Wall clock time and date at job start Tue Mar 31 2020 22:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00291 * 2 1 4 4 H 1.48499 * 109.46979 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47082 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46568 * 120.00160 * 3 2 1 7 7 C 1.37883 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00131 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99774 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47166 * 185.82331 * 9 7 2 11 11 C 1.46911 * 111.00044 * 52.86494 * 10 9 7 12 12 C 1.53234 * 109.36924 * 172.71526 * 11 10 9 13 13 N 1.47121 * 108.49829 * 53.88416 * 12 11 10 14 14 C 1.34773 * 120.89715 * 128.93632 * 13 12 11 15 15 O 1.21277 * 120.00045 * 208.43010 * 14 13 12 16 16 C 1.50707 * 119.99968 * 28.43442 * 14 13 12 17 17 F 1.39895 * 109.47115 * 179.97438 * 16 14 13 18 18 F 1.39891 * 109.47160 * 300.00151 * 16 14 13 19 19 F 1.39903 * 109.46734 * 59.99894 * 16 14 13 20 20 C 1.46944 * 118.20484 * 308.94497 * 13 12 11 21 21 C 1.52862 * 109.46563 * 291.20040 * 20 13 12 22 22 C 1.53026 * 109.46757 * 299.60589 * 21 20 13 23 23 C 1.52999 * 109.44936 * 300.14825 * 22 21 20 24 24 C 1.52989 * 109.49302 * 60.06697 * 23 22 21 25 25 C 1.52843 * 109.49851 * 170.86591 * 20 13 12 26 26 C 1.46920 * 111.00308 * 288.55355 * 10 9 7 27 27 H 0.97002 * 119.99635 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47367 * 65.81998 * 9 7 2 29 29 H 1.09005 * 109.47006 * 305.82204 * 9 7 2 30 30 H 1.08994 * 109.48405 * 292.68435 * 11 10 9 31 31 H 1.08999 * 109.48324 * 52.72408 * 11 10 9 32 32 H 1.09001 * 109.63411 * 173.58737 * 12 11 10 33 33 H 1.08997 * 109.63729 * 294.18383 * 12 11 10 34 34 H 1.09003 * 109.46903 * 179.61067 * 21 20 13 35 35 H 1.09004 * 109.47822 * 59.60606 * 21 20 13 36 36 H 1.08997 * 109.47817 * 180.15141 * 22 21 20 37 37 H 1.08996 * 109.47319 * 60.13666 * 22 21 20 38 38 H 1.09000 * 109.46263 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.46473 * 300.06178 * 23 22 21 40 40 H 1.09002 * 109.47075 * 59.95584 * 24 23 22 41 41 H 1.09001 * 109.47109 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.46877 * 180.40078 * 25 20 13 43 43 H 1.08994 * 109.46731 * 300.39803 * 25 20 13 44 44 H 1.09007 * 109.49536 * 67.11471 * 26 10 9 45 45 H 1.09002 * 109.49728 * 307.02611 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.1992 -3.6123 0.1384 11 6 3.0707 -3.4178 1.3050 12 6 3.9165 -4.6768 1.5231 13 7 4.6186 -4.9904 0.2688 14 6 5.9491 -5.2050 0.2555 15 8 6.5936 -4.9553 -0.7411 16 6 6.6359 -5.7553 1.4789 17 9 8.0048 -5.8905 1.2240 18 9 6.4454 -4.8805 2.5537 19 9 6.0949 -7.0063 1.7942 20 6 3.8301 -5.0632 -0.9690 21 6 2.9151 -6.2866 -0.9189 22 6 3.7639 -7.5533 -0.7891 23 6 4.7025 -7.6631 -1.9924 24 6 5.6192 -6.4391 -2.0382 25 6 4.7717 -5.1717 -2.1681 26 6 2.9850 -3.7924 -1.0898 27 1 -0.4850 0.8401 0.0004 28 1 0.7051 -2.6027 -0.9394 29 1 0.5481 -2.5136 0.8313 30 1 3.7265 -2.5648 1.1308 31 1 2.4597 -3.2323 2.1884 32 1 4.6438 -4.4968 2.3147 33 1 3.2695 -5.5095 1.7986 34 1 2.3252 -6.3368 -1.8341 35 1 2.2480 -6.2067 -0.0605 36 1 3.1117 -8.4260 -0.7561 37 1 4.3521 -7.5042 0.1272 38 1 5.3069 -8.5655 -1.9003 39 1 4.1142 -7.7109 -2.9088 40 1 6.2070 -6.3909 -1.1215 41 1 6.2880 -6.5180 -2.8952 42 1 4.1865 -5.2185 -3.0865 43 1 5.4246 -4.2994 -2.1973 44 1 3.6395 -2.9325 -1.2324 45 1 2.3118 -3.8830 -1.9424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847090975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:53 Heat of formation + Delta-G solvation = -141.628148 kcal Electronic energy + Delta-G solvation = -32589.279504 eV Core-core repulsion = 28000.253483 eV Total energy + Delta-G solvation = -4589.026021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.48564 -49.02208 -48.90381 -42.82281 -39.63901 -37.82631 -36.07568 -34.40946 -32.79372 -31.56505 -30.58182 -28.74072 -27.81874 -26.26803 -24.59474 -23.78772 -23.37622 -22.53949 -21.27776 -20.67001 -19.92395 -19.58075 -19.09308 -18.31527 -17.62424 -16.89206 -16.60492 -16.50193 -16.35552 -15.96642 -15.75528 -15.62658 -15.48874 -15.40932 -15.22305 -15.10778 -15.02918 -14.98151 -14.58886 -14.32155 -13.89032 -13.67390 -13.49699 -13.17697 -13.04961 -12.95583 -12.90253 -12.66583 -12.53432 -12.36280 -12.03471 -11.88504 -11.81320 -11.74345 -11.41157 -11.08045 -10.90207 -10.67420 -10.60511 -9.68101 -9.04686 -8.17563 -6.35955 0.46474 0.79886 1.34980 1.36005 1.43545 1.87212 2.35018 2.38662 2.85971 2.99466 3.07838 3.21818 3.63177 3.79100 3.79750 4.00327 4.16770 4.23643 4.25569 4.38955 4.45130 4.53646 4.58102 4.62631 4.75140 4.82428 4.85238 4.96095 5.04433 5.10293 5.14332 5.23167 5.26178 5.27170 5.30215 5.34214 5.45526 5.50159 5.56305 5.72938 5.91785 6.02083 6.20451 6.27413 6.42695 6.83885 7.35504 8.84446 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.004508 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.199439 B = 6209.663260 C = 6961.659744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.558 4.558 8 H 0.050 0.950 9 C 0.203 3.797 10 N -0.526 5.526 11 C 0.056 3.944 12 C 0.096 3.904 13 N -0.580 5.580 14 C 0.469 3.531 15 O -0.457 6.457 16 C 0.453 3.547 17 F -0.161 7.161 18 F -0.163 7.163 19 F -0.157 7.157 20 C 0.189 3.811 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.146 4.146 25 C -0.110 4.110 26 C 0.065 3.935 27 H 0.265 0.735 28 H 0.006 0.994 29 H 0.017 0.983 30 H 0.021 0.979 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.013 0.987 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.558 -16.508 1.670 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.597 4.597 8 H 0.069 0.931 9 C 0.076 3.924 10 N -0.249 5.249 11 C -0.073 4.073 12 C -0.026 4.026 13 N -0.313 5.313 14 C 0.251 3.749 15 O -0.332 6.332 16 C 0.395 3.605 17 F -0.142 7.142 18 F -0.144 7.144 19 F -0.138 7.138 20 C 0.106 3.894 21 C -0.146 4.146 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.183 4.183 25 C -0.148 4.148 26 C -0.065 4.065 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.104 0.896 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.031 0.969 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.463 -16.692 1.239 19.739 hybrid contribution 0.699 2.183 -0.016 2.292 sum 11.162 -14.508 1.223 18.346 Atomic orbital electron populations 1.70025 1.07281 1.27880 1.50819 1.25673 0.95491 1.02337 0.94582 0.85773 0.78561 0.79627 0.78707 1.20192 1.20580 1.19579 1.21921 0.93086 0.93178 1.51486 0.93140 1.19414 0.91038 0.86133 0.95787 1.62431 1.17077 1.42817 1.02614 1.22204 0.94968 0.95121 0.95037 1.22540 0.96919 0.98447 0.84680 1.47977 1.04868 1.67313 1.11156 1.20011 0.84133 0.82936 0.87826 1.90809 1.64571 1.45616 1.32157 1.20364 0.78264 0.77189 0.84702 1.93242 1.31343 1.95612 1.94000 1.93146 1.94163 1.68954 1.58168 1.93261 1.85443 1.41730 1.93371 1.20826 0.90351 0.95553 0.82703 1.21707 0.97040 0.92054 1.03795 1.21537 0.98084 0.97499 0.98185 1.21631 0.97788 0.97558 0.98773 1.22638 0.98038 0.93404 1.04212 1.21803 0.97176 0.99568 0.96244 1.22252 0.95376 0.94977 0.93879 0.92566 0.97575 0.96515 0.96044 0.89646 0.87011 0.88101 0.90161 0.90450 0.90266 0.92724 0.91390 0.91475 0.89541 0.92249 0.90644 0.92098 0.96914 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.95 13.29 21.45 0.28 -52.67 16 2 C 0.02 1.06 5.46 84.66 0.46 1.52 16 3 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.56 -29.64 7.78 25.60 0.20 -29.45 16 8 H 0.05 2.70 5.90 -2.91 -0.02 2.68 16 9 C 0.20 9.91 5.17 85.56 0.44 10.35 16 10 N -0.53 -20.15 4.33 -900.07 -3.90 -24.05 16 11 C 0.06 1.92 5.03 86.38 0.43 2.36 16 12 C 0.10 2.44 5.94 86.34 0.51 2.95 16 13 N -0.58 -15.65 2.02 -772.19 -1.56 -17.21 16 14 C 0.47 12.63 4.68 87.66 0.41 13.04 16 15 O -0.46 -14.02 10.84 -3.02 -0.03 -14.05 16 16 C 0.45 10.46 3.04 71.24 0.22 10.68 16 17 F -0.16 -3.89 16.92 44.97 0.76 -3.13 16 18 F -0.16 -3.63 14.53 44.97 0.65 -2.98 16 19 F -0.16 -3.24 16.45 44.97 0.74 -2.50 16 20 C 0.19 5.28 0.67 3.45 0.00 5.29 16 21 C -0.11 -2.53 4.60 30.56 0.14 -2.39 16 22 C -0.12 -2.28 5.73 30.60 0.18 -2.10 16 23 C -0.12 -2.35 5.92 30.59 0.18 -2.17 16 24 C -0.15 -3.54 4.66 30.60 0.14 -3.40 16 25 C -0.11 -3.00 4.20 30.55 0.13 -2.87 16 26 C 0.06 2.30 4.02 86.33 0.35 2.65 16 27 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.01 0.32 7.94 -2.39 -0.02 0.30 16 29 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.02 0.85 6.48 -2.39 -0.02 0.84 16 31 H 0.09 2.93 8.11 -2.39 -0.02 2.91 16 32 H 0.11 2.50 4.94 -2.39 -0.01 2.49 16 33 H 0.10 2.23 7.61 -2.39 -0.02 2.21 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 35 H 0.08 1.94 7.06 -2.38 -0.02 1.92 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.13 6.47 -2.39 -0.02 1.12 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 2.31 3.47 -96.52 -0.34 1.97 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 43 H 0.06 1.95 6.62 -2.39 -0.02 1.94 16 44 H 0.01 0.53 7.32 -2.38 -0.02 0.51 16 45 H 0.08 2.74 7.98 -2.39 -0.02 2.73 16 Total: -1.00 -58.24 341.34 3.47 -54.78 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.69 Total: 10.07 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 3.80 Total: 6.45 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -5.17 Total: -93.92 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.03 Total: -14.05 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 2.15 Total: -8.61 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -58.24 3.47 -54.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847090975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.852 kcal (2) G-P(sol) polarization free energy of solvation -58.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds