Wall clock time and date at job start Tue Mar 31 2020 22:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00291 * 2 1 4 4 H 1.48499 * 109.46979 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47082 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46568 * 120.00160 * 3 2 1 7 7 C 1.37883 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00131 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99774 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47166 * 185.82331 * 9 7 2 11 11 C 1.46911 * 111.00044 * 52.86494 * 10 9 7 12 12 C 1.53234 * 109.36924 * 172.71526 * 11 10 9 13 13 N 1.47121 * 108.49829 * 53.88416 * 12 11 10 14 14 C 1.34773 * 120.89715 * 128.93632 * 13 12 11 15 15 O 1.21277 * 120.00045 * 208.43010 * 14 13 12 16 16 C 1.50707 * 119.99968 * 28.43442 * 14 13 12 17 17 F 1.39895 * 109.47115 * 179.97438 * 16 14 13 18 18 F 1.39891 * 109.47160 * 300.00151 * 16 14 13 19 19 F 1.39903 * 109.46734 * 59.99894 * 16 14 13 20 20 C 1.46944 * 118.20484 * 308.94497 * 13 12 11 21 21 C 1.52862 * 109.46563 * 291.20040 * 20 13 12 22 22 C 1.53026 * 109.46757 * 299.60589 * 21 20 13 23 23 C 1.52999 * 109.44936 * 300.14825 * 22 21 20 24 24 C 1.52989 * 109.49302 * 60.06697 * 23 22 21 25 25 C 1.52843 * 109.49851 * 170.86591 * 20 13 12 26 26 C 1.46920 * 111.00308 * 288.55355 * 10 9 7 27 27 H 0.97002 * 119.99635 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47367 * 65.81998 * 9 7 2 29 29 H 1.09005 * 109.47006 * 305.82204 * 9 7 2 30 30 H 1.08994 * 109.48405 * 292.68435 * 11 10 9 31 31 H 1.08999 * 109.48324 * 52.72408 * 11 10 9 32 32 H 1.09001 * 109.63411 * 173.58737 * 12 11 10 33 33 H 1.08997 * 109.63729 * 294.18383 * 12 11 10 34 34 H 1.09003 * 109.46903 * 179.61067 * 21 20 13 35 35 H 1.09004 * 109.47822 * 59.60606 * 21 20 13 36 36 H 1.08997 * 109.47817 * 180.15141 * 22 21 20 37 37 H 1.08996 * 109.47319 * 60.13666 * 22 21 20 38 38 H 1.09000 * 109.46263 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.46473 * 300.06178 * 23 22 21 40 40 H 1.09002 * 109.47075 * 59.95584 * 24 23 22 41 41 H 1.09001 * 109.47109 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.46877 * 180.40078 * 25 20 13 43 43 H 1.08994 * 109.46731 * 300.39803 * 25 20 13 44 44 H 1.09007 * 109.49536 * 67.11471 * 26 10 9 45 45 H 1.09002 * 109.49728 * 307.02611 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.1992 -3.6123 0.1384 11 6 3.0707 -3.4178 1.3050 12 6 3.9165 -4.6768 1.5231 13 7 4.6186 -4.9904 0.2688 14 6 5.9491 -5.2050 0.2555 15 8 6.5936 -4.9553 -0.7411 16 6 6.6359 -5.7553 1.4789 17 9 8.0048 -5.8905 1.2240 18 9 6.4454 -4.8805 2.5537 19 9 6.0949 -7.0063 1.7942 20 6 3.8301 -5.0632 -0.9690 21 6 2.9151 -6.2866 -0.9189 22 6 3.7639 -7.5533 -0.7891 23 6 4.7025 -7.6631 -1.9924 24 6 5.6192 -6.4391 -2.0382 25 6 4.7717 -5.1717 -2.1681 26 6 2.9850 -3.7924 -1.0898 27 1 -0.4850 0.8401 0.0004 28 1 0.7051 -2.6027 -0.9394 29 1 0.5481 -2.5136 0.8313 30 1 3.7265 -2.5648 1.1308 31 1 2.4597 -3.2323 2.1884 32 1 4.6438 -4.4968 2.3147 33 1 3.2695 -5.5095 1.7986 34 1 2.3252 -6.3368 -1.8341 35 1 2.2480 -6.2067 -0.0605 36 1 3.1117 -8.4260 -0.7561 37 1 4.3521 -7.5042 0.1272 38 1 5.3069 -8.5655 -1.9003 39 1 4.1142 -7.7109 -2.9088 40 1 6.2070 -6.3909 -1.1215 41 1 6.2880 -6.5180 -2.8952 42 1 4.1865 -5.2185 -3.0865 43 1 5.4246 -4.2994 -2.1973 44 1 3.6395 -2.9325 -1.2324 45 1 2.3118 -3.8830 -1.9424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847090975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:54 Heat of formation + Delta-G solvation = -126.727167 kcal Electronic energy + Delta-G solvation = -32588.633349 eV Core-core repulsion = 28000.253483 eV Total energy + Delta-G solvation = -4588.379866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.47556 -48.00998 -47.91055 -41.65902 -38.31815 -36.60131 -34.65982 -32.48801 -31.60811 -30.51324 -29.17255 -27.32386 -26.43596 -24.71060 -23.16486 -22.62201 -22.14016 -21.32457 -19.98977 -19.50451 -18.90200 -18.55276 -17.77287 -16.57418 -16.36338 -15.64999 -15.39551 -15.12638 -14.86776 -14.81109 -14.63476 -14.46207 -14.31467 -14.25741 -14.14083 -14.03532 -13.86750 -13.56304 -13.36313 -12.98468 -12.54534 -12.40138 -12.04245 -11.97944 -11.87743 -11.44503 -11.28718 -11.14134 -10.90094 -10.81889 -10.77329 -10.48371 -10.33535 -10.10674 -9.96331 -9.86959 -9.73026 -9.47632 -8.52996 -8.46010 -7.35111 -6.11925 -4.21543 1.58606 1.90163 2.94270 3.23544 3.29051 3.31708 3.47697 3.90020 4.01176 4.33690 4.63550 4.79674 4.86784 4.93526 5.17663 5.19537 5.27235 5.31921 5.37827 5.54899 5.61362 5.65694 5.66631 5.77444 5.82612 5.90996 6.02009 6.21291 6.21542 6.23474 6.31708 6.34273 6.45454 6.49630 6.53102 6.58813 6.65762 7.07392 7.12368 7.41468 7.41702 7.78721 7.85563 8.08430 8.17194 8.87648 9.46273 10.93251 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.004508 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.199439 B = 6209.663260 C = 6961.659744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.056 0.944 9 C 0.189 3.811 10 N -0.537 5.537 11 C 0.055 3.945 12 C 0.085 3.915 13 N -0.576 5.576 14 C 0.470 3.530 15 O -0.441 6.441 16 C 0.442 3.558 17 F -0.160 7.160 18 F -0.167 7.167 19 F -0.167 7.167 20 C 0.183 3.817 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.150 4.150 25 C -0.113 4.113 26 C 0.060 3.940 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.560 -14.898 1.231 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.064 3.936 10 N -0.261 5.261 11 C -0.074 4.074 12 C -0.037 4.037 13 N -0.309 5.309 14 C 0.251 3.749 15 O -0.314 6.314 16 C 0.383 3.617 17 F -0.141 7.141 18 F -0.148 7.148 19 F -0.148 7.148 20 C 0.100 3.900 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.161 4.161 24 C -0.187 4.187 25 C -0.151 4.151 26 C -0.069 4.069 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.445 -15.064 0.790 17.798 hybrid contribution 0.995 1.675 0.146 1.954 sum 10.440 -13.389 0.936 17.004 Atomic orbital electron populations 1.69921 1.06000 1.27085 1.49668 1.24934 0.94740 0.99130 0.94699 0.86721 0.79720 0.83289 0.78697 1.20277 1.21132 1.20218 1.21680 0.93227 0.92070 1.52361 0.92604 1.19759 0.90649 0.85212 0.97977 1.62503 1.16826 1.45388 1.01354 1.22184 0.95360 0.93883 0.95954 1.22597 0.96776 0.99804 0.84493 1.47959 1.04654 1.67123 1.11196 1.19822 0.84380 0.83264 0.87430 1.90797 1.64266 1.45101 1.31226 1.20792 0.78524 0.76953 0.85399 1.93238 1.31287 1.95600 1.93987 1.93138 1.94213 1.68948 1.58529 1.93236 1.85602 1.42432 1.93529 1.20918 0.90385 0.96611 0.82125 1.21751 0.97361 0.92298 1.03742 1.21571 0.98147 0.97852 0.98337 1.21649 0.97956 0.98122 0.98410 1.22727 0.97965 0.93296 1.04682 1.21855 0.97425 0.99731 0.96095 1.22268 0.95837 0.94183 0.94645 0.92652 0.95409 0.94318 0.93324 0.89606 0.88769 0.90252 0.90720 0.89847 0.92121 0.92383 0.92704 0.92318 0.88617 0.92328 0.91501 0.89713 0.93766 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.55 -14.36 7.78 -34.44 -0.27 -14.63 16 8 H 0.06 1.45 5.90 -52.49 -0.31 1.14 16 9 C 0.19 4.47 5.17 -4.98 -0.03 4.44 16 10 N -0.54 -10.12 4.33 -235.84 -1.02 -11.14 16 11 C 0.06 0.95 5.03 -3.70 -0.02 0.93 16 12 C 0.09 1.16 5.94 -3.58 -0.02 1.13 16 13 N -0.58 -8.13 2.02 -158.00 -0.32 -8.44 16 14 C 0.47 6.66 4.68 -10.98 -0.05 6.61 16 15 O -0.44 -6.92 10.84 5.56 0.06 -6.86 16 16 C 0.44 5.57 3.04 36.01 0.11 5.68 16 17 F -0.16 -2.09 16.92 2.25 0.04 -2.05 16 18 F -0.17 -2.05 14.53 2.25 0.03 -2.02 16 19 F -0.17 -1.96 16.45 2.25 0.04 -1.93 16 20 C 0.18 2.63 0.67 -131.68 -0.09 2.54 16 21 C -0.11 -1.45 4.60 -26.79 -0.12 -1.57 16 22 C -0.12 -1.39 5.73 -26.72 -0.15 -1.54 16 23 C -0.12 -1.40 5.92 -26.74 -0.16 -1.56 16 24 C -0.15 -1.95 4.66 -26.73 -0.12 -2.08 16 25 C -0.11 -1.58 4.20 -26.80 -0.11 -1.69 16 26 C 0.06 1.05 4.02 -3.77 -0.02 1.04 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.03 0.70 7.94 -51.93 -0.41 0.29 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.95 6.48 -51.93 -0.34 0.62 16 31 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 32 H 0.09 1.16 4.94 -51.93 -0.26 0.90 16 33 H 0.08 0.99 7.61 -51.93 -0.40 0.59 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.14 7.06 -51.93 -0.37 0.77 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.70 6.47 -51.93 -0.34 0.36 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.36 3.47 -57.87 -0.20 1.16 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.34 6.62 -51.93 -0.34 1.00 16 44 H 0.04 0.89 7.32 -51.93 -0.38 0.51 16 45 H 0.08 1.39 7.98 -51.93 -0.41 0.98 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -26.89 341.34 -7.73 -34.61 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.27 Total: 0.13 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.15 Total: 1.05 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.60 Total: -43.95 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: 0.06 Total: -6.86 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.11 Total: -5.99 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.89 -7.73 -34.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847090975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.113 kcal (2) G-P(sol) polarization free energy of solvation -26.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds