Wall clock time and date at job start Tue Mar 31 2020 17:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47015 * 2 1 4 4 H 1.08996 * 109.47115 * 55.00169 * 3 2 1 5 5 O 1.45196 * 109.47225 * 295.00070 * 3 2 1 6 6 C 1.34235 * 117.00319 * 89.99758 * 5 3 2 7 7 O 1.20824 * 119.99561 * 359.97438 * 6 5 3 8 8 C 1.50693 * 120.00378 * 180.02562 * 6 5 3 9 9 C 1.50697 * 109.47226 * 180.02562 * 8 6 5 10 10 C 1.37632 * 120.12988 * 264.99824 * 9 8 6 11 11 C 1.38616 * 120.25141 * 180.29923 * 10 9 8 12 12 C 1.38657 * 120.49894 * 359.43993 * 11 10 9 13 13 C 1.37599 * 120.24868 * 0.56079 * 12 11 10 14 14 C 1.40698 * 120.12600 * 85.02373 * 9 8 6 15 15 C 1.41401 * 120.24431 * 359.95261 * 14 9 8 16 16 H 1.07996 * 120.00140 * 329.79416 * 15 14 9 17 17 C 1.39943 * 119.99611 * 149.80024 * 15 14 9 18 18 N 1.30828 * 120.00177 * 162.08912 * 17 15 14 19 19 Si 1.86803 * 120.00186 * 342.08044 * 17 15 14 20 20 H 1.48499 * 109.47049 * 95.39710 * 19 17 15 21 21 H 1.48502 * 109.46957 * 215.39592 * 19 17 15 22 22 H 1.48500 * 109.46884 * 335.39299 * 19 17 15 23 23 C 1.53002 * 109.47224 * 174.99867 * 3 2 1 24 24 H 1.09010 * 109.46827 * 60.00300 * 23 3 2 25 25 C 1.52996 * 109.47001 * 300.00491 * 23 3 2 26 26 C 1.50693 * 109.47098 * 179.97438 * 23 3 2 27 27 O 1.20828 * 120.00146 * 0.02562 * 26 23 3 28 28 O 1.34231 * 119.99963 * 179.97438 * 26 23 3 29 29 C 1.45201 * 116.99945 * 180.02562 * 28 26 23 30 30 H 1.08998 * 109.46986 * 299.99829 * 1 2 3 31 31 H 1.09003 * 109.46915 * 60.00252 * 1 2 3 32 32 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47065 * 240.00625 * 2 1 3 34 34 H 1.08997 * 109.47342 * 120.00292 * 2 1 3 35 35 H 1.08999 * 109.47136 * 59.99898 * 8 6 5 36 36 H 1.09003 * 109.46758 * 300.00143 * 8 6 5 37 37 H 1.08001 * 119.87446 * 0.02562 * 10 9 8 38 38 H 1.07993 * 119.75152 * 179.70460 * 11 10 9 39 39 H 1.08003 * 119.87995 * 180.30216 * 12 11 10 40 40 H 1.08000 * 120.12935 * 179.74001 * 13 12 11 41 41 H 0.96989 * 120.00516 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.47327 * 59.99930 * 25 23 3 43 43 H 1.09006 * 109.46806 * 179.97438 * 25 23 3 44 44 H 1.08996 * 109.47031 * 299.99511 * 25 23 3 45 45 H 1.09000 * 109.46847 * 60.01051 * 29 28 26 46 46 H 1.09005 * 109.47109 * 180.02562 * 29 28 26 47 47 H 1.08994 * 109.47725 * 300.01000 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6558 2.0917 -1.2406 6 6 0.4726 2.7255 -1.2560 7 8 -0.2193 2.7369 -0.2656 8 6 0.0068 3.4216 -2.5087 9 6 -1.3407 4.0498 -2.2628 10 6 -2.4904 3.3749 -2.6051 11 6 -3.7310 3.9530 -2.3858 12 6 -3.8296 5.2103 -1.8096 13 6 -2.6936 5.9033 -1.4594 14 6 -1.4284 5.3287 -1.6829 15 6 -0.2542 6.0313 -1.3267 16 1 0.6308 5.4883 -1.0296 17 6 -0.2389 7.4303 -1.3591 18 7 0.6893 8.0895 -0.7145 19 14 -1.5436 8.3566 -2.3231 20 1 -2.6463 8.7514 -1.4103 21 1 -0.9423 9.5723 -2.9279 22 1 -2.0792 7.4823 -3.3974 23 6 3.5648 1.4444 0.1258 24 1 3.9995 0.9054 -0.7162 25 6 3.9695 0.7603 1.4330 26 6 4.0671 2.8652 0.1251 27 8 3.2857 3.7822 0.0340 28 8 5.3826 3.1120 0.2269 29 6 5.7945 4.5043 0.2202 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 -0.0721 2.6970 -3.3191 36 1 0.7238 4.1958 -2.7820 37 1 -2.4255 2.3931 -3.0504 38 1 -4.6277 3.4182 -2.6619 39 1 -4.8016 5.6491 -1.6388 40 1 -2.7726 6.8843 -1.0146 41 1 0.7001 9.0590 -0.7372 42 1 3.6063 -0.2673 1.4330 43 1 5.0559 0.7613 1.5224 44 1 3.5350 1.2993 2.2748 45 1 5.3334 5.0237 1.0603 46 1 6.8795 4.5627 0.3079 47 1 5.4801 4.9719 -0.7128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836113442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:48 Heat of formation + Delta-G solvation = -184.943690 kcal Electronic energy + Delta-G solvation = -30203.828335 eV Core-core repulsion = 26122.488001 eV Total energy + Delta-G solvation = -4081.340334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = -2.83 seconds Orbital eigenvalues (eV) -42.03832 -41.25527 -39.72014 -38.14402 -37.35498 -35.83021 -35.52438 -33.66941 -33.07082 -32.21239 -29.20557 -28.78959 -27.48652 -26.67610 -25.26989 -23.39288 -22.99799 -22.22937 -21.14917 -21.06800 -19.29373 -18.87199 -18.51526 -17.94962 -17.63076 -17.49221 -17.33765 -16.79226 -16.21476 -15.93969 -15.54544 -15.08361 -15.04687 -14.97811 -14.66137 -14.45521 -14.09583 -13.94007 -13.77824 -13.60308 -13.34621 -13.19464 -13.13556 -13.07410 -12.96585 -12.76953 -12.73269 -12.65627 -12.53286 -12.05800 -12.02475 -11.88461 -11.72690 -11.58052 -11.55965 -11.42714 -11.26682 -11.08100 -11.00198 -9.43576 -9.36474 -8.88865 -6.49683 0.71140 0.87283 1.14093 1.22866 1.35810 1.45893 1.46991 1.63844 1.90011 2.10793 2.61740 3.32559 3.51331 3.56999 3.88164 3.90558 4.03583 4.07568 4.20618 4.21857 4.23780 4.25271 4.27775 4.42720 4.49072 4.56322 4.58729 4.64859 4.66061 4.71505 4.83245 4.88313 4.91140 4.92909 4.99513 5.10108 5.12501 5.22747 5.33395 5.33986 5.36669 5.57091 5.67213 5.83587 5.92070 6.02020 6.26290 6.43175 6.68822 6.76303 6.85118 7.01270 8.19998 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.004625 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.247083 B = 6053.061634 C = 8086.081951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.091 3.909 4 H 0.051 0.949 5 O -0.356 6.356 6 C 0.474 3.526 7 O -0.524 6.524 8 C -0.049 4.049 9 C -0.183 4.183 10 C -0.070 4.070 11 C -0.227 4.227 12 C -0.085 4.085 13 C -0.255 4.255 14 C 0.085 3.915 15 C -0.472 4.472 16 H 0.046 0.954 17 C 0.044 3.956 18 N -0.853 5.853 19 Si 0.969 3.031 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.248 1.248 23 C -0.072 4.072 24 H 0.150 0.850 25 C -0.139 4.139 26 C 0.450 3.550 27 O -0.537 6.537 28 O -0.353 6.353 29 C 0.031 3.969 30 H 0.036 0.964 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.291 0.709 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.144 0.856 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.012 -16.046 -0.784 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.036 3.964 4 H 0.070 0.930 5 O -0.274 6.274 6 C 0.318 3.682 7 O -0.412 6.412 8 C -0.086 4.086 9 C -0.184 4.184 10 C -0.088 4.088 11 C -0.246 4.246 12 C -0.103 4.103 13 C -0.274 4.274 14 C 0.083 3.917 15 C -0.501 4.501 16 H 0.064 0.936 17 C -0.170 4.170 18 N -0.480 5.480 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.171 1.171 23 C -0.090 4.090 24 H 0.167 0.833 25 C -0.196 4.196 26 C 0.293 3.707 27 O -0.425 6.425 28 O -0.270 6.270 29 C -0.063 4.063 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.162 0.838 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.802 -15.535 -0.380 17.389 hybrid contribution -0.257 1.705 0.290 1.748 sum 7.545 -13.830 -0.090 15.755 Atomic orbital electron populations 1.21786 0.96067 1.02045 1.00791 1.22067 0.95973 0.92490 1.05941 1.22824 0.93310 0.94856 0.85387 0.93038 1.86459 1.37509 1.64075 1.39338 1.23928 0.78497 0.74863 0.90895 1.90596 1.56153 1.57886 1.36601 1.20026 0.95872 0.99461 0.93214 1.19437 0.93421 0.97146 1.08408 1.20891 0.91890 0.98315 0.97691 1.20891 0.97314 0.97104 1.09278 1.21021 0.97160 0.95329 0.96829 1.21127 0.93505 1.01412 1.11352 1.17708 0.92361 0.92799 0.88849 1.19356 0.98349 0.91757 1.40686 0.93576 1.26917 0.97825 0.98533 0.93729 1.69784 1.34227 1.10353 1.33631 0.85441 0.77893 0.77284 0.80132 1.18881 1.20305 1.17092 1.21373 0.93020 0.88871 1.05769 0.83255 1.21912 1.04094 1.01978 0.91597 1.24479 0.80859 0.93647 0.71682 1.90875 1.57727 1.48478 1.45435 1.86442 1.25286 1.31655 1.83593 1.23462 1.02927 0.78195 1.01671 0.94445 0.95242 0.89937 0.88321 0.86474 0.85202 0.89261 0.85184 0.84870 0.85664 0.89085 0.89888 0.87044 0.88606 0.93101 0.93270 0.83812 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 8.57 71.98 0.62 -3.36 16 2 C -0.13 -2.67 5.43 30.60 0.17 -2.50 16 3 C 0.09 2.76 1.37 30.60 0.04 2.80 16 4 H 0.05 1.99 7.11 -2.39 -0.02 1.97 16 5 O -0.36 -13.42 8.73 -45.52 -0.40 -13.82 16 6 C 0.47 21.00 6.03 71.23 0.43 21.43 16 7 O -0.52 -26.45 13.17 21.97 0.29 -26.16 16 8 C -0.05 -2.07 5.31 29.10 0.15 -1.92 16 9 C -0.18 -8.72 4.43 -19.41 -0.09 -8.80 16 10 C -0.07 -2.86 9.66 22.22 0.21 -2.65 16 11 C -0.23 -8.97 10.05 22.46 0.23 -8.75 16 12 C -0.09 -3.69 10.02 22.22 0.22 -3.47 16 13 C -0.25 -13.01 7.17 22.73 0.16 -12.85 16 14 C 0.09 4.67 5.10 -21.29 -0.11 4.56 16 15 C -0.47 -28.66 8.55 23.46 0.20 -28.46 16 16 H 0.05 3.14 7.00 -2.91 -0.02 3.12 16 17 C 0.04 2.52 5.41 85.26 0.46 2.98 16 18 N -0.85 -50.85 13.93 21.83 0.30 -50.54 16 19 Si 0.97 45.78 24.52 68.60 1.68 47.46 16 20 H -0.26 -11.92 6.71 99.48 0.67 -11.25 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.25 -11.69 6.86 99.48 0.68 -11.00 16 23 C -0.07 -1.66 2.64 -11.54 -0.03 -1.69 16 24 H 0.15 2.51 8.14 -2.38 -0.02 2.49 16 25 C -0.14 -2.08 8.78 71.98 0.63 -1.44 16 26 C 0.45 14.66 7.11 71.23 0.51 15.17 16 27 O -0.54 -24.50 15.03 27.90 0.42 -24.08 16 28 O -0.35 -9.53 10.47 -51.43 -0.54 -10.07 16 29 C 0.03 0.76 10.56 113.37 1.20 1.96 16 30 H 0.04 1.18 7.80 -2.39 -0.02 1.16 16 31 H 0.03 0.92 6.06 -2.39 -0.01 0.91 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.12 1.62 6.17 -2.39 -0.01 1.61 16 35 H 0.13 4.26 8.05 -2.39 -0.02 4.24 16 36 H 0.09 4.16 7.13 -2.39 -0.02 4.15 16 37 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.09 4.69 4.77 -2.91 -0.01 4.68 16 41 H 0.29 15.53 8.30 -92.72 -0.77 14.76 16 42 H 0.11 0.95 6.32 -2.39 -0.02 0.94 16 43 H 0.10 1.13 8.11 -2.38 -0.02 1.11 16 44 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 46 H 0.14 2.18 8.14 -2.38 -0.02 2.17 16 47 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 Total: -1.00 -82.47 380.68 7.68 -74.79 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.91 Total: 29.40 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 5.01 Total: -26.98 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.30 Total: -50.54 kcal Atomic # 8 Polarization: -73.90 SS G_CDS: -0.23 Total: -74.13 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.68 Total: 47.46 kcal Total: -82.47 7.68 -74.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836113442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.149 kcal (2) G-P(sol) polarization free energy of solvation -82.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.83 seconds