Wall clock time and date at job start Tue Mar 31 2020 20:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47134 * 2 1 4 4 C 1.42901 * 114.00106 * 184.98263 * 3 2 1 5 5 H 1.09001 * 109.46947 * 325.17599 * 4 3 2 6 6 C 1.52998 * 109.47046 * 85.17365 * 4 3 2 7 7 O 1.45200 * 109.47095 * 65.00162 * 6 4 3 8 8 C 1.34226 * 117.00142 * 179.97438 * 7 6 4 9 9 O 1.20823 * 120.00145 * 359.97438 * 8 7 6 10 10 C 1.50707 * 120.00101 * 180.02562 * 8 7 6 11 11 C 1.50697 * 109.46981 * 180.02562 * 10 8 7 12 12 C 1.38322 * 119.96303 * 269.71996 * 11 10 8 13 13 C 1.38284 * 120.13962 * 179.77032 * 12 11 10 14 14 C 1.38122 * 120.06817 * 0.50662 * 13 12 11 15 15 C 1.38860 * 119.92812 * 359.74801 * 14 13 12 16 16 O 1.35753 * 120.06873 * 179.97438 * 15 14 13 17 17 C 1.34829 * 116.99890 * 354.45217 * 16 15 14 18 18 H 1.07997 * 119.99920 * 5.05973 * 17 16 15 19 19 C 1.38655 * 119.99787 * 185.06473 * 17 16 15 20 20 N 1.31558 * 119.99854 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00288 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47295 * 90.00105 * 21 19 17 23 23 H 1.48498 * 109.47198 * 210.00303 * 21 19 17 24 24 H 1.48504 * 109.47115 * 330.00258 * 21 19 17 25 25 C 1.38075 * 119.97216 * 89.99971 * 11 10 8 26 26 C 1.53003 * 109.47273 * 205.17461 * 4 3 2 27 27 C 1.52993 * 117.49737 * 133.62155 * 26 4 3 28 28 C 1.53004 * 117.49700 * 64.96008 * 26 4 3 29 29 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46954 * 299.99305 * 1 2 3 31 31 H 1.08997 * 109.47486 * 59.99579 * 1 2 3 32 32 H 1.09002 * 109.46646 * 239.99995 * 2 1 3 33 33 H 1.08997 * 109.47486 * 120.00421 * 2 1 3 34 34 H 1.08995 * 109.47696 * 305.00257 * 6 4 3 35 35 H 1.09000 * 109.46860 * 184.99861 * 6 4 3 36 36 H 1.09002 * 109.46746 * 299.99519 * 10 8 7 37 37 H 1.09004 * 109.47257 * 59.99734 * 10 8 7 38 38 H 1.07999 * 119.93079 * 359.97438 * 12 11 10 39 39 H 1.08005 * 119.96942 * 180.25798 * 13 12 11 40 40 H 1.07994 * 120.03707 * 179.77006 * 14 13 12 41 41 H 0.97004 * 120.00118 * 179.97438 * 20 19 17 42 42 H 1.08008 * 120.03204 * 359.95000 * 25 11 10 43 43 H 1.08996 * 115.55069 * 279.29419 * 26 4 3 44 44 H 1.09004 * 117.50482 * 0.02562 * 27 26 4 45 45 H 1.09005 * 117.49861 * 145.02489 * 27 26 4 46 46 H 1.08999 * 117.50202 * 214.97623 * 28 26 4 47 47 H 1.09001 * 117.50028 * 0.02562 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4262 1.4617 -0.1134 5 1 3.9007 0.6333 0.4126 6 6 3.8247 1.4233 -1.5901 7 8 3.2899 2.5917 -2.2662 8 6 3.5519 2.7102 -3.5773 9 8 4.2069 1.8659 -4.1413 10 6 3.0302 3.8970 -4.3458 11 6 3.4601 3.7911 -5.7863 12 6 4.6567 4.3531 -6.1932 13 6 5.0570 4.2539 -7.5131 14 6 4.2575 3.6021 -8.4317 15 6 3.0532 3.0415 -8.0273 16 8 2.2649 2.4006 -8.9278 17 6 2.6515 2.4426 -10.2188 18 1 3.5933 2.8987 -10.4859 19 6 1.8398 1.9003 -11.2035 20 7 2.2172 1.9408 -12.4631 21 14 0.2111 1.1109 -10.7414 22 1 -0.8621 2.1368 -10.7704 23 1 -0.1088 0.0323 -11.7107 24 1 0.3095 0.5359 -9.3757 25 6 2.6564 3.1383 -6.6997 26 6 3.8821 2.7856 0.5036 27 6 5.0858 2.7478 1.4471 28 6 3.6793 2.9704 2.0088 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.4232 0.5211 -2.0514 35 1 4.9115 1.4211 -1.6732 36 1 1.9416 3.9144 -4.2923 37 1 3.4300 4.8142 -3.9134 38 1 5.2813 4.8675 -5.4779 39 1 5.9938 4.6901 -7.8270 40 1 4.5689 3.5282 -9.4631 41 1 1.6496 1.5610 -13.1520 42 1 1.7204 2.7029 -6.3822 43 1 3.7675 3.6642 -0.1312 44 1 5.5534 1.7799 1.6281 45 1 5.7631 3.6018 1.4334 46 1 3.4319 3.9706 2.3643 47 1 3.2216 2.1487 2.5596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859615867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:12 Heat of formation + Delta-G solvation = -111.712069 kcal Electronic energy + Delta-G solvation = -28004.704647 eV Core-core repulsion = 23926.539874 eV Total energy + Delta-G solvation = -4078.164773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.57023 -39.32699 -38.92648 -36.93944 -36.81276 -36.08115 -32.51489 -32.27542 -31.84823 -29.92214 -29.43079 -27.37132 -25.19855 -24.37170 -23.01325 -22.64570 -22.08121 -21.58335 -20.69513 -20.15233 -17.76917 -17.72820 -17.23963 -17.23339 -16.68395 -16.37196 -15.60397 -15.42681 -15.20461 -15.17654 -14.80264 -14.10360 -13.81303 -13.67605 -13.60390 -13.54939 -13.19656 -12.93019 -12.68382 -12.54213 -12.43743 -12.19233 -11.95013 -11.87402 -11.78986 -11.70021 -11.34266 -11.27273 -10.88219 -10.81708 -10.75240 -10.72737 -10.70113 -10.49999 -10.34936 -10.15474 -9.84356 -9.39006 -8.86292 -8.19427 -7.37373 -6.39974 -4.06791 1.89447 2.26072 2.35209 2.73678 3.07173 3.23365 3.26553 3.42032 3.69764 4.17970 4.25295 4.34133 4.45863 4.59171 4.66354 4.69423 4.72539 4.77764 4.88344 4.94749 4.98871 5.02646 5.09086 5.12898 5.19055 5.27651 5.32349 5.40625 5.46145 5.55030 5.55273 5.61255 5.67840 5.74539 5.82141 5.83478 5.91170 6.10274 6.23547 6.41015 6.52793 6.77205 6.87648 7.07089 7.18454 7.30247 7.58985 7.81149 7.88499 8.04992 8.95367 9.57808 10.67721 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.002416 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.217791 B =11585.905320 C =13084.593302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.367 6.367 4 C 0.125 3.875 5 H 0.079 0.921 6 C 0.047 3.953 7 O -0.347 6.347 8 C 0.458 3.542 9 O -0.493 6.493 10 C -0.064 4.064 11 C -0.045 4.045 12 C -0.186 4.186 13 C -0.076 4.076 14 C -0.215 4.215 15 C 0.160 3.840 16 O -0.218 6.218 17 C -0.389 4.389 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.172 4.172 26 C -0.149 4.149 27 C -0.176 4.176 28 C -0.166 4.166 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.279 0.721 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 0.752 28.528 28.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.286 6.286 4 C 0.067 3.933 5 H 0.097 0.903 6 C -0.028 4.028 7 O -0.264 6.264 8 C 0.300 3.700 9 O -0.378 6.378 10 C -0.101 4.101 11 C -0.046 4.046 12 C -0.205 4.205 13 C -0.094 4.094 14 C -0.234 4.234 15 C 0.108 3.892 16 O -0.123 6.123 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.192 4.192 26 C -0.168 4.168 27 C -0.213 4.213 28 C -0.203 4.203 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.112 0.888 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.633 0.423 28.174 28.224 hybrid contribution -0.264 -0.788 -0.216 0.859 sum 1.370 -0.365 27.958 27.994 Atomic orbital electron populations 1.21726 0.93421 1.02290 1.03348 1.22569 0.96069 0.83947 0.99909 1.88044 1.20220 1.26146 1.94195 1.21713 0.82664 0.96854 0.92081 0.90340 1.23527 0.99339 0.87461 0.92438 1.86541 1.71254 1.44952 1.23649 1.23869 0.77815 0.87887 0.80444 1.90717 1.36049 1.41678 1.69389 1.20248 1.03302 0.94826 0.91746 1.18671 0.95206 0.98984 0.91701 1.20443 0.97232 1.06670 0.96170 1.20748 0.98279 0.97470 0.92898 1.21325 0.96192 1.04700 1.01151 1.18995 0.90047 0.90716 0.89441 1.83571 1.47116 1.64025 1.17615 1.20764 1.07281 1.40254 0.78151 0.87623 1.24459 0.99142 0.96587 0.93818 1.69648 1.38548 1.44234 0.99396 0.86187 0.82314 0.79224 0.79224 1.19862 1.20794 1.18380 1.19965 1.01659 1.06334 0.91209 1.22189 1.02624 0.98711 0.93235 1.23061 0.91256 1.03447 1.03556 1.22853 0.98755 1.03200 0.95500 0.91121 0.91822 0.91569 0.93359 0.93444 0.91059 0.90261 0.87056 0.87125 0.87536 0.87021 0.84876 0.91080 0.86658 0.86216 0.88785 0.88233 0.88521 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.42 6.45 37.16 0.24 0.66 16 3 O -0.37 -3.77 9.95 -38.80 -0.39 -4.15 16 4 C 0.12 1.10 2.67 -26.73 -0.07 1.03 16 5 H 0.08 0.54 7.69 -51.93 -0.40 0.14 16 6 C 0.05 0.51 5.24 37.16 0.19 0.70 16 7 O -0.35 -4.40 9.25 -42.01 -0.39 -4.79 16 8 C 0.46 6.73 7.95 36.01 0.29 7.02 16 9 O -0.49 -9.06 15.78 -18.75 -0.30 -9.36 16 10 C -0.06 -0.84 5.94 -29.03 -0.17 -1.01 16 11 C -0.05 -0.79 4.37 -104.65 -0.46 -1.25 16 12 C -0.19 -3.20 9.70 -39.53 -0.38 -3.59 16 13 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 14 C -0.21 -4.76 9.17 -39.39 -0.36 -5.12 16 15 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 16 O -0.22 -5.88 8.59 0.04 0.00 -5.88 16 17 C -0.39 -11.13 9.95 30.89 0.31 -10.82 16 18 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 19 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 20 N -0.88 -25.68 13.96 55.48 0.77 -24.90 16 21 Si 0.90 21.98 28.62 -169.99 -4.86 17.12 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.17 -3.54 9.64 -39.40 -0.38 -3.92 16 26 C -0.15 -1.24 5.21 -90.62 -0.47 -1.71 16 27 C -0.18 -1.13 10.18 -26.69 -0.27 -1.40 16 28 C -0.17 -1.15 10.23 -26.69 -0.27 -1.42 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.39 7.35 -51.93 -0.38 0.01 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.81 7.36 -51.93 -0.38 0.42 16 35 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 36 H 0.11 1.26 8.08 -51.93 -0.42 0.84 16 37 H 0.11 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 40 H 0.13 3.07 5.64 -52.49 -0.30 2.77 16 41 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 43 H 0.12 1.12 7.43 -51.93 -0.39 0.73 16 44 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -32.92 399.39 -8.50 -41.43 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.17 Total: 2.66 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -2.19 Total: -18.14 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.77 Total: -24.90 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -1.07 Total: -24.19 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.86 Total: 17.12 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.92 -8.50 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859615867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.286 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds