Wall clock time and date at job start Tue Mar 31 2020 17:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47218 * 2 1 4 4 O 1.42898 * 109.47360 * 239.99523 * 2 1 3 5 5 C 1.53002 * 109.46940 * 119.99770 * 2 1 3 6 6 H 1.09004 * 109.47477 * 294.04083 * 5 2 1 7 7 O 1.42904 * 109.46962 * 54.03694 * 5 2 1 8 8 C 1.35897 * 117.00250 * 262.54855 * 7 5 2 9 9 C 1.38738 * 120.05513 * 357.97327 * 8 7 5 10 10 C 1.38136 * 119.94811 * 179.97438 * 9 8 7 11 11 C 1.38275 * 120.05395 * 0.02562 * 10 9 8 12 12 C 1.38262 * 120.10778 * 0.27203 * 11 10 9 13 13 C 1.38143 * 120.06053 * 359.45563 * 12 11 10 14 14 C 1.50697 * 109.47137 * 174.03641 * 5 2 1 15 15 O 1.20826 * 119.99945 * 248.42982 * 14 5 2 16 16 O 1.34233 * 119.99940 * 68.43211 * 14 5 2 17 17 C 1.45200 * 116.99878 * 183.56676 * 16 14 5 18 18 C 1.53002 * 109.46900 * 185.15287 * 17 16 14 19 19 C 1.50693 * 115.55190 * 305.47336 * 18 17 16 20 20 H 1.07994 * 120.00113 * 144.20216 * 19 18 17 21 21 C 1.37880 * 119.99767 * 324.20541 * 19 18 17 22 22 N 1.31508 * 120.00288 * 3.16033 * 21 19 18 23 23 Si 1.86810 * 119.99829 * 183.15411 * 21 19 18 24 24 H 1.48503 * 109.46612 * 60.00352 * 23 21 19 25 25 H 1.48498 * 109.46801 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47353 * 300.00408 * 23 21 19 27 27 C 1.53004 * 117.49421 * 159.80283 * 18 17 16 28 28 C 1.53004 * 117.49652 * 91.14416 * 18 17 16 29 29 H 1.09002 * 109.46875 * 300.00277 * 1 2 3 30 30 H 1.09000 * 109.47054 * 60.00175 * 1 2 3 31 31 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47184 * 185.82430 * 3 2 1 33 33 H 1.08993 * 109.47102 * 305.82989 * 3 2 1 34 34 H 1.08998 * 109.46917 * 65.82935 * 3 2 1 35 35 H 0.96703 * 113.99439 * 60.00554 * 4 2 1 36 36 H 1.07998 * 120.02548 * 359.95279 * 9 8 7 37 37 H 1.08003 * 119.97898 * 180.02562 * 10 9 8 38 38 H 1.07997 * 119.94515 * 180.02562 * 11 10 9 39 39 H 1.08006 * 119.97010 * 179.70424 * 12 11 10 40 40 H 1.08001 * 120.03289 * 180.27734 * 13 12 11 41 41 H 1.09001 * 109.47245 * 305.15408 * 17 16 14 42 42 H 1.08998 * 109.47138 * 65.15103 * 17 16 14 43 43 H 0.96999 * 120.00269 * 185.01435 * 22 21 19 44 44 H 1.08997 * 117.50269 * 0.02562 * 27 18 17 45 45 H 1.08999 * 117.49380 * 145.02650 * 27 18 17 46 46 H 1.08999 * 117.49545 * 214.97863 * 28 18 17 47 47 H 1.09001 * 117.49801 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.7664 -0.1495 2.1361 7 8 1.4527 -2.0220 1.3214 8 6 0.3613 -2.1630 2.1187 9 6 -0.1092 -1.0820 2.8501 10 6 -1.2191 -1.2276 3.6594 11 6 -1.8608 -2.4496 3.7415 12 6 -1.3902 -3.5301 3.0184 13 6 -0.2840 -3.3882 2.2032 14 6 3.5397 -0.8504 1.1778 15 8 4.0462 -1.9379 1.0340 16 8 4.3128 0.2428 1.2738 17 6 5.7439 0.0538 1.1169 18 6 6.4652 1.3765 1.3839 19 6 5.9953 2.5502 0.5638 20 1 5.9687 3.5377 1.0000 21 6 5.5992 2.3631 -0.7436 22 7 5.5723 1.1522 -1.2558 23 14 5.1007 3.8300 -1.7875 24 1 6.2415 4.7751 -1.8899 25 1 4.7206 3.3647 -3.1455 26 1 3.9445 4.5161 -1.1570 27 6 7.9526 1.3113 1.7366 28 6 6.9237 1.6544 2.8169 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1250 1.4443 -0.1043 33 1 1.5940 1.9855 -0.8331 34 1 1.7644 1.9253 0.9376 35 1 1.7211 -0.2701 -1.9979 36 1 0.3922 -0.1275 2.7869 37 1 -1.5860 -0.3862 4.2287 38 1 -2.7286 -2.5614 4.3745 39 1 -1.8903 -4.4848 3.0878 40 1 0.0805 -4.2313 1.6351 41 1 6.0909 -0.6986 1.8251 42 1 5.9574 -0.2778 0.1008 43 1 5.3643 1.0272 -2.1949 44 1 8.4173 0.3263 1.7780 45 1 8.5911 2.1177 1.3757 46 1 6.8859 2.6862 3.1662 47 1 6.7112 0.8951 3.5695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849779281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:02 Heat of formation + Delta-G solvation = -122.008980 kcal Electronic energy + Delta-G solvation = -30728.385073 eV Core-core repulsion = 26649.773792 eV Total energy + Delta-G solvation = -4078.611281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.14955 -40.80274 -39.17476 -38.48428 -37.89098 -36.74257 -34.15130 -33.67290 -31.88393 -31.13644 -29.56669 -28.12568 -27.93502 -27.20078 -23.84910 -23.28275 -23.03025 -22.69888 -21.13483 -21.05687 -19.77220 -18.58700 -18.38386 -17.78117 -17.49197 -17.32877 -16.84725 -16.74072 -16.37610 -16.00614 -15.51406 -15.22898 -15.16293 -14.95726 -14.71677 -14.38365 -14.07495 -13.94473 -13.88894 -13.48357 -13.23653 -13.14184 -13.02525 -12.98151 -12.69916 -12.62606 -12.45825 -12.38257 -12.31185 -12.13696 -11.95158 -11.75123 -11.61888 -11.28382 -11.18237 -11.00807 -10.82130 -10.64600 -10.12274 -9.94728 -9.18890 -7.92501 -6.12077 0.38343 0.46873 1.16481 1.36780 1.45499 1.48174 1.54334 2.41895 2.47127 2.82555 2.94372 3.08599 3.46142 3.52726 3.71325 3.74192 3.89123 3.95359 4.01048 4.09924 4.22656 4.31080 4.38104 4.46773 4.53907 4.59281 4.62826 4.70556 4.74649 4.79376 4.83201 4.90556 4.95240 4.99651 5.09106 5.12326 5.19144 5.35175 5.44846 5.48176 5.51429 5.60252 5.62039 5.77201 5.83133 5.89454 6.32468 6.37776 6.76355 6.82225 6.95300 7.51428 9.00334 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.003998 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.495479 B = 7000.978662 C = 7801.645106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.128 3.872 3 C -0.196 4.196 4 O -0.570 6.570 5 C 0.110 3.890 6 H 0.141 0.859 7 O -0.302 6.302 8 C 0.102 3.898 9 C -0.223 4.223 10 C -0.076 4.076 11 C -0.157 4.157 12 C -0.078 4.078 13 C -0.171 4.171 14 C 0.459 3.541 15 O -0.544 6.544 16 O -0.314 6.314 17 C 0.128 3.872 18 C 0.015 3.985 19 C -0.499 4.499 20 H 0.056 0.944 21 C 0.046 3.954 22 N -0.893 5.893 23 Si 0.939 3.061 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.264 1.264 27 C -0.190 4.190 28 C -0.190 4.190 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.389 0.611 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.018 0.982 42 H 0.088 0.912 43 H 0.259 0.741 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.269 -2.061 7.010 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.087 3.913 3 C -0.253 4.253 4 O -0.378 6.378 5 C 0.052 3.948 6 H 0.158 0.842 7 O -0.216 6.216 8 C 0.058 3.942 9 C -0.241 4.241 10 C -0.094 4.094 11 C -0.175 4.175 12 C -0.095 4.095 13 C -0.190 4.190 14 C 0.302 3.698 15 O -0.435 6.435 16 O -0.228 6.228 17 C 0.055 3.945 18 C 0.014 3.986 19 C -0.536 4.536 20 H 0.074 0.926 21 C -0.155 4.155 22 N -0.530 5.530 23 Si 0.765 3.235 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.188 1.188 27 C -0.227 4.227 28 C -0.227 4.227 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.239 0.761 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.141 0.859 41 H 0.036 0.964 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.813 -2.983 7.141 18.509 hybrid contribution 0.459 0.813 -1.262 1.570 sum -16.353 -2.170 5.879 17.513 Atomic orbital electron populations 1.22507 0.91966 1.03007 1.04899 1.21481 0.94761 0.91020 0.84032 1.22698 1.04700 0.94099 1.03846 1.86669 1.77780 1.57000 1.16353 1.22013 0.86256 0.84840 1.01674 0.84185 1.86233 1.41936 1.30231 1.63177 1.19490 0.87188 0.96025 0.91473 1.21454 1.01619 0.98557 1.02458 1.21315 0.93210 0.98913 0.95936 1.21485 1.01946 0.92575 1.01491 1.21306 0.93860 1.00504 0.93868 1.20662 0.98758 0.95370 1.04207 1.23497 0.90993 0.82817 0.72452 1.90554 1.76362 1.30149 1.46435 1.86463 1.21579 1.34528 1.80235 1.22686 0.74558 0.95987 1.01274 1.19014 0.92167 0.93597 0.93792 1.20570 1.43775 0.92430 0.96837 0.92562 1.25431 0.94164 0.97364 0.98575 1.69934 1.48719 1.21187 1.13209 0.85915 0.79078 0.80331 0.78146 1.20469 1.21150 1.18825 1.23008 0.93794 1.00959 1.04982 1.22976 1.05951 1.01216 0.92530 0.89401 0.89550 0.92402 0.90561 0.90479 0.89991 0.76122 0.84629 0.82824 0.82780 0.82720 0.85910 0.96428 0.89380 0.93132 0.90499 0.89573 0.89345 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 7.51 71.98 0.54 -3.35 16 2 C 0.13 4.09 0.88 -10.79 -0.01 4.08 16 3 C -0.20 -6.46 8.29 71.98 0.60 -5.86 16 4 O -0.57 -21.20 12.41 -145.28 -1.80 -23.01 16 5 C 0.11 3.96 2.00 29.85 0.06 4.02 16 6 H 0.14 4.19 5.21 -2.39 -0.01 4.18 16 7 O -0.30 -11.15 8.88 -69.37 -0.62 -11.77 16 8 C 0.10 2.95 5.21 22.51 0.12 3.07 16 9 C -0.22 -5.06 7.41 22.36 0.17 -4.90 16 10 C -0.08 -1.28 10.04 22.25 0.22 -1.06 16 11 C -0.16 -2.40 10.04 22.28 0.22 -2.18 16 12 C -0.08 -1.39 10.04 22.25 0.22 -1.17 16 13 C -0.17 -4.32 9.99 22.37 0.22 -4.10 16 14 C 0.46 21.41 6.63 71.24 0.47 21.89 16 15 O -0.54 -29.20 16.18 28.36 0.46 -28.75 16 16 O -0.31 -15.17 7.61 -51.45 -0.39 -15.56 16 17 C 0.13 6.56 4.44 71.98 0.32 6.88 16 18 C 0.01 0.72 2.19 -52.93 -0.12 0.60 16 19 C -0.50 -25.86 8.79 25.60 0.23 -25.63 16 20 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 21 C 0.05 2.34 4.57 84.66 0.39 2.73 16 22 N -0.89 -48.06 10.16 21.45 0.22 -47.84 16 23 Si 0.94 40.53 29.54 68.60 2.03 42.55 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 C -0.19 -8.23 9.96 30.62 0.30 -7.92 16 28 C -0.19 -7.89 9.93 30.62 0.30 -7.58 16 29 H 0.09 1.69 6.68 -2.39 -0.02 1.67 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.49 6.66 -2.39 -0.02 1.48 16 32 H 0.08 3.27 5.28 -2.39 -0.01 3.26 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.39 11.04 9.05 -74.06 -0.67 10.37 16 36 H 0.14 2.84 5.09 -2.91 -0.01 2.82 16 37 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 41 H 0.02 0.88 7.93 -2.39 -0.02 0.86 16 42 H 0.09 5.07 5.90 -2.39 -0.01 5.06 16 43 H 0.26 13.67 8.32 -92.71 -0.77 12.90 16 44 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 46 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 47 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -69.41 381.17 4.48 -64.93 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: 0.32 Total: 39.91 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 4.26 Total: -20.48 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.22 Total: -47.84 kcal Atomic # 8 Polarization: -76.73 SS G_CDS: -2.35 Total: -79.08 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Total: -69.41 4.48 -64.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849779281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.076 kcal (2) G-P(sol) polarization free energy of solvation -69.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds