.21811 0.94338 1.01101 1.03479 1.22026 0.97617 0.94910 1.02949 1.22442 0.91328 0.93488 0.88289 0.88947 1.86522 1.39050 1.64305 1.37534 1.24025 0.78092 0.75247 0.91447 1.90621 1.54837 1.56352 1.35497 1.19977 0.97426 0.99022 0.91850 1.19045 0.91262 0.97942 1.09672 1.20424 0.92596 0.96866 0.98349 1.20303 0.95845 0.97882 1.12448 1.20605 0.96636 0.94856 0.97441 1.20991 0.92880 1.01016 1.10369 1.17490 0.92534 0.91328 0.87930 1.19532 0.98843 0.91023 1.37517 0.88853 1.26180 0.95845 0.98205 0.93188 1.69732 1.31958 1.09693 1.31363 0.86355 0.80165 0.78260 0.81632 1.19756 1.21955 1.16634 1.21150 0.95298 0.90789 1.02447 0.86576 1.21840 1.02864 1.01002 0.94500 1.23561 0.80794 0.92596 0.73754 1.90867 1.56194 1.46218 1.42211 1.86434 1.26510 1.30980 1.84345 1.23249 1.00373 0.79019 1.03177 0.91677 0.92524 0.92915 0.90975 0.90092 0.89477 0.87312 0.89041 0.88984 0.89009 0.88321 0.90650 0.90368 0.90504 0.91644 0.91802 0.88407 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.57 37.16 0.32 -1.76 16 2 C -0.14 -1.61 5.43 -26.73 -0.15 -1.76 16 3 C 0.10 1.51 1.37 -26.73 -0.04 1.47 16 4 H 0.09 1.66 7.11 -51.93 -0.37 1.29 16 5 O -0.36 -6.50 8.73 -45.48 -0.40 -6.90 16 6 C 0.47 9.92 6.03 36.00 0.22 10.14 16 7 O -0.49 -11.61 13.17 -18.75 -0.25 -11.86 16 8 C -0.05 -0.94 5.31 -29.04 -0.15 -1.10 16 9 C -0.18 -4.21 4.43 -103.92 -0.46 -4.67 16 10 C -0.06 -1.40 9.66 -39.66 -0.38 -1.78 16 11 C -0.25 -5.33 10.05 -39.29 -0.39 -5.73 16 12 C -0.08 -1.76 10.02 -39.66 -0.40 -2.16 16 13 C -0.23 -5.94 7.17 -38.87 -0.28 -6.22 16 14 C 0.11 2.91 5.10 -106.82 -0.54 2.37 16 15 C -0.44 -12.40 8.55 -37.74 -0.32 -12.72 16 16 H 0.09 2.85 7.00 -52.49 -0.37 2.48 16 17 C 0.08 2.31 5.41 -17.34 -0.09 2.21 16 18 N -0.80 -22.27 13.93 55.55 0.77 -21.50 16 19 Si 0.91 21.41 24.52 -169.99 -4.17 17.25 16 20 H -0.27 -6.26 6.71 56.52 0.38 -5.88 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.24 -5.81 6.86 56.52 0.39 -5.42 16 23 C -0.08 -0.95 2.64 -91.78 -0.24 -1.19 16 24 H 0.12 1.17 8.14 -51.92 -0.42 0.75 16 25 C -0.14 -1.27 8.78 37.16 0.33 -0.95 16 26 C 0.45 7.12 7.11 36.00 0.26 7.37 16 27 O -0.47 -9.84 15.03 -24.97 -0.38 -10.21 16 28 O -0.37 -4.94 10.47 -39.26 -0.41 -5.35 16 29 C 0.04 0.43 10.56 101.05 1.07 1.49 16 30 H 0.06 1.01 7.80 -51.93 -0.40 0.60 16 31 H 0.06 0.92 6.06 -51.93 -0.31 0.60 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.73 6.17 -51.93 -0.32 0.41 16 35 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 36 H 0.11 2.35 7.13 -51.93 -0.37 1.98 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 40 H 0.10 2.51 4.77 -52.49 -0.25 2.26 16 41 H 0.28 7.09 8.30 -40.82 -0.34 6.75 16 42 H 0.08 0.52 6.32 -51.93 -0.33 0.19 16 43 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -33.51 380.68 -7.32 -40.83 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.96 Total: 6.97 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -1.27 Total: -14.97 kcal Atomic # 7 Polarization: -22.27 SS G_CDS: 0.77 Total: -21.50 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.43 Total: -34.31 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.17 Total: 17.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.51 -7.32 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836113442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.760 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds