Wall clock time and date at job start Tue Mar 31 2020 20:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47134 * 2 1 4 4 C 1.42901 * 114.00106 * 184.98263 * 3 2 1 5 5 H 1.09001 * 109.46947 * 325.17599 * 4 3 2 6 6 C 1.52998 * 109.47046 * 85.17365 * 4 3 2 7 7 O 1.45200 * 109.47095 * 65.00162 * 6 4 3 8 8 C 1.34226 * 117.00142 * 179.97438 * 7 6 4 9 9 O 1.20823 * 120.00145 * 359.97438 * 8 7 6 10 10 C 1.50707 * 120.00101 * 180.02562 * 8 7 6 11 11 C 1.50697 * 109.46981 * 180.02562 * 10 8 7 12 12 C 1.38322 * 119.96303 * 269.71996 * 11 10 8 13 13 C 1.38284 * 120.13962 * 179.77032 * 12 11 10 14 14 C 1.38122 * 120.06817 * 0.50662 * 13 12 11 15 15 C 1.38860 * 119.92812 * 359.74801 * 14 13 12 16 16 O 1.35753 * 120.06873 * 179.97438 * 15 14 13 17 17 C 1.34829 * 116.99890 * 354.45217 * 16 15 14 18 18 H 1.07997 * 119.99920 * 5.05973 * 17 16 15 19 19 C 1.38655 * 119.99787 * 185.06473 * 17 16 15 20 20 N 1.31558 * 119.99854 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00288 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47295 * 90.00105 * 21 19 17 23 23 H 1.48498 * 109.47198 * 210.00303 * 21 19 17 24 24 H 1.48504 * 109.47115 * 330.00258 * 21 19 17 25 25 C 1.38075 * 119.97216 * 89.99971 * 11 10 8 26 26 C 1.53003 * 109.47273 * 205.17461 * 4 3 2 27 27 C 1.52993 * 117.49737 * 133.62155 * 26 4 3 28 28 C 1.53004 * 117.49700 * 64.96008 * 26 4 3 29 29 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46954 * 299.99305 * 1 2 3 31 31 H 1.08997 * 109.47486 * 59.99579 * 1 2 3 32 32 H 1.09002 * 109.46646 * 239.99995 * 2 1 3 33 33 H 1.08997 * 109.47486 * 120.00421 * 2 1 3 34 34 H 1.08995 * 109.47696 * 305.00257 * 6 4 3 35 35 H 1.09000 * 109.46860 * 184.99861 * 6 4 3 36 36 H 1.09002 * 109.46746 * 299.99519 * 10 8 7 37 37 H 1.09004 * 109.47257 * 59.99734 * 10 8 7 38 38 H 1.07999 * 119.93079 * 359.97438 * 12 11 10 39 39 H 1.08005 * 119.96942 * 180.25798 * 13 12 11 40 40 H 1.07994 * 120.03707 * 179.77006 * 14 13 12 41 41 H 0.97004 * 120.00118 * 179.97438 * 20 19 17 42 42 H 1.08008 * 120.03204 * 359.95000 * 25 11 10 43 43 H 1.08996 * 115.55069 * 279.29419 * 26 4 3 44 44 H 1.09004 * 117.50482 * 0.02562 * 27 26 4 45 45 H 1.09005 * 117.49861 * 145.02489 * 27 26 4 46 46 H 1.08999 * 117.50202 * 214.97623 * 28 26 4 47 47 H 1.09001 * 117.50028 * 0.02562 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4262 1.4617 -0.1134 5 1 3.9007 0.6333 0.4126 6 6 3.8247 1.4233 -1.5901 7 8 3.2899 2.5917 -2.2662 8 6 3.5519 2.7102 -3.5773 9 8 4.2069 1.8659 -4.1413 10 6 3.0302 3.8970 -4.3458 11 6 3.4601 3.7911 -5.7863 12 6 4.6567 4.3531 -6.1932 13 6 5.0570 4.2539 -7.5131 14 6 4.2575 3.6021 -8.4317 15 6 3.0532 3.0415 -8.0273 16 8 2.2649 2.4006 -8.9278 17 6 2.6515 2.4426 -10.2188 18 1 3.5933 2.8987 -10.4859 19 6 1.8398 1.9003 -11.2035 20 7 2.2172 1.9408 -12.4631 21 14 0.2111 1.1109 -10.7414 22 1 -0.8621 2.1368 -10.7704 23 1 -0.1088 0.0323 -11.7107 24 1 0.3095 0.5359 -9.3757 25 6 2.6564 3.1383 -6.6997 26 6 3.8821 2.7856 0.5036 27 6 5.0858 2.7478 1.4471 28 6 3.6793 2.9704 2.0088 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.4232 0.5211 -2.0514 35 1 4.9115 1.4211 -1.6732 36 1 1.9416 3.9144 -4.2923 37 1 3.4300 4.8142 -3.9134 38 1 5.2813 4.8675 -5.4779 39 1 5.9938 4.6901 -7.8270 40 1 4.5689 3.5282 -9.4631 41 1 1.6496 1.5610 -13.1520 42 1 1.7204 2.7029 -6.3822 43 1 3.7675 3.6642 -0.1312 44 1 5.5534 1.7799 1.6281 45 1 5.7631 3.6018 1.4334 46 1 3.4319 3.9706 2.3643 47 1 3.2216 2.1487 2.5596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859615867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:11 Heat of formation + Delta-G solvation = -129.569302 kcal Electronic energy + Delta-G solvation = -28005.478995 eV Core-core repulsion = 23926.539874 eV Total energy + Delta-G solvation = -4078.939121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69390 -40.83809 -39.85232 -38.51699 -37.41707 -37.26159 -34.50073 -33.72232 -32.53929 -31.17916 -30.64342 -28.70463 -27.21332 -25.12618 -23.82697 -23.38844 -23.13540 -22.95038 -21.82935 -21.18613 -19.68297 -18.93220 -18.77999 -18.05972 -17.65811 -17.37109 -16.88652 -16.55820 -16.29272 -16.17315 -15.91627 -15.75842 -15.61871 -15.12323 -14.63254 -14.41896 -14.29850 -14.18098 -14.02503 -13.92203 -13.74528 -13.27430 -13.05853 -12.94098 -12.61060 -12.54607 -12.47976 -12.39314 -12.38581 -12.35575 -11.95635 -11.92893 -11.68824 -11.54765 -11.33884 -11.27318 -11.06258 -10.92521 -10.53654 -9.75061 -9.10949 -8.51528 -6.24380 0.37781 0.65878 1.21819 1.28975 1.33145 1.49904 1.70677 2.26547 2.43962 2.75964 3.00276 3.11644 3.12959 3.54559 3.61968 3.70778 3.89180 4.03573 4.08928 4.11551 4.13852 4.20847 4.24185 4.28446 4.30485 4.37371 4.38928 4.48840 4.50370 4.59829 4.67074 4.71750 4.82097 4.87482 4.91656 5.01042 5.06644 5.18252 5.25008 5.28019 5.30741 5.35995 5.41199 5.59746 5.67690 5.73876 5.88919 6.20891 6.23100 6.77473 6.82661 7.56886 8.60118 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.002416 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.217791 B =11585.905320 C =13084.593302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.387 6.387 4 C 0.128 3.872 5 H 0.101 0.899 6 C 0.042 3.958 7 O -0.341 6.341 8 C 0.464 3.536 9 O -0.537 6.537 10 C -0.061 4.061 11 C -0.039 4.039 12 C -0.167 4.167 13 C -0.076 4.076 14 C -0.236 4.236 15 C 0.119 3.881 16 O -0.246 6.246 17 C -0.400 4.400 18 H 0.081 0.919 19 C 0.010 3.990 20 N -0.922 5.922 21 Si 0.970 3.030 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.267 1.267 25 C -0.179 4.179 26 C -0.167 4.167 27 C -0.164 4.164 28 C -0.165 4.165 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.109 0.891 41 H 0.285 0.715 42 H 0.122 0.878 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 1.529 32.448 32.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.306 6.306 4 C 0.071 3.929 5 H 0.118 0.882 6 C -0.032 4.032 7 O -0.258 6.258 8 C 0.308 3.692 9 O -0.427 6.427 10 C -0.098 4.098 11 C -0.039 4.039 12 C -0.185 4.185 13 C -0.094 4.094 14 C -0.255 4.255 15 C 0.070 3.930 16 O -0.154 6.154 17 C -0.476 4.476 18 H 0.099 0.901 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.792 3.208 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.192 1.192 25 C -0.198 4.198 26 C -0.185 4.185 27 C -0.201 4.201 28 C -0.202 4.202 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.151 0.849 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.162 0.838 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.140 0.860 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.769 1.230 32.145 32.217 hybrid contribution -0.119 -0.897 -1.130 1.447 sum 1.650 0.333 31.015 31.061 Atomic orbital electron populations 1.21745 0.93151 1.03158 1.02662 1.22720 0.96395 0.83332 1.00618 1.88024 1.21052 1.27364 1.94182 1.21791 0.82312 0.98091 0.90750 0.88173 1.23760 0.99639 0.86347 0.93494 1.86540 1.70911 1.45645 1.22660 1.24079 0.76735 0.87499 0.80892 1.90718 1.38316 1.43338 1.70289 1.20371 1.04892 0.95931 0.88610 1.19144 0.94484 0.96683 0.93570 1.21046 0.96931 1.04418 0.96080 1.21136 0.98847 0.96352 0.93076 1.21368 0.96818 1.06251 1.01057 1.19563 0.90838 0.92243 0.90338 1.83511 1.48396 1.66551 1.16965 1.20716 1.06803 1.40516 0.79586 0.90108 1.25274 1.02633 0.97255 0.93685 1.69728 1.40205 1.46066 1.00315 0.85228 0.78173 0.78779 0.78582 1.18716 1.19065 1.19169 1.20280 1.02661 1.06570 0.90320 1.22146 1.04628 0.97920 0.93829 1.23157 0.90909 1.04377 1.01664 1.22910 0.99282 1.03605 0.94364 0.89538 0.91578 0.93114 0.93816 0.91498 0.92034 0.89715 0.84871 0.82860 0.83028 0.83845 0.87275 0.90544 0.85970 0.87470 0.87653 0.87505 0.88107 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.66 6.45 71.98 0.46 1.13 16 3 O -0.39 -7.27 9.95 -145.57 -1.45 -8.72 16 4 C 0.13 2.00 2.67 30.59 0.08 2.08 16 5 H 0.10 1.11 7.69 -2.39 -0.02 1.09 16 6 C 0.04 0.84 5.24 71.98 0.38 1.21 16 7 O -0.34 -7.88 9.25 -48.74 -0.45 -8.33 16 8 C 0.46 12.41 7.95 71.24 0.57 12.98 16 9 O -0.54 -18.95 15.78 21.97 0.35 -18.61 16 10 C -0.06 -1.36 5.94 29.10 0.17 -1.19 16 11 C -0.04 -1.23 4.37 -19.88 -0.09 -1.32 16 12 C -0.17 -5.10 9.70 22.30 0.22 -4.89 16 13 C -0.08 -2.71 10.04 22.25 0.22 -2.49 16 14 C -0.24 -10.80 9.17 22.39 0.21 -10.60 16 15 C 0.12 5.85 6.65 22.58 0.15 6.00 16 16 O -0.25 -13.96 8.59 -22.76 -0.20 -14.15 16 17 C -0.40 -24.29 9.95 67.92 0.68 -23.62 16 18 H 0.08 5.12 5.44 -2.91 -0.02 5.11 16 19 C 0.01 0.58 5.49 84.83 0.47 1.05 16 20 N -0.92 -56.10 13.96 21.61 0.30 -55.80 16 21 Si 0.97 46.64 28.62 68.60 1.96 48.61 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 25 C -0.18 -7.27 9.64 22.39 0.22 -7.05 16 26 C -0.17 -2.38 5.21 -10.79 -0.06 -2.44 16 27 C -0.16 -1.62 10.18 30.62 0.31 -1.31 16 28 C -0.16 -1.87 10.23 30.62 0.31 -1.56 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.04 0.67 7.35 -2.39 -0.02 0.65 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.34 7.36 -2.39 -0.02 1.33 16 35 H 0.08 1.59 8.13 -2.39 -0.02 1.57 16 36 H 0.13 2.48 8.08 -2.39 -0.02 2.46 16 37 H 0.15 2.18 8.08 -2.39 -0.02 2.16 16 38 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 39 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 40 H 0.11 5.45 5.64 -2.91 -0.02 5.43 16 41 H 0.28 15.86 8.31 -92.71 -0.77 15.08 16 42 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 43 H 0.11 1.78 7.43 -2.39 -0.02 1.76 16 44 H 0.11 0.81 8.08 -2.38 -0.02 0.79 16 45 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -75.94 399.39 6.52 -69.42 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.96 Total: 20.86 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 5.04 Total: -33.30 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.30 Total: -55.80 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -1.75 Total: -49.80 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.96 Total: 48.61 kcal Total: -75.94 6.52 -69.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859615867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.147 kcal (2) G-P(sol) polarization free energy of solvation -75.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds