Wall clock time and date at job start Tue Mar 31 2020 17:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47429 * 2 1 4 4 O 1.42903 * 109.46828 * 239.99707 * 2 1 3 5 5 C 1.53000 * 109.46946 * 120.00158 * 2 1 3 6 6 H 1.08997 * 109.47610 * 56.91342 * 5 2 1 7 7 O 1.42907 * 109.47154 * 296.91508 * 5 2 1 8 8 C 1.35895 * 117.00031 * 95.31470 * 7 5 2 9 9 C 1.38732 * 120.05548 * 179.34869 * 8 7 5 10 10 C 1.38150 * 119.94398 * 179.73833 * 9 8 7 11 11 C 1.38271 * 120.05106 * 0.51697 * 10 9 8 12 12 C 1.38262 * 120.11485 * 359.75721 * 11 10 9 13 13 C 1.38146 * 120.05609 * 359.97438 * 12 11 10 14 14 C 1.50707 * 109.47129 * 176.91563 * 5 2 1 15 15 O 1.20826 * 119.99787 * 111.98423 * 14 5 2 16 16 O 1.34227 * 119.99818 * 291.98591 * 14 5 2 17 17 C 1.45204 * 116.99604 * 185.29387 * 16 14 5 18 18 C 1.53002 * 109.46640 * 184.05705 * 17 16 14 19 19 C 1.50698 * 115.54591 * 175.34903 * 18 17 16 20 20 H 1.08005 * 120.00019 * 212.75805 * 19 18 17 21 21 C 1.37876 * 120.00371 * 32.76503 * 19 18 17 22 22 N 1.31520 * 119.99719 * 204.88072 * 21 19 18 23 23 Si 1.86797 * 119.99933 * 24.86871 * 21 19 18 24 24 H 1.48496 * 109.47422 * 265.36442 * 23 21 19 25 25 H 1.48499 * 109.47306 * 25.36907 * 23 21 19 26 26 H 1.48506 * 109.46854 * 145.36263 * 23 21 19 27 27 C 1.53002 * 117.50110 * 321.01471 * 18 17 16 28 28 C 1.52999 * 117.50308 * 29.67295 * 18 17 16 29 29 H 1.09001 * 109.46574 * 300.00344 * 1 2 3 30 30 H 1.08994 * 109.47127 * 60.00027 * 1 2 3 31 31 H 1.08993 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46941 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46682 * 299.99881 * 3 2 1 34 34 H 1.08995 * 109.46970 * 59.99839 * 3 2 1 35 35 H 0.96701 * 113.99904 * 305.02758 * 4 2 1 36 36 H 1.07993 * 120.02828 * 359.97438 * 9 8 7 37 37 H 1.07998 * 119.97362 * 180.22664 * 10 9 8 38 38 H 1.08001 * 119.93616 * 179.73925 * 11 10 9 39 39 H 1.08003 * 119.97323 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.02763 * 179.97438 * 13 12 11 41 41 H 1.08993 * 109.47137 * 64.05310 * 17 16 14 42 42 H 1.09001 * 109.46598 * 304.05085 * 17 16 14 43 43 H 0.96999 * 119.99669 * 179.97438 * 22 21 19 44 44 H 1.09001 * 117.50222 * 215.01014 * 27 18 17 45 45 H 1.09004 * 117.49442 * 0.02562 * 27 18 17 46 46 H 1.09001 * 117.49655 * 359.97438 * 28 18 17 47 47 H 1.08996 * 117.49542 * 144.97069 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.6322 -1.7317 1.2774 7 8 1.6238 -0.0071 2.4149 8 6 0.4817 -0.4264 3.0204 9 6 0.0267 0.2129 4.1645 10 6 -1.1375 -0.2119 4.7750 11 6 -1.8433 -1.2801 4.2528 12 6 -1.3889 -1.9226 3.1160 13 6 -0.2282 -1.4981 2.4986 14 6 3.5451 -0.7879 1.2116 15 8 4.1978 -0.1565 2.0087 16 8 4.1605 -1.5485 0.2927 17 6 5.6051 -1.6589 0.3888 18 6 6.1337 -2.4756 -0.7922 19 6 7.6338 -2.5836 -0.8880 20 1 8.1103 -2.6421 -1.8555 21 6 8.3980 -2.6080 0.2593 22 7 9.6531 -2.2168 0.2219 23 14 7.6506 -3.1964 1.8670 24 1 7.1532 -2.0290 2.6383 25 1 6.5217 -4.1176 1.5802 26 1 8.6828 -3.9106 2.6606 27 6 5.3083 -3.6827 -1.2422 28 6 5.3446 -2.4166 -2.1016 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4423 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.6593 -1.5701 -1.2725 36 1 0.5800 1.0444 4.5752 37 1 -1.4941 0.2878 5.6635 38 1 -2.7509 -1.6133 4.7341 39 1 -1.9417 -2.7570 2.7103 40 1 0.1265 -2.0005 1.6109 41 1 5.8703 -2.1558 1.3219 42 1 6.0477 -0.6630 0.3688 43 1 10.1906 -2.2335 1.0291 44 1 5.8503 -4.5551 -1.6075 45 1 4.3885 -3.8948 -0.6971 46 1 4.4485 -1.7963 -2.1216 47 1 5.9104 -2.4555 -3.0324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849779283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:22 Heat of formation + Delta-G solvation = -120.984364 kcal Electronic energy + Delta-G solvation = -30311.113826 eV Core-core repulsion = 26232.546976 eV Total energy + Delta-G solvation = -4078.566850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.42410 -41.11715 -39.32631 -38.73573 -37.97579 -36.94303 -34.47222 -33.49375 -31.95797 -31.22695 -30.04968 -28.87019 -28.42882 -27.08911 -23.86730 -23.37939 -23.03203 -22.82739 -21.30419 -21.08436 -19.70304 -19.20257 -18.71092 -18.39224 -17.75614 -17.45004 -16.96473 -16.68679 -16.42682 -16.32763 -15.72189 -15.40025 -15.14355 -15.07345 -14.85214 -14.68378 -14.43515 -14.34157 -13.79339 -13.63726 -13.40638 -13.26714 -13.13387 -13.05124 -13.01876 -12.86364 -12.71651 -12.48790 -12.36969 -12.08902 -12.04501 -11.92219 -11.86591 -11.57934 -11.49982 -11.13852 -11.01292 -10.60515 -10.31353 -9.95573 -9.23232 -8.52703 -6.37657 0.36467 0.42527 0.88106 0.99018 1.16824 1.24183 1.33853 2.16697 2.21670 2.67686 2.80593 3.08043 3.18320 3.36262 3.38605 3.45684 3.83216 3.87163 3.92961 3.94756 4.00543 4.01840 4.16222 4.28720 4.42584 4.48261 4.51742 4.62271 4.65564 4.69396 4.75310 4.77947 4.87094 5.00102 5.03820 5.06577 5.11708 5.17584 5.22614 5.30303 5.35805 5.46104 5.58644 5.59550 5.60854 5.76851 6.18474 6.25379 6.51136 6.57969 6.79028 7.15855 8.63660 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.003625 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.142969 B = 7721.964609 C = 8458.948156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 C -0.142 4.142 4 O -0.546 6.546 5 C 0.074 3.926 6 H 0.141 0.859 7 O -0.300 6.300 8 C 0.100 3.900 9 C -0.168 4.168 10 C -0.082 4.082 11 C -0.157 4.157 12 C -0.079 4.079 13 C -0.215 4.215 14 C 0.454 3.546 15 O -0.534 6.534 16 O -0.322 6.322 17 C 0.110 3.890 18 C -0.030 4.030 19 C -0.499 4.499 20 H 0.051 0.949 21 C 0.038 3.962 22 N -0.914 5.914 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.239 1.239 26 H -0.281 1.281 27 C -0.177 4.177 28 C -0.155 4.155 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.396 0.604 36 H 0.125 0.875 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.271 0.729 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.368 1.015 4.777 30.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.087 3.913 3 C -0.199 4.199 4 O -0.354 6.354 5 C 0.016 3.984 6 H 0.158 0.842 7 O -0.214 6.214 8 C 0.056 3.944 9 C -0.187 4.187 10 C -0.099 4.099 11 C -0.175 4.175 12 C -0.096 4.096 13 C -0.233 4.233 14 C 0.297 3.703 15 O -0.423 6.423 16 O -0.238 6.238 17 C 0.036 3.964 18 C -0.031 4.031 19 C -0.536 4.536 20 H 0.070 0.930 21 C -0.164 4.164 22 N -0.551 5.551 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.162 1.162 26 H -0.207 1.207 27 C -0.215 4.215 28 C -0.192 4.192 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.247 0.753 36 H 0.143 0.857 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.172 0.828 40 H 0.162 0.838 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.126 0.874 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -29.493 1.933 5.039 29.983 hybrid contribution 0.927 -0.467 1.030 1.462 sum -28.566 1.466 6.069 29.240 Atomic orbital electron populations 1.22605 0.91087 1.04742 1.04213 1.21423 0.95415 0.92610 0.81858 1.21785 1.00125 0.94203 1.03833 1.86725 1.73696 1.33515 1.41508 1.22797 0.86483 1.00970 0.88153 0.84200 1.86176 1.40227 1.54630 1.40384 1.19371 0.85950 0.95372 0.93672 1.20663 0.99393 1.03115 0.95507 1.21297 0.92768 0.96373 0.99511 1.21494 1.01729 0.96893 0.97341 1.21325 0.94458 0.99143 0.94710 1.21536 0.98957 0.98864 1.03974 1.23924 0.92343 0.76226 0.77758 1.90678 1.68231 1.43044 1.40354 1.86431 1.23552 1.63148 1.50649 1.22798 0.75120 0.99667 0.98782 1.19160 0.91987 0.98971 0.92974 1.20382 0.88321 1.51459 0.93448 0.93041 1.25601 0.95146 0.93961 1.01703 1.70131 1.10480 1.43663 1.30817 0.86434 0.79495 0.79642 0.80683 1.21233 1.16245 1.20703 1.23104 1.01538 0.92200 1.04629 1.22815 1.01657 1.01196 0.93571 0.91314 0.89551 0.89238 0.95258 0.89545 0.90191 0.75334 0.85731 0.83110 0.83202 0.82841 0.83754 0.93684 0.93259 0.91925 0.89901 0.88415 0.87442 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 7.30 71.98 0.53 -1.74 16 2 C 0.13 2.70 0.92 -10.79 -0.01 2.69 16 3 C -0.14 -3.58 8.46 71.98 0.61 -2.97 16 4 O -0.55 -11.69 11.78 -134.64 -1.59 -13.28 16 5 C 0.07 1.89 2.14 29.85 0.06 1.95 16 6 H 0.14 2.64 5.42 -2.39 -0.01 2.62 16 7 O -0.30 -8.22 8.36 -73.41 -0.61 -8.83 16 8 C 0.10 2.16 5.37 22.51 0.12 2.28 16 9 C -0.17 -3.31 9.99 22.37 0.22 -3.08 16 10 C -0.08 -1.14 10.04 22.26 0.22 -0.91 16 11 C -0.16 -1.79 10.04 22.28 0.22 -1.57 16 12 C -0.08 -0.92 10.04 22.25 0.22 -0.70 16 13 C -0.22 -3.35 7.16 22.37 0.16 -3.19 16 14 C 0.45 16.88 6.05 71.24 0.43 17.31 16 15 O -0.53 -24.49 16.19 28.36 0.46 -24.03 16 16 O -0.32 -12.37 7.52 -46.18 -0.35 -12.72 16 17 C 0.11 5.17 4.58 71.98 0.33 5.50 16 18 C -0.03 -1.43 1.83 -52.93 -0.10 -1.52 16 19 C -0.50 -28.72 9.48 25.60 0.24 -28.47 16 20 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 21 C 0.04 2.20 5.30 84.65 0.45 2.65 16 22 N -0.91 -56.80 13.96 21.45 0.30 -56.50 16 23 Si 0.91 45.72 24.47 68.60 1.68 47.40 16 24 H -0.28 -14.73 6.80 99.48 0.68 -14.05 16 25 H -0.24 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 27 C -0.18 -6.95 9.66 30.62 0.30 -6.66 16 28 C -0.16 -6.15 9.63 30.62 0.29 -5.86 16 29 H 0.07 1.03 6.35 -2.39 -0.02 1.01 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 0.75 6.62 -2.39 -0.02 0.74 16 32 H 0.03 0.93 7.32 -2.39 -0.02 0.91 16 33 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.08 1.94 7.60 -2.39 -0.02 1.92 16 35 H 0.40 5.03 9.03 -74.06 -0.67 4.36 16 36 H 0.12 2.50 8.06 -2.91 -0.02 2.47 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.15 1.71 4.45 -2.91 -0.01 1.69 16 41 H 0.05 2.25 3.25 -2.39 -0.01 2.24 16 42 H 0.05 2.55 7.99 -2.39 -0.02 2.53 16 43 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 45 H 0.10 3.31 7.81 -2.38 -0.02 3.29 16 46 H 0.11 3.83 7.51 -2.39 -0.02 3.81 16 47 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -76.07 375.80 4.50 -71.57 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.30 Total: 20.67 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 4.31 Total: -24.28 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.30 Total: -56.50 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -2.09 Total: -58.86 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.68 Total: 47.40 kcal Total: -76.07 4.50 -71.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849779283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.413 kcal (2) G-P(sol) polarization free energy of solvation -76.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds