Wall clock time and date at job start Wed Apr 1 2020 00:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86803 * 119.99689 * 2 1 4 4 H 1.48507 * 109.46806 * 269.99863 * 3 2 1 5 5 H 1.48504 * 109.47291 * 29.99766 * 3 2 1 6 6 H 1.48497 * 109.47326 * 150.00127 * 3 2 1 7 7 C 1.38653 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99697 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99605 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99959 * 185.05668 * 9 7 2 11 11 C 1.38881 * 120.06486 * 354.46984 * 10 9 7 12 12 C 1.38102 * 119.93141 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.06695 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.93405 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.47022 * 89.99393 * 14 13 12 16 16 C 1.34770 * 119.99715 * 180.02562 * 15 14 13 17 17 O 1.21592 * 120.00144 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99843 * 180.02562 * 16 15 14 19 19 C 1.46510 * 119.99818 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.46670 * 180.02562 * 19 18 16 21 21 H 1.08999 * 109.47719 * 305.00151 * 20 19 18 22 22 O 1.42902 * 109.47173 * 65.00210 * 20 19 18 23 23 C 1.53006 * 109.46859 * 185.00129 * 20 19 18 24 24 C 1.53774 * 113.61235 * 80.86554 * 23 20 19 25 25 C 1.54050 * 86.98418 * 140.01956 * 24 23 20 26 26 C 1.53778 * 87.07875 * 334.56631 * 25 24 23 27 27 C 1.38306 * 120.13776 * 0.24468 * 13 12 11 28 28 C 1.38097 * 120.06910 * 359.45854 * 27 13 12 29 29 H 0.97002 * 119.99889 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03932 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96780 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.46433 * 330.00042 * 14 13 12 33 33 H 1.08998 * 109.47134 * 210.00069 * 14 13 12 34 34 H 0.96992 * 120.00022 * 0.02562 * 15 14 13 35 35 H 0.96998 * 120.00137 * 0.02562 * 18 16 15 36 36 H 1.08997 * 109.46613 * 60.00489 * 19 18 16 37 37 H 1.08998 * 109.46844 * 300.00210 * 19 18 16 38 38 H 0.96702 * 114.00009 * 59.99721 * 22 20 19 39 39 H 1.08998 * 112.84937 * 309.66973 * 23 20 19 40 40 H 1.09004 * 113.61420 * 254.61227 * 24 23 20 41 41 H 1.08995 * 113.61782 * 25.51316 * 24 23 20 42 42 H 1.09002 * 113.61992 * 220.01517 * 25 24 23 43 43 H 1.09003 * 113.69030 * 89.12549 * 25 24 23 44 44 H 1.08996 * 113.61250 * 270.88012 * 26 25 24 45 45 H 1.09003 * 113.61639 * 139.97355 * 26 25 24 46 46 H 1.08006 * 119.96122 * 179.70203 * 27 13 12 47 47 H 1.07999 * 120.03339 * 180.26834 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4002 5 1 1.4469 2.6528 0.7000 6 1 3.5471 1.4404 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0701 -3.5045 0.1087 11 6 3.4573 -3.4393 0.0952 12 6 4.2026 -4.5968 0.2038 13 6 3.5689 -5.8201 0.3253 14 6 4.3852 -7.0814 0.4431 15 7 4.6569 -7.3572 1.8560 16 6 5.3763 -8.4422 2.2046 17 8 5.8003 -9.1920 1.3463 18 7 5.6258 -8.6962 3.5045 19 6 6.4084 -9.8754 3.8833 20 6 6.5438 -9.9297 5.4064 21 1 6.9676 -8.9926 5.7672 22 8 5.2554 -10.1267 5.9924 23 6 7.4637 -11.0887 5.7955 24 6 8.9599 -10.7569 5.6688 25 6 9.1613 -11.5397 6.9802 26 6 7.6965 -11.2082 7.3109 27 6 2.1876 -5.8888 0.3334 28 6 1.4368 -4.7343 0.2314 29 1 -0.4850 0.8401 0.0004 30 1 3.9528 -2.4844 -0.0009 31 1 5.2814 -4.5468 0.1938 32 1 5.3275 -6.9554 -0.0902 33 1 3.8313 -7.9144 0.0102 34 1 4.3191 -6.7589 2.5406 35 1 5.2873 -8.0982 4.1891 36 1 7.3987 -9.8145 3.4321 37 1 5.9034 -10.7749 3.5314 38 1 4.8181 -10.9435 5.7154 39 1 7.1834 -12.0292 5.3213 40 1 9.4379 -11.2189 4.8050 41 1 9.1802 -9.6931 5.7570 42 1 9.8777 -11.0772 7.6592 43 1 9.3454 -12.6037 6.8313 44 1 7.5721 -10.2676 7.8474 45 1 7.1553 -12.0345 7.7720 46 1 1.6957 -6.8461 0.4236 47 1 0.3582 -4.7883 0.2421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838228044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:36 Heat of formation + Delta-G solvation = -71.493679 kcal Electronic energy + Delta-G solvation = -27111.029908 eV Core-core repulsion = 23066.901887 eV Total energy + Delta-G solvation = -4044.128022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.27919 -39.59129 -39.04067 -37.05088 -36.71751 -34.49651 -34.26107 -32.36928 -30.50627 -30.25237 -29.29514 -26.23528 -25.98685 -25.37682 -24.29023 -22.28659 -22.04960 -20.97994 -20.61343 -20.00363 -18.50355 -18.06371 -17.40481 -17.01712 -16.54455 -15.93845 -15.72209 -15.29647 -14.98393 -14.66483 -14.60862 -14.37287 -14.28645 -13.86302 -13.70493 -13.50923 -13.38115 -13.06395 -12.90424 -12.78321 -12.58237 -12.38018 -12.05483 -11.82785 -11.67323 -11.39983 -11.37532 -10.96989 -10.96498 -10.78950 -10.72526 -10.68120 -10.49357 -10.32858 -10.04444 -9.42874 -9.32170 -8.91479 -8.74925 -8.28135 -7.33043 -6.53117 -4.12031 2.02800 2.13419 2.81562 3.08597 3.09330 3.14077 3.25149 3.76193 3.90198 4.06737 4.13067 4.31305 4.32381 4.39732 4.56996 4.61214 4.74151 4.88554 5.01885 5.16423 5.20731 5.24590 5.27216 5.30239 5.40324 5.45313 5.47175 5.52404 5.57711 5.67513 5.77792 5.82667 5.93633 5.99959 6.12444 6.33478 6.35749 6.58403 6.62354 6.80596 6.89701 6.99782 7.15986 7.18606 7.28168 7.35288 7.71771 7.91566 8.05834 8.63457 8.92224 9.60486 10.64372 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019113 B = 0.001705 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.602464 B =16421.118666 C =16984.070654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.214 4.214 14 C 0.198 3.802 15 N -0.737 5.737 16 C 0.700 3.300 17 O -0.600 6.600 18 N -0.746 5.746 19 C 0.110 3.890 20 C 0.106 3.894 21 H 0.105 0.895 22 O -0.556 6.556 23 C -0.143 4.143 24 C -0.135 4.135 25 C -0.145 4.145 26 C -0.125 4.125 27 C -0.054 4.054 28 C -0.195 4.195 29 H 0.271 0.729 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.399 0.601 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.377 0.623 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.113 0.887 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.471 -19.769 12.549 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.216 4.216 14 C 0.075 3.925 15 N -0.392 5.392 16 C 0.400 3.600 17 O -0.479 6.479 18 N -0.403 5.403 19 C -0.015 4.015 20 C 0.046 3.954 21 H 0.122 0.878 22 O -0.361 6.361 23 C -0.162 4.162 24 C -0.172 4.172 25 C -0.183 4.183 26 C -0.162 4.162 27 C -0.072 4.072 28 C -0.215 4.215 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.232 0.768 35 H 0.234 0.766 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.224 0.776 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.131 0.869 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.559 -19.662 11.983 27.242 hybrid contribution 0.079 0.891 0.263 0.932 sum 14.638 -18.771 12.246 26.769 Atomic orbital electron populations 1.70038 1.05999 1.27853 1.45455 1.25318 0.95861 0.98925 0.96358 0.85696 0.78925 0.79932 0.78799 1.19795 1.20186 1.19148 1.21354 0.91871 0.80731 1.53006 0.88921 1.83979 1.34503 1.11568 1.77569 1.19441 0.90321 0.88050 0.91611 1.21161 0.93774 0.98953 1.11780 1.20647 0.98385 0.91619 0.96239 1.19228 0.93566 0.93651 1.15115 1.19825 0.98228 0.94569 0.79854 1.45502 1.57286 1.26792 1.09638 1.16030 0.79375 0.81910 0.82653 1.90904 1.57704 1.50114 1.49181 1.45007 1.59495 1.29492 1.06266 1.21852 0.96510 0.88284 0.94883 1.22232 0.83802 0.98659 0.90691 0.87757 1.86600 1.31263 1.46612 1.71626 1.23223 0.95800 0.99180 0.98045 1.22946 0.94940 1.00982 0.98370 1.22890 0.97212 1.00497 0.97656 1.22793 0.96159 1.02254 0.95026 1.20542 0.92779 0.96827 0.97089 1.20217 0.99677 0.90246 1.11338 0.91886 0.85431 0.87395 0.91810 0.91769 0.76838 0.76645 0.90846 0.91564 0.77586 0.88681 0.91070 0.89777 0.91352 0.90192 0.89798 0.91420 0.86942 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.17 -4.82 9.76 0.04 0.00 -4.82 16 10 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 11 C -0.24 -4.92 9.17 -39.39 -0.36 -5.28 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.45 5.25 -104.57 -0.55 -4.00 16 14 C 0.20 2.84 5.80 -5.19 -0.03 2.81 16 15 N -0.74 -9.50 5.55 -66.41 -0.37 -9.86 16 16 C 0.70 9.58 8.57 -86.92 -0.74 8.84 16 17 O -0.60 -10.50 16.34 5.28 0.09 -10.41 16 18 N -0.75 -7.43 5.51 -65.22 -0.36 -7.79 16 19 C 0.11 0.91 5.30 -4.04 -0.02 0.89 16 20 C 0.11 0.65 2.75 -26.73 -0.07 0.58 16 21 H 0.10 0.66 7.98 -51.93 -0.41 0.25 16 22 O -0.56 -3.84 13.11 -35.23 -0.46 -4.30 16 23 C -0.14 -0.74 3.31 -89.81 -0.30 -1.03 16 24 C -0.13 -0.69 7.59 -25.78 -0.20 -0.89 16 25 C -0.15 -0.70 8.09 -25.78 -0.21 -0.91 16 26 C -0.12 -0.65 7.47 -25.92 -0.19 -0.84 16 27 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 28 C -0.20 -3.94 9.99 -39.40 -0.39 -4.34 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.13 2.66 5.64 -52.48 -0.30 2.37 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.40 4.55 8.48 -40.82 -0.35 4.21 16 35 H 0.40 3.33 8.49 -40.82 -0.35 2.98 16 36 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.38 1.61 9.05 45.56 0.41 2.02 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.43 7.99 -51.93 -0.41 0.01 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -32.69 395.62 -9.60 -42.29 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.30 Total: 10.51 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.90 Total: -12.68 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.03 Total: -41.55 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.38 Total: -19.53 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.69 -9.60 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838228044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.201 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds