Wall clock time and date at job start Tue Mar 31 2020 17:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47429 * 2 1 4 4 O 1.42903 * 109.46828 * 239.99707 * 2 1 3 5 5 C 1.53000 * 109.46946 * 120.00158 * 2 1 3 6 6 H 1.08997 * 109.47610 * 56.91342 * 5 2 1 7 7 O 1.42907 * 109.47154 * 296.91508 * 5 2 1 8 8 C 1.35895 * 117.00031 * 95.31470 * 7 5 2 9 9 C 1.38732 * 120.05548 * 179.34869 * 8 7 5 10 10 C 1.38150 * 119.94398 * 179.73833 * 9 8 7 11 11 C 1.38271 * 120.05106 * 0.51697 * 10 9 8 12 12 C 1.38262 * 120.11485 * 359.75721 * 11 10 9 13 13 C 1.38146 * 120.05609 * 359.97438 * 12 11 10 14 14 C 1.50707 * 109.47129 * 176.91563 * 5 2 1 15 15 O 1.20826 * 119.99787 * 111.98423 * 14 5 2 16 16 O 1.34227 * 119.99818 * 291.98591 * 14 5 2 17 17 C 1.45204 * 116.99604 * 185.29387 * 16 14 5 18 18 C 1.53002 * 109.46640 * 184.05705 * 17 16 14 19 19 C 1.50698 * 115.54591 * 175.34903 * 18 17 16 20 20 H 1.08005 * 120.00019 * 212.75805 * 19 18 17 21 21 C 1.37876 * 120.00371 * 32.76503 * 19 18 17 22 22 N 1.31520 * 119.99719 * 204.88072 * 21 19 18 23 23 Si 1.86797 * 119.99933 * 24.86871 * 21 19 18 24 24 H 1.48496 * 109.47422 * 265.36442 * 23 21 19 25 25 H 1.48499 * 109.47306 * 25.36907 * 23 21 19 26 26 H 1.48506 * 109.46854 * 145.36263 * 23 21 19 27 27 C 1.53002 * 117.50110 * 321.01471 * 18 17 16 28 28 C 1.52999 * 117.50308 * 29.67295 * 18 17 16 29 29 H 1.09001 * 109.46574 * 300.00344 * 1 2 3 30 30 H 1.08994 * 109.47127 * 60.00027 * 1 2 3 31 31 H 1.08993 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46941 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46682 * 299.99881 * 3 2 1 34 34 H 1.08995 * 109.46970 * 59.99839 * 3 2 1 35 35 H 0.96701 * 113.99904 * 305.02758 * 4 2 1 36 36 H 1.07993 * 120.02828 * 359.97438 * 9 8 7 37 37 H 1.07998 * 119.97362 * 180.22664 * 10 9 8 38 38 H 1.08001 * 119.93616 * 179.73925 * 11 10 9 39 39 H 1.08003 * 119.97323 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.02763 * 179.97438 * 13 12 11 41 41 H 1.08993 * 109.47137 * 64.05310 * 17 16 14 42 42 H 1.09001 * 109.46598 * 304.05085 * 17 16 14 43 43 H 0.96999 * 119.99669 * 179.97438 * 22 21 19 44 44 H 1.09001 * 117.50222 * 215.01014 * 27 18 17 45 45 H 1.09004 * 117.49442 * 0.02562 * 27 18 17 46 46 H 1.09001 * 117.49655 * 359.97438 * 28 18 17 47 47 H 1.08996 * 117.49542 * 144.97069 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.6322 -1.7317 1.2774 7 8 1.6238 -0.0071 2.4149 8 6 0.4817 -0.4264 3.0204 9 6 0.0267 0.2129 4.1645 10 6 -1.1375 -0.2119 4.7750 11 6 -1.8433 -1.2801 4.2528 12 6 -1.3889 -1.9226 3.1160 13 6 -0.2282 -1.4981 2.4986 14 6 3.5451 -0.7879 1.2116 15 8 4.1978 -0.1565 2.0087 16 8 4.1605 -1.5485 0.2927 17 6 5.6051 -1.6589 0.3888 18 6 6.1337 -2.4756 -0.7922 19 6 7.6338 -2.5836 -0.8880 20 1 8.1103 -2.6421 -1.8555 21 6 8.3980 -2.6080 0.2593 22 7 9.6531 -2.2168 0.2219 23 14 7.6506 -3.1964 1.8670 24 1 7.1532 -2.0290 2.6383 25 1 6.5217 -4.1176 1.5802 26 1 8.6828 -3.9106 2.6606 27 6 5.3083 -3.6827 -1.2422 28 6 5.3446 -2.4166 -2.1016 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4423 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.6593 -1.5701 -1.2725 36 1 0.5800 1.0444 4.5752 37 1 -1.4941 0.2878 5.6635 38 1 -2.7509 -1.6133 4.7341 39 1 -1.9417 -2.7570 2.7103 40 1 0.1265 -2.0005 1.6109 41 1 5.8703 -2.1558 1.3219 42 1 6.0477 -0.6630 0.3688 43 1 10.1906 -2.2335 1.0291 44 1 5.8503 -4.5551 -1.6075 45 1 4.3885 -3.8948 -0.6971 46 1 4.4485 -1.7963 -2.1216 47 1 5.9104 -2.4555 -3.0324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849779283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:29 Heat of formation + Delta-G solvation = -100.252706 kcal Electronic energy + Delta-G solvation = -30310.214834 eV Core-core repulsion = 26232.546976 eV Total energy + Delta-G solvation = -4077.667858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 7.24 seconds Orbital eigenvalues (eV) -41.33179 -39.85358 -38.38234 -37.27012 -36.91835 -35.27514 -32.60954 -32.32212 -31.30129 -30.45910 -28.74259 -27.61450 -27.25239 -25.15767 -23.10600 -22.63552 -21.59461 -21.32984 -20.26509 -19.14647 -18.80943 -17.93731 -17.22041 -16.95113 -16.33982 -16.21491 -16.00505 -15.55440 -15.28517 -14.74683 -14.61762 -14.40000 -14.07685 -13.83264 -13.70066 -13.19372 -13.10601 -12.81849 -12.65764 -12.52455 -12.43677 -12.30851 -12.16681 -11.91591 -11.85445 -11.72069 -11.19670 -11.10254 -10.92401 -10.88826 -10.51963 -10.39257 -10.37884 -10.11638 -9.92917 -9.55148 -9.32308 -9.21203 -8.69334 -8.49750 -8.29314 -6.32945 -4.16505 0.99780 1.10685 2.19645 2.34421 3.19817 3.28637 3.34415 3.36169 3.46892 4.03149 4.12265 4.28254 4.29897 4.47656 4.54870 4.60128 4.70287 4.78008 4.85477 4.93804 5.04590 5.15515 5.30053 5.33542 5.34410 5.46203 5.63201 5.67408 5.73335 5.74690 5.82171 5.85518 5.97013 6.02966 6.06419 6.12273 6.20574 6.25278 6.40774 6.55717 6.67044 6.72435 6.95977 7.00618 7.03509 7.26728 7.45859 7.63563 8.02564 8.38782 8.79299 9.35645 10.78910 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.003625 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.142969 B = 7721.964609 C = 8458.948156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.140 4.140 4 O -0.529 6.529 5 C 0.064 3.936 6 H 0.111 0.889 7 O -0.276 6.276 8 C 0.129 3.871 9 C -0.148 4.148 10 C -0.080 4.080 11 C -0.159 4.159 12 C -0.078 4.078 13 C -0.213 4.213 14 C 0.461 3.539 15 O -0.490 6.490 16 O -0.335 6.335 17 C 0.098 3.902 18 C 0.009 3.991 19 C -0.493 4.493 20 H 0.085 0.915 21 C 0.085 3.915 22 N -0.868 5.868 23 Si 0.856 3.144 24 H -0.273 1.273 25 H -0.259 1.259 26 H -0.287 1.287 27 C -0.203 4.203 28 C -0.177 4.177 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.379 0.621 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.269 0.731 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.624 2.814 4.566 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.080 3.920 3 C -0.197 4.197 4 O -0.335 6.335 5 C 0.006 3.994 6 H 0.128 0.872 7 O -0.189 6.189 8 C 0.084 3.916 9 C -0.166 4.166 10 C -0.098 4.098 11 C -0.177 4.177 12 C -0.096 4.096 13 C -0.231 4.231 14 C 0.301 3.699 15 O -0.377 6.377 16 O -0.251 6.251 17 C 0.026 3.974 18 C 0.008 3.992 19 C -0.529 4.529 20 H 0.103 0.897 21 C -0.121 4.121 22 N -0.501 5.501 23 Si 0.684 3.316 24 H -0.200 1.200 25 H -0.183 1.183 26 H -0.214 1.214 27 C -0.241 4.241 28 C -0.214 4.214 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.226 0.774 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.705 3.763 4.842 25.454 hybrid contribution -0.456 -1.097 1.109 1.625 sum -25.161 2.666 5.950 25.992 Atomic orbital electron populations 1.22698 0.94244 1.02967 1.03938 1.21449 0.93426 0.94065 0.83039 1.21765 1.02607 0.92348 1.02983 1.86757 1.73012 1.32064 1.41631 1.22665 0.90887 0.98884 0.86986 0.87182 1.86209 1.38663 1.53991 1.39996 1.19108 0.85995 0.93676 0.92796 1.20480 0.98286 1.02733 0.95151 1.20994 0.93648 0.96116 0.99032 1.21090 1.01237 0.97779 0.97642 1.20940 0.95026 0.98721 0.94946 1.21363 0.98668 0.99608 1.03483 1.22683 0.90059 0.77852 0.79257 1.90698 1.66797 1.41452 1.38744 1.86448 1.25891 1.62751 1.50001 1.23318 0.72858 1.01512 0.99693 1.19297 0.93710 0.95623 0.90549 1.20195 0.85700 1.52179 0.94855 0.89728 1.24948 0.94845 0.93698 0.98614 1.70043 1.08945 1.41423 1.29737 0.87324 0.79646 0.80257 0.84414 1.19991 1.18330 1.21401 1.23105 1.01829 0.93101 1.06054 1.22785 1.02125 1.01228 0.95251 0.90885 0.90598 0.91747 0.91515 0.91072 0.90299 0.77367 0.84908 0.85244 0.85858 0.85640 0.85121 0.92334 0.90422 0.92134 0.89963 0.91226 0.89480 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 7.30 37.16 0.27 -1.26 16 2 C 0.12 1.41 0.92 -90.62 -0.08 1.32 16 3 C -0.14 -1.77 8.46 37.16 0.31 -1.46 16 4 O -0.53 -6.43 11.78 -50.23 -0.59 -7.02 16 5 C 0.06 0.87 2.14 -27.88 -0.06 0.81 16 6 H 0.11 1.22 5.42 -51.93 -0.28 0.94 16 7 O -0.28 -3.85 8.36 -39.23 -0.33 -4.17 16 8 C 0.13 1.49 5.37 -39.21 -0.21 1.28 16 9 C -0.15 -1.53 9.99 -39.43 -0.39 -1.92 16 10 C -0.08 -0.66 10.04 -39.60 -0.40 -1.05 16 11 C -0.16 -1.23 10.04 -39.56 -0.40 -1.62 16 12 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16 13 C -0.21 -2.02 7.16 -39.43 -0.28 -2.31 16 14 C 0.46 8.61 6.05 36.01 0.22 8.82 16 15 O -0.49 -10.86 16.19 -25.44 -0.41 -11.27 16 16 O -0.33 -6.61 7.52 -44.69 -0.34 -6.94 16 17 C 0.10 2.30 4.58 37.16 0.17 2.47 16 18 C 0.01 0.22 1.83 -155.66 -0.29 -0.06 16 19 C -0.49 -13.80 9.48 -34.44 -0.33 -14.12 16 20 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 21 C 0.08 2.42 5.30 -17.82 -0.09 2.32 16 22 N -0.87 -25.90 13.96 55.43 0.77 -25.12 16 23 Si 0.86 21.67 24.47 -169.99 -4.16 17.52 16 24 H -0.27 -7.00 6.80 56.52 0.38 -6.62 16 25 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C -0.20 -4.27 9.66 -26.70 -0.26 -4.53 16 28 C -0.18 -3.67 9.63 -26.70 -0.26 -3.92 16 29 H 0.07 0.65 6.35 -51.93 -0.33 0.32 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.43 6.62 -51.93 -0.34 0.09 16 32 H 0.07 1.03 7.32 -51.93 -0.38 0.65 16 33 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.08 0.94 7.60 -51.93 -0.39 0.55 16 35 H 0.38 3.20 9.03 45.56 0.41 3.61 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.13 1.07 4.45 -52.49 -0.23 0.84 16 41 H 0.06 1.45 3.25 -51.93 -0.17 1.28 16 42 H 0.08 1.92 7.99 -51.93 -0.41 1.50 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 45 H 0.07 1.34 7.81 -51.93 -0.41 0.93 16 46 H 0.09 1.68 7.51 -51.93 -0.39 1.29 16 47 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -33.09 375.80 -7.75 -40.84 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.89 Total: 6.75 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.47 Total: -16.25 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.77 Total: -25.12 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.67 Total: -29.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.16 Total: 17.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.09 -7.75 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849779283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.409 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.24 seconds