Wall clock time and date at job start Tue Mar 31 2020 17:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47218 * 2 1 4 4 O 1.42898 * 109.47360 * 239.99523 * 2 1 3 5 5 C 1.53002 * 109.46940 * 119.99770 * 2 1 3 6 6 H 1.09004 * 109.47477 * 294.04083 * 5 2 1 7 7 O 1.42904 * 109.46962 * 54.03694 * 5 2 1 8 8 C 1.35897 * 117.00250 * 262.54855 * 7 5 2 9 9 C 1.38738 * 120.05513 * 357.97327 * 8 7 5 10 10 C 1.38136 * 119.94811 * 179.97438 * 9 8 7 11 11 C 1.38275 * 120.05395 * 0.02562 * 10 9 8 12 12 C 1.38262 * 120.10778 * 0.27203 * 11 10 9 13 13 C 1.38143 * 120.06053 * 359.45563 * 12 11 10 14 14 C 1.50697 * 109.47137 * 174.03641 * 5 2 1 15 15 O 1.20826 * 119.99945 * 248.42982 * 14 5 2 16 16 O 1.34233 * 119.99940 * 68.43211 * 14 5 2 17 17 C 1.45200 * 116.99878 * 183.56676 * 16 14 5 18 18 C 1.53002 * 109.46900 * 185.15287 * 17 16 14 19 19 C 1.50693 * 115.55190 * 305.47336 * 18 17 16 20 20 H 1.07994 * 120.00113 * 144.20216 * 19 18 17 21 21 C 1.37880 * 119.99767 * 324.20541 * 19 18 17 22 22 N 1.31508 * 120.00288 * 3.16033 * 21 19 18 23 23 Si 1.86810 * 119.99829 * 183.15411 * 21 19 18 24 24 H 1.48503 * 109.46612 * 60.00352 * 23 21 19 25 25 H 1.48498 * 109.46801 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47353 * 300.00408 * 23 21 19 27 27 C 1.53004 * 117.49421 * 159.80283 * 18 17 16 28 28 C 1.53004 * 117.49652 * 91.14416 * 18 17 16 29 29 H 1.09002 * 109.46875 * 300.00277 * 1 2 3 30 30 H 1.09000 * 109.47054 * 60.00175 * 1 2 3 31 31 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47184 * 185.82430 * 3 2 1 33 33 H 1.08993 * 109.47102 * 305.82989 * 3 2 1 34 34 H 1.08998 * 109.46917 * 65.82935 * 3 2 1 35 35 H 0.96703 * 113.99439 * 60.00554 * 4 2 1 36 36 H 1.07998 * 120.02548 * 359.95279 * 9 8 7 37 37 H 1.08003 * 119.97898 * 180.02562 * 10 9 8 38 38 H 1.07997 * 119.94515 * 180.02562 * 11 10 9 39 39 H 1.08006 * 119.97010 * 179.70424 * 12 11 10 40 40 H 1.08001 * 120.03289 * 180.27734 * 13 12 11 41 41 H 1.09001 * 109.47245 * 305.15408 * 17 16 14 42 42 H 1.08998 * 109.47138 * 65.15103 * 17 16 14 43 43 H 0.96999 * 120.00269 * 185.01435 * 22 21 19 44 44 H 1.08997 * 117.50269 * 0.02562 * 27 18 17 45 45 H 1.08999 * 117.49380 * 145.02650 * 27 18 17 46 46 H 1.08999 * 117.49545 * 214.97863 * 28 18 17 47 47 H 1.09001 * 117.49801 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.7664 -0.1495 2.1361 7 8 1.4527 -2.0220 1.3214 8 6 0.3613 -2.1630 2.1187 9 6 -0.1092 -1.0820 2.8501 10 6 -1.2191 -1.2276 3.6594 11 6 -1.8608 -2.4496 3.7415 12 6 -1.3902 -3.5301 3.0184 13 6 -0.2840 -3.3882 2.2032 14 6 3.5397 -0.8504 1.1778 15 8 4.0462 -1.9379 1.0340 16 8 4.3128 0.2428 1.2738 17 6 5.7439 0.0538 1.1169 18 6 6.4652 1.3765 1.3839 19 6 5.9953 2.5502 0.5638 20 1 5.9687 3.5377 1.0000 21 6 5.5992 2.3631 -0.7436 22 7 5.5723 1.1522 -1.2558 23 14 5.1007 3.8300 -1.7875 24 1 6.2415 4.7751 -1.8899 25 1 4.7206 3.3647 -3.1455 26 1 3.9445 4.5161 -1.1570 27 6 7.9526 1.3113 1.7366 28 6 6.9237 1.6544 2.8169 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1250 1.4443 -0.1043 33 1 1.5940 1.9855 -0.8331 34 1 1.7644 1.9253 0.9376 35 1 1.7211 -0.2701 -1.9979 36 1 0.3922 -0.1275 2.7869 37 1 -1.5860 -0.3862 4.2287 38 1 -2.7286 -2.5614 4.3745 39 1 -1.8903 -4.4848 3.0878 40 1 0.0805 -4.2313 1.6351 41 1 6.0909 -0.6986 1.8251 42 1 5.9574 -0.2778 0.1008 43 1 5.3643 1.0272 -2.1949 44 1 8.4173 0.3263 1.7780 45 1 8.5911 2.1177 1.3757 46 1 6.8859 2.6862 3.1662 47 1 6.7112 0.8951 3.5695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849779281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:18 Heat of formation + Delta-G solvation = -104.945522 kcal Electronic energy + Delta-G solvation = -30727.645146 eV Core-core repulsion = 26649.773792 eV Total energy + Delta-G solvation = -4077.871354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = -5.07 seconds Orbital eigenvalues (eV) -40.84668 -39.30832 -37.94814 -36.82942 -36.56582 -34.92167 -32.39270 -32.21572 -31.00224 -30.15158 -28.20601 -26.91287 -26.19072 -25.30148 -22.90867 -22.28386 -21.39318 -21.15909 -19.73845 -19.18107 -18.62857 -16.96538 -16.67399 -16.34821 -16.27301 -15.82620 -15.63799 -15.20444 -14.77663 -14.57179 -14.31154 -14.01323 -13.78808 -13.63861 -13.44681 -13.08020 -12.84588 -12.55437 -12.31141 -12.06443 -11.93358 -11.84700 -11.68781 -11.40367 -11.37286 -11.36415 -10.96777 -10.89660 -10.76188 -10.57388 -10.54163 -10.33032 -9.88326 -9.78725 -9.39672 -9.36240 -9.10207 -8.98492 -8.76950 -8.26140 -8.20557 -6.00607 -4.13834 1.22768 1.35942 2.67309 2.96875 3.22376 3.28864 3.31424 3.66606 3.86577 4.16387 4.31269 4.68336 4.74205 4.80032 4.90373 4.92861 5.05482 5.12611 5.18972 5.26874 5.39914 5.42466 5.54244 5.62333 5.67008 5.77252 5.90445 6.03614 6.04777 6.15985 6.17973 6.20641 6.24451 6.29906 6.41970 6.46924 6.59702 6.61808 6.68032 6.79548 6.96665 7.02895 7.21772 7.36888 7.46559 7.57834 7.89243 7.91018 8.30454 8.68090 8.84530 9.47323 10.94339 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.003998 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.495479 B = 7000.978662 C = 7801.645106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.197 4.197 4 O -0.539 6.539 5 C 0.105 3.895 6 H 0.117 0.883 7 O -0.273 6.273 8 C 0.137 3.863 9 C -0.217 4.217 10 C -0.077 4.077 11 C -0.165 4.165 12 C -0.080 4.080 13 C -0.152 4.152 14 C 0.467 3.533 15 O -0.502 6.502 16 O -0.314 6.314 17 C 0.120 3.880 18 C 0.048 3.952 19 C -0.482 4.482 20 H 0.060 0.940 21 C 0.078 3.922 22 N -0.874 5.874 23 Si 0.887 3.113 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.195 4.195 28 C -0.211 4.211 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.375 0.625 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.021 0.979 42 H 0.120 0.880 43 H 0.264 0.736 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 -3.306 5.504 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.084 3.916 3 C -0.254 4.254 4 O -0.344 6.344 5 C 0.047 3.953 6 H 0.134 0.866 7 O -0.185 6.185 8 C 0.091 3.909 9 C -0.236 4.236 10 C -0.095 4.095 11 C -0.184 4.184 12 C -0.098 4.098 13 C -0.171 4.171 14 C 0.308 3.692 15 O -0.390 6.390 16 O -0.228 6.228 17 C 0.047 3.953 18 C 0.047 3.953 19 C -0.519 4.519 20 H 0.079 0.921 21 C -0.126 4.126 22 N -0.511 5.511 23 Si 0.715 3.285 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.233 4.233 28 C -0.248 4.248 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.223 0.777 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.039 0.961 42 H 0.138 0.862 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.945 -4.246 5.622 15.624 hybrid contribution -0.373 1.284 -0.874 1.597 sum -14.318 -2.962 4.748 15.373 Atomic orbital electron populations 1.22629 0.95216 1.03011 1.02941 1.21382 0.92589 0.92136 0.85485 1.22749 1.07442 0.93136 1.02102 1.86703 1.76867 1.55918 1.14927 1.21925 0.89859 0.83897 0.99656 0.86571 1.86283 1.40264 1.30325 1.61650 1.19174 0.87157 0.94446 0.90114 1.21341 1.00813 0.99123 1.02275 1.20917 0.94291 0.97547 0.96755 1.21032 1.01631 0.93330 1.02361 1.20950 0.95012 0.98826 0.95046 1.20463 0.97549 0.95930 1.03133 1.22410 0.88941 0.83756 0.74129 1.90594 1.75186 1.28824 1.44422 1.86435 1.22124 1.33956 1.80308 1.22969 0.73387 0.95647 1.03301 1.18917 0.90694 0.94140 0.91501 1.20395 1.43082 0.92241 0.96201 0.92145 1.24895 0.94347 0.95497 0.97812 1.69764 1.48135 1.19702 1.13541 0.86739 0.79230 0.82985 0.79569 1.20296 1.21108 1.20001 1.22988 0.94807 1.00316 1.05162 1.22962 1.07921 1.00259 0.93640 0.91363 0.91602 0.91456 0.86293 0.92307 0.91746 0.77744 0.85065 0.85786 0.86076 0.85473 0.85057 0.96088 0.86241 0.92525 0.91435 0.89782 0.90334 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 7.51 37.16 0.28 -2.01 16 2 C 0.13 2.03 0.88 -90.62 -0.08 1.95 16 3 C -0.20 -3.33 8.29 37.16 0.31 -3.03 16 4 O -0.54 -9.77 12.41 -39.10 -0.49 -10.26 16 5 C 0.10 1.86 2.00 -27.88 -0.06 1.81 16 6 H 0.12 1.77 5.21 -51.93 -0.27 1.50 16 7 O -0.27 -4.90 8.88 -43.49 -0.39 -5.28 16 8 C 0.14 1.99 5.21 -39.21 -0.20 1.79 16 9 C -0.22 -2.69 7.41 -39.43 -0.29 -2.98 16 10 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16 11 C -0.17 -1.60 10.04 -39.56 -0.40 -1.99 16 12 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 13 C -0.15 -1.95 9.99 -39.43 -0.39 -2.34 16 14 C 0.47 10.46 6.63 36.00 0.24 10.69 16 15 O -0.50 -12.73 16.18 -25.44 -0.41 -13.14 16 16 O -0.31 -7.33 7.61 -39.27 -0.30 -7.63 16 17 C 0.12 2.94 4.44 37.16 0.17 3.11 16 18 C 0.05 1.16 2.19 -155.66 -0.34 0.82 16 19 C -0.48 -12.38 8.79 -34.44 -0.30 -12.69 16 20 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 21 C 0.08 1.96 4.57 -17.82 -0.08 1.88 16 22 N -0.87 -22.78 10.16 55.43 0.56 -22.22 16 23 Si 0.89 19.74 29.54 -169.99 -5.02 14.71 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 C -0.19 -4.25 9.96 -26.69 -0.27 -4.52 16 28 C -0.21 -4.48 9.93 -26.69 -0.26 -4.74 16 29 H 0.07 0.76 6.68 -51.93 -0.35 0.41 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.91 6.66 -51.93 -0.35 0.56 16 32 H 0.12 2.54 5.28 -51.93 -0.27 2.26 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.38 5.23 9.05 45.56 0.41 5.64 16 36 H 0.13 1.52 5.09 -52.49 -0.27 1.25 16 37 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.02 0.50 7.93 -51.93 -0.41 0.09 16 42 H 0.12 3.25 5.90 -51.93 -0.31 2.95 16 43 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 46 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 47 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -30.58 381.17 -8.79 -39.37 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -6.01 Total: 13.37 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -2.48 Total: -14.66 kcal Atomic # 7 Polarization: -22.78 SS G_CDS: 0.56 Total: -22.22 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -1.58 Total: -36.31 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.58 -8.79 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849779281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.579 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -5.06 seconds