Wall clock time and date at job start Wed Apr 1 2020 00:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86803 * 119.99689 * 2 1 4 4 H 1.48507 * 109.46806 * 269.99863 * 3 2 1 5 5 H 1.48504 * 109.47291 * 29.99766 * 3 2 1 6 6 H 1.48497 * 109.47326 * 150.00127 * 3 2 1 7 7 C 1.38653 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99697 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99605 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99959 * 185.05668 * 9 7 2 11 11 C 1.38881 * 120.06486 * 354.46984 * 10 9 7 12 12 C 1.38102 * 119.93141 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.06695 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.93405 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.47022 * 89.99393 * 14 13 12 16 16 C 1.34770 * 119.99715 * 180.02562 * 15 14 13 17 17 O 1.21592 * 120.00144 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99843 * 180.02562 * 16 15 14 19 19 C 1.46510 * 119.99818 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.46670 * 180.02562 * 19 18 16 21 21 H 1.08999 * 109.47719 * 305.00151 * 20 19 18 22 22 O 1.42902 * 109.47173 * 65.00210 * 20 19 18 23 23 C 1.53006 * 109.46859 * 185.00129 * 20 19 18 24 24 C 1.53774 * 113.61235 * 80.86554 * 23 20 19 25 25 C 1.54050 * 86.98418 * 140.01956 * 24 23 20 26 26 C 1.53778 * 87.07875 * 334.56631 * 25 24 23 27 27 C 1.38306 * 120.13776 * 0.24468 * 13 12 11 28 28 C 1.38097 * 120.06910 * 359.45854 * 27 13 12 29 29 H 0.97002 * 119.99889 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03932 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96780 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.46433 * 330.00042 * 14 13 12 33 33 H 1.08998 * 109.47134 * 210.00069 * 14 13 12 34 34 H 0.96992 * 120.00022 * 0.02562 * 15 14 13 35 35 H 0.96998 * 120.00137 * 0.02562 * 18 16 15 36 36 H 1.08997 * 109.46613 * 60.00489 * 19 18 16 37 37 H 1.08998 * 109.46844 * 300.00210 * 19 18 16 38 38 H 0.96702 * 114.00009 * 59.99721 * 22 20 19 39 39 H 1.08998 * 112.84937 * 309.66973 * 23 20 19 40 40 H 1.09004 * 113.61420 * 254.61227 * 24 23 20 41 41 H 1.08995 * 113.61782 * 25.51316 * 24 23 20 42 42 H 1.09002 * 113.61992 * 220.01517 * 25 24 23 43 43 H 1.09003 * 113.69030 * 89.12549 * 25 24 23 44 44 H 1.08996 * 113.61250 * 270.88012 * 26 25 24 45 45 H 1.09003 * 113.61639 * 139.97355 * 26 25 24 46 46 H 1.08006 * 119.96122 * 179.70203 * 27 13 12 47 47 H 1.07999 * 120.03339 * 180.26834 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4002 5 1 1.4469 2.6528 0.7000 6 1 3.5471 1.4404 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0701 -3.5045 0.1087 11 6 3.4573 -3.4393 0.0952 12 6 4.2026 -4.5968 0.2038 13 6 3.5689 -5.8201 0.3253 14 6 4.3852 -7.0814 0.4431 15 7 4.6569 -7.3572 1.8560 16 6 5.3763 -8.4422 2.2046 17 8 5.8003 -9.1920 1.3463 18 7 5.6258 -8.6962 3.5045 19 6 6.4084 -9.8754 3.8833 20 6 6.5438 -9.9297 5.4064 21 1 6.9676 -8.9926 5.7672 22 8 5.2554 -10.1267 5.9924 23 6 7.4637 -11.0887 5.7955 24 6 8.9599 -10.7569 5.6688 25 6 9.1613 -11.5397 6.9802 26 6 7.6965 -11.2082 7.3109 27 6 2.1876 -5.8888 0.3334 28 6 1.4368 -4.7343 0.2314 29 1 -0.4850 0.8401 0.0004 30 1 3.9528 -2.4844 -0.0009 31 1 5.2814 -4.5468 0.1938 32 1 5.3275 -6.9554 -0.0902 33 1 3.8313 -7.9144 0.0102 34 1 4.3191 -6.7589 2.5406 35 1 5.2873 -8.0982 4.1891 36 1 7.3987 -9.8145 3.4321 37 1 5.9034 -10.7749 3.5314 38 1 4.8181 -10.9435 5.7154 39 1 7.1834 -12.0292 5.3213 40 1 9.4379 -11.2189 4.8050 41 1 9.1802 -9.6931 5.7570 42 1 9.8777 -11.0772 7.6592 43 1 9.3454 -12.6037 6.8313 44 1 7.5721 -10.2676 7.8474 45 1 7.1553 -12.0345 7.7720 46 1 1.6957 -6.8461 0.4236 47 1 0.3582 -4.7883 0.2421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838228044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:35 Heat of formation + Delta-G solvation = -95.564236 kcal Electronic energy + Delta-G solvation = -27112.073686 eV Core-core repulsion = 23066.901887 eV Total energy + Delta-G solvation = -4045.171799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.21707 -40.74825 -40.15192 -38.54338 -37.39817 -35.63647 -35.25622 -34.26696 -31.85644 -31.60780 -30.24702 -27.69251 -26.69656 -26.38437 -25.36731 -23.64300 -22.84236 -22.21129 -21.90483 -20.45535 -19.88897 -19.48853 -18.83399 -17.98378 -17.29091 -16.84593 -16.52592 -16.39121 -16.29156 -16.04177 -15.74661 -15.55199 -15.43017 -15.21364 -15.05058 -14.75852 -14.38447 -14.27815 -13.97721 -13.78322 -13.54085 -13.30634 -13.15152 -13.02579 -12.80651 -12.55324 -12.36528 -12.26729 -12.22139 -12.11636 -11.88788 -11.45186 -11.35011 -11.20036 -11.13188 -10.81142 -10.61812 -10.36397 -9.82019 -9.72164 -9.01885 -8.48192 -6.16488 0.52922 0.58002 1.35977 1.43974 1.53017 1.82722 2.17202 2.17959 2.80283 3.12070 3.28801 3.48210 3.48904 3.59901 3.77085 3.87425 3.89280 3.97625 4.03834 4.14385 4.17798 4.21183 4.40080 4.47423 4.57163 4.69016 4.74352 4.79570 4.81731 4.88635 4.90320 5.04399 5.05831 5.11298 5.14622 5.14713 5.26940 5.36479 5.46607 5.51719 5.53741 5.60923 5.69151 5.75946 6.01417 6.01870 6.16554 6.79464 6.96584 7.10160 7.59707 7.75767 8.74529 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019113 B = 0.001705 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.602464 B =16421.118666 C =16984.070654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.244 4.244 12 C -0.045 4.045 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.699 3.301 17 O -0.638 6.638 18 N -0.732 5.732 19 C 0.110 3.890 20 C 0.119 3.881 21 H 0.105 0.895 22 O -0.568 6.568 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.043 4.043 28 C -0.204 4.204 29 H 0.273 0.727 30 H 0.121 0.879 31 H 0.139 0.861 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.407 0.593 35 H 0.409 0.591 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.388 0.612 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.147 0.853 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.777 -21.527 13.559 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.263 4.263 12 C -0.063 4.063 13 C -0.183 4.183 14 C 0.081 3.919 15 N -0.387 5.387 16 C 0.399 3.601 17 O -0.520 6.520 18 N -0.388 5.388 19 C -0.014 4.014 20 C 0.059 3.941 21 H 0.122 0.878 22 O -0.375 6.375 23 C -0.158 4.158 24 C -0.175 4.175 25 C -0.181 4.181 26 C -0.162 4.162 27 C -0.061 4.061 28 C -0.224 4.224 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.157 0.843 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.242 0.758 35 H 0.245 0.755 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.237 0.763 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.165 0.835 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 16.892 -21.474 13.038 30.274 hybrid contribution -0.504 1.027 0.001 1.144 sum 16.388 -20.447 13.040 29.269 Atomic orbital electron populations 1.70181 1.08016 1.28844 1.48572 1.26579 0.96827 1.02739 0.95789 0.84597 0.77859 0.74614 0.79224 1.18905 1.19669 1.17569 1.21834 0.92585 0.81335 1.53247 0.87890 1.83948 1.36068 1.12684 1.80843 1.19995 0.91634 0.87952 0.93267 1.21247 0.93003 1.00068 1.11992 1.20939 0.99806 0.90705 0.94872 1.19496 0.93455 0.94129 1.11185 1.19711 0.98041 0.93315 0.80869 1.45250 1.57284 1.26933 1.09208 1.16132 0.79134 0.81529 0.83319 1.90886 1.59241 1.51371 1.50528 1.44941 1.58767 1.29890 1.05233 1.21964 0.95794 0.87388 0.96284 1.22110 0.83865 0.99145 0.88974 0.87761 1.86578 1.31563 1.47589 1.71746 1.23199 0.95510 0.99005 0.98067 1.22976 0.94907 1.01079 0.98563 1.22899 0.96996 1.00784 0.97432 1.22778 0.96484 1.02085 0.94885 1.20883 0.93073 0.96981 0.95194 1.20448 1.00092 0.90389 1.11445 0.91814 0.86161 0.84332 0.91447 0.91222 0.75770 0.75454 0.91435 0.91862 0.76271 0.88052 0.91103 0.89786 0.91195 0.89700 0.90330 0.91207 0.83533 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.44 13.67 21.61 0.30 -55.15 16 2 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 3 Si 1.02 41.93 29.55 68.60 2.03 43.96 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.41 -23.51 9.49 67.92 0.64 -22.87 16 8 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 9 O -0.23 -13.44 9.76 -22.76 -0.22 -13.67 16 10 C 0.12 5.84 6.65 22.58 0.15 5.99 16 11 C -0.24 -10.05 9.17 22.39 0.21 -9.84 16 12 C -0.04 -1.43 9.69 22.25 0.22 -1.22 16 13 C -0.18 -5.25 5.25 -19.83 -0.10 -5.36 16 14 C 0.20 5.08 5.80 85.63 0.50 5.58 16 15 N -0.73 -16.32 5.55 -482.29 -2.68 -19.00 16 16 C 0.70 17.21 8.57 179.06 1.53 18.74 16 17 O -0.64 -20.89 16.34 -4.00 -0.07 -20.96 16 18 N -0.73 -12.71 5.51 -478.52 -2.64 -15.34 16 19 C 0.11 1.60 5.30 86.38 0.46 2.05 16 20 C 0.12 1.21 2.75 30.60 0.08 1.29 16 21 H 0.10 1.10 7.98 -2.39 -0.02 1.08 16 22 O -0.57 -6.55 13.11 -148.98 -1.95 -8.50 16 23 C -0.14 -1.16 3.31 -10.27 -0.03 -1.19 16 24 C -0.14 -1.18 7.59 31.21 0.24 -0.95 16 25 C -0.14 -1.14 8.09 31.21 0.25 -0.89 16 26 C -0.12 -1.08 7.47 31.12 0.23 -0.85 16 27 C -0.04 -1.33 9.69 22.25 0.22 -1.12 16 28 C -0.20 -8.23 9.99 22.39 0.22 -8.01 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 31 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 32 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 33 H 0.07 1.74 8.08 -2.39 -0.02 1.73 16 34 H 0.41 7.82 8.48 -92.71 -0.79 7.03 16 35 H 0.41 5.64 8.49 -92.71 -0.79 4.85 16 36 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 38 H 0.39 2.44 9.05 -74.06 -0.67 1.77 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 0.72 7.99 -2.39 -0.02 0.70 16 42 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 45 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 47 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -74.37 395.62 -1.18 -75.55 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -1.23 Total: 32.46 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.28 Total: -19.35 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -5.02 Total: -89.49 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -2.24 Total: -43.13 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -74.37 -1.18 -75.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838228044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.015 kcal (2) G-P(sol) polarization free energy of solvation -74.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds