Wall clock time and date at job start Tue Mar 31 2020 23:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00010 * 2 1 4 4 H 1.48496 * 109.47459 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47152 * 300.00383 * 3 2 1 6 6 H 1.48498 * 109.47121 * 60.00231 * 3 2 1 7 7 C 1.38653 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99986 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99918 * 185.05638 * 9 7 2 11 11 C 1.38884 * 120.07070 * 354.47066 * 10 9 7 12 12 C 1.38096 * 119.93484 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06567 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.93088 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47167 * 89.99794 * 14 13 12 16 16 O 1.21279 * 119.99540 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99940 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99721 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47115 * 179.97438 * 18 17 15 20 20 N 1.46901 * 109.47237 * 179.97438 * 19 18 17 21 21 C 1.47840 * 111.00354 * 290.84533 * 20 19 18 22 22 C 1.54900 * 104.80125 * 213.63417 * 21 20 19 23 23 C 1.55139 * 101.64977 * 37.06943 * 22 21 20 24 24 H 1.08997 * 110.70823 * 82.73347 * 23 22 21 25 25 O 1.42907 * 110.70885 * 205.96777 * 23 22 21 26 26 C 1.47447 * 111.00173 * 170.00072 * 20 19 18 27 27 C 1.38303 * 120.13822 * 0.27669 * 13 12 11 28 28 C 1.38092 * 120.07112 * 359.49035 * 27 13 12 29 29 H 0.96996 * 119.99926 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03192 * 359.95417 * 11 10 9 31 31 H 1.07999 * 119.96749 * 179.97438 * 12 11 10 32 32 H 1.09008 * 109.47144 * 330.00507 * 14 13 12 33 33 H 1.08995 * 109.47351 * 210.00195 * 14 13 12 34 34 H 0.96995 * 120.00299 * 0.02562 * 17 15 14 35 35 H 1.08998 * 109.47309 * 60.00495 * 18 17 15 36 36 H 1.08995 * 109.47196 * 300.00195 * 18 17 15 37 37 H 1.08995 * 109.47268 * 300.00176 * 19 18 17 38 38 H 1.09008 * 109.47060 * 60.00385 * 19 18 17 39 39 H 1.09002 * 110.37132 * 332.46872 * 21 20 19 40 40 H 1.09007 * 110.37524 * 94.80539 * 21 20 19 41 41 H 1.08998 * 110.99171 * 278.97885 * 22 21 20 42 42 H 1.08998 * 111.02764 * 155.17560 * 22 21 20 43 43 H 0.96706 * 113.99293 * 293.60016 * 25 23 22 44 44 H 1.08995 * 109.88792 * 242.66803 * 26 20 19 45 45 H 1.08997 * 109.88693 * 3.85382 * 26 20 19 46 46 H 1.08005 * 119.96300 * 179.71934 * 27 13 12 47 47 H 1.08000 * 120.03968 * 180.25701 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4572 -3.4395 0.0922 12 6 4.2025 -4.5970 0.2008 13 6 3.5687 -5.8202 0.3233 14 6 4.3849 -7.0815 0.4411 15 6 4.6654 -7.3646 1.8945 16 8 4.2435 -6.6160 2.7504 17 7 5.3840 -8.4500 2.2431 18 6 5.6561 -8.7255 3.6561 19 6 6.4839 -10.0067 3.7757 20 7 6.7572 -10.2825 5.1925 21 6 7.6911 -9.2846 5.7560 22 6 8.5293 -10.0697 6.7955 23 6 8.6922 -11.4434 6.0933 24 1 9.5147 -11.4159 5.3787 25 8 8.8910 -12.4819 7.0547 26 6 7.3432 -11.6244 5.3660 27 6 2.1874 -5.8888 0.3317 28 6 1.4366 -4.7345 0.2283 29 1 -0.4850 0.8400 0.0004 30 1 3.9527 -2.4846 -0.0034 31 1 5.2812 -4.5471 0.1900 32 1 5.3270 -6.9559 -0.0929 33 1 3.8307 -7.9146 0.0090 34 1 5.7211 -9.0489 1.5586 35 1 4.7141 -8.8509 4.1898 36 1 6.2106 -7.8926 4.0884 37 1 5.9291 -10.8394 3.3435 38 1 7.4261 -9.8817 3.2419 39 1 8.3355 -8.8836 4.9736 40 1 7.1390 -8.4807 6.2430 41 1 7.9877 -10.1735 7.7357 42 1 9.4977 -9.5957 6.9555 43 1 9.7249 -12.4144 7.5398 44 1 6.6782 -12.2445 5.9670 45 1 7.5059 -12.0867 4.3925 46 1 1.6954 -6.8460 0.4230 47 1 0.3580 -4.7883 0.2391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863322712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:06 Heat of formation + Delta-G solvation = -80.827649 kcal Electronic energy + Delta-G solvation = -27120.937249 eV Core-core repulsion = 23076.404476 eV Total energy + Delta-G solvation = -4044.532773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 12.54 seconds Orbital eigenvalues (eV) -40.06750 -39.57792 -38.72147 -36.86374 -36.41627 -34.85185 -32.46632 -31.98984 -31.16846 -30.09434 -29.40204 -27.87439 -26.28099 -25.03177 -23.26044 -21.91629 -21.72830 -21.24624 -21.00986 -19.98304 -18.23345 -17.92637 -17.10672 -16.91546 -16.49081 -16.02911 -15.82319 -15.14672 -14.94712 -14.58778 -14.51864 -14.32885 -14.26472 -13.87500 -13.66068 -13.52790 -13.42106 -13.21100 -12.97519 -12.65412 -12.48246 -12.27865 -12.10678 -11.83043 -11.79627 -11.56164 -11.39652 -11.31220 -11.23041 -10.80909 -10.70935 -10.55170 -10.52139 -10.38161 -9.69764 -9.26930 -9.13018 -8.89069 -8.77669 -8.09157 -7.10637 -6.39967 -3.98370 2.30107 2.31390 2.81542 2.93639 3.15647 3.17353 3.22701 3.53169 3.66532 4.01114 4.07136 4.15146 4.44766 4.50011 4.60096 4.65114 4.75044 4.92585 5.00990 5.03253 5.04606 5.13555 5.24023 5.30150 5.36328 5.37576 5.40602 5.50310 5.56683 5.61125 5.69797 5.75749 5.78889 5.90793 6.27430 6.28796 6.36921 6.47756 6.51056 6.76203 6.97351 7.04402 7.11253 7.29733 7.42676 7.46419 7.51165 7.89960 8.05585 8.35879 9.05930 9.77019 10.78351 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.001665 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.144979 B =16809.948227 C =17543.812898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.233 4.233 12 C -0.057 4.057 13 C -0.170 4.170 14 C -0.079 4.079 15 C 0.509 3.491 16 O -0.517 6.517 17 N -0.742 5.742 18 C 0.124 3.876 19 C 0.040 3.960 20 N -0.521 5.521 21 C 0.039 3.961 22 C -0.163 4.163 23 C 0.082 3.918 24 H 0.064 0.936 25 O -0.559 6.559 26 C 0.050 3.950 27 C -0.060 4.060 28 C -0.191 4.191 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.397 0.603 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.381 0.619 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.108 0.892 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.569 -23.566 7.428 31.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.083 6.083 10 C 0.103 3.897 11 C -0.252 4.252 12 C -0.075 4.075 13 C -0.172 4.172 14 C -0.119 4.119 15 C 0.295 3.705 16 O -0.391 6.391 17 N -0.397 5.397 18 C 0.000 4.000 19 C -0.089 4.089 20 N -0.246 5.246 21 C -0.088 4.088 22 C -0.202 4.202 23 C 0.021 3.979 24 H 0.082 0.918 25 O -0.364 6.364 26 C -0.078 4.078 27 C -0.078 4.078 28 C -0.210 4.210 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.230 0.770 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.228 0.772 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.126 0.874 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.750 -22.941 8.079 30.110 hybrid contribution 2.069 0.704 -0.504 2.242 sum 19.819 -22.237 7.575 30.735 Atomic orbital electron populations 1.70051 1.05934 1.27463 1.46405 1.25283 0.95841 0.98799 0.96655 0.85648 0.79131 0.80444 0.78196 1.19138 1.20191 1.20166 1.21377 0.91824 0.80858 1.52594 0.89045 1.83976 1.34359 1.11454 1.78464 1.19385 0.90290 0.88031 0.92011 1.21105 0.93819 0.98754 1.11507 1.20499 0.97993 0.91791 0.97227 1.18637 0.93231 0.92795 1.12502 1.20403 1.01164 0.98114 0.92198 1.21055 0.77289 0.79913 0.92200 1.90758 1.49517 1.46729 1.52094 1.46005 1.57358 1.28331 1.08015 1.21146 1.00357 0.95956 0.82590 1.22503 0.99116 0.98456 0.88781 1.63501 1.43526 1.01826 1.15778 1.23075 0.93493 0.95451 0.96798 1.23437 1.00783 0.95884 1.00053 1.23049 0.97630 0.86741 0.90441 0.91818 1.86510 1.44543 1.50227 1.55154 1.22728 0.93925 0.91211 0.99913 1.20404 0.92766 0.96730 0.97892 1.20158 0.99501 0.90293 1.11089 0.92137 0.85604 0.87879 0.89074 0.88955 0.77006 0.90616 0.91700 0.89883 0.93944 0.92974 0.89263 0.89424 0.90442 0.77174 0.88946 0.91835 0.87359 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.04 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.39 -11.24 9.49 30.89 0.29 -10.94 16 8 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 9 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 10 C 0.16 3.96 6.65 -39.10 -0.26 3.70 16 11 C -0.23 -5.31 9.17 -39.39 -0.36 -5.68 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 13 C -0.17 -3.02 4.38 -104.58 -0.46 -3.48 16 14 C -0.08 -0.98 5.83 -29.03 -0.17 -1.15 16 15 C 0.51 7.05 7.82 -10.98 -0.09 6.96 16 16 O -0.52 -9.98 16.03 5.56 0.09 -9.89 16 17 N -0.74 -7.05 5.56 -60.29 -0.33 -7.39 16 18 C 0.12 1.18 5.72 -4.04 -0.02 1.16 16 19 C 0.04 0.27 4.68 -3.82 -0.02 0.25 16 20 N -0.52 -3.94 5.16 -231.25 -1.19 -5.13 16 21 C 0.04 0.26 5.78 -2.30 -0.01 0.25 16 22 C -0.16 -0.89 6.80 -24.60 -0.17 -1.06 16 23 C 0.08 0.46 4.32 -24.91 -0.11 0.35 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 O -0.56 -3.44 13.39 -35.23 -0.47 -3.91 16 26 C 0.05 0.34 6.64 -2.84 -0.02 0.32 16 27 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 28 C -0.19 -4.27 9.99 -39.40 -0.39 -4.66 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 31 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.09 0.91 8.08 -51.92 -0.42 0.49 16 33 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.40 2.37 8.47 -40.82 -0.35 2.02 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.70 7.49 -51.93 -0.39 0.31 16 37 H 0.08 0.49 8.03 -51.93 -0.42 0.07 16 38 H 0.04 0.24 7.85 -51.92 -0.41 -0.17 16 39 H 0.05 0.33 7.62 -51.93 -0.40 -0.07 16 40 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.38 0.74 9.12 45.56 0.42 1.15 16 44 H 0.09 0.73 8.06 -51.93 -0.42 0.31 16 45 H 0.06 0.35 7.55 -51.93 -0.39 -0.04 16 46 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 47 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -36.62 390.97 -9.21 -45.82 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.28 Total: 4.98 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.65 Total: -15.98 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.77 Total: -37.63 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.38 Total: -19.09 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.62 -9.21 -45.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863322712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.004 kcal (2) G-P(sol) polarization free energy of solvation -36.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.54 seconds