Wall clock time and date at job start Tue Mar 31 2020 23:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00010 * 2 1 4 4 H 1.48496 * 109.47459 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47152 * 300.00383 * 3 2 1 6 6 H 1.48498 * 109.47121 * 60.00231 * 3 2 1 7 7 C 1.38653 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99986 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99918 * 185.05638 * 9 7 2 11 11 C 1.38884 * 120.07070 * 354.47066 * 10 9 7 12 12 C 1.38096 * 119.93484 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06567 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.93088 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47167 * 89.99794 * 14 13 12 16 16 O 1.21279 * 119.99540 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99940 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99721 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47115 * 179.97438 * 18 17 15 20 20 N 1.46901 * 109.47237 * 179.97438 * 19 18 17 21 21 C 1.47840 * 111.00354 * 290.84533 * 20 19 18 22 22 C 1.54900 * 104.80125 * 213.63417 * 21 20 19 23 23 C 1.55139 * 101.64977 * 37.06943 * 22 21 20 24 24 H 1.08997 * 110.70823 * 82.73347 * 23 22 21 25 25 O 1.42907 * 110.70885 * 205.96777 * 23 22 21 26 26 C 1.47447 * 111.00173 * 170.00072 * 20 19 18 27 27 C 1.38303 * 120.13822 * 0.27669 * 13 12 11 28 28 C 1.38092 * 120.07112 * 359.49035 * 27 13 12 29 29 H 0.96996 * 119.99926 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03192 * 359.95417 * 11 10 9 31 31 H 1.07999 * 119.96749 * 179.97438 * 12 11 10 32 32 H 1.09008 * 109.47144 * 330.00507 * 14 13 12 33 33 H 1.08995 * 109.47351 * 210.00195 * 14 13 12 34 34 H 0.96995 * 120.00299 * 0.02562 * 17 15 14 35 35 H 1.08998 * 109.47309 * 60.00495 * 18 17 15 36 36 H 1.08995 * 109.47196 * 300.00195 * 18 17 15 37 37 H 1.08995 * 109.47268 * 300.00176 * 19 18 17 38 38 H 1.09008 * 109.47060 * 60.00385 * 19 18 17 39 39 H 1.09002 * 110.37132 * 332.46872 * 21 20 19 40 40 H 1.09007 * 110.37524 * 94.80539 * 21 20 19 41 41 H 1.08998 * 110.99171 * 278.97885 * 22 21 20 42 42 H 1.08998 * 111.02764 * 155.17560 * 22 21 20 43 43 H 0.96706 * 113.99293 * 293.60016 * 25 23 22 44 44 H 1.08995 * 109.88792 * 242.66803 * 26 20 19 45 45 H 1.08997 * 109.88693 * 3.85382 * 26 20 19 46 46 H 1.08005 * 119.96300 * 179.71934 * 27 13 12 47 47 H 1.08000 * 120.03968 * 180.25701 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4572 -3.4395 0.0922 12 6 4.2025 -4.5970 0.2008 13 6 3.5687 -5.8202 0.3233 14 6 4.3849 -7.0815 0.4411 15 6 4.6654 -7.3646 1.8945 16 8 4.2435 -6.6160 2.7504 17 7 5.3840 -8.4500 2.2431 18 6 5.6561 -8.7255 3.6561 19 6 6.4839 -10.0067 3.7757 20 7 6.7572 -10.2825 5.1925 21 6 7.6911 -9.2846 5.7560 22 6 8.5293 -10.0697 6.7955 23 6 8.6922 -11.4434 6.0933 24 1 9.5147 -11.4159 5.3787 25 8 8.8910 -12.4819 7.0547 26 6 7.3432 -11.6244 5.3660 27 6 2.1874 -5.8888 0.3317 28 6 1.4366 -4.7345 0.2283 29 1 -0.4850 0.8400 0.0004 30 1 3.9527 -2.4846 -0.0034 31 1 5.2812 -4.5471 0.1900 32 1 5.3270 -6.9559 -0.0929 33 1 3.8307 -7.9146 0.0090 34 1 5.7211 -9.0489 1.5586 35 1 4.7141 -8.8509 4.1898 36 1 6.2106 -7.8926 4.0884 37 1 5.9291 -10.8394 3.3435 38 1 7.4261 -9.8817 3.2419 39 1 8.3355 -8.8836 4.9736 40 1 7.1390 -8.4807 6.2430 41 1 7.9877 -10.1735 7.7357 42 1 9.4977 -9.5957 6.9555 43 1 9.7249 -12.4144 7.5398 44 1 6.6782 -12.2445 5.9670 45 1 7.5059 -12.0867 4.3925 46 1 1.6954 -6.8460 0.4230 47 1 0.3580 -4.7883 0.2391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863322712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:05 Heat of formation + Delta-G solvation = -111.331352 kcal Electronic energy + Delta-G solvation = -27122.259988 eV Core-core repulsion = 23076.404476 eV Total energy + Delta-G solvation = -4045.855513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.10213 -40.53605 -40.12968 -38.24186 -37.28862 -35.73781 -34.39588 -33.08124 -32.21274 -31.76548 -29.99750 -28.78783 -27.71060 -26.74717 -23.96775 -23.62781 -22.56837 -22.07906 -21.81602 -21.14257 -19.84058 -18.86397 -18.65293 -17.98730 -17.28081 -16.88917 -16.70148 -16.35012 -16.27192 -15.83610 -15.67123 -15.49901 -15.41112 -15.01249 -14.94288 -14.75723 -14.44247 -14.33797 -14.06999 -13.95693 -13.67070 -13.54074 -12.97968 -12.79303 -12.73019 -12.62625 -12.49378 -12.39750 -12.26199 -12.21849 -12.09746 -12.08750 -11.73001 -11.17168 -10.94124 -10.92790 -10.74764 -10.06355 -9.75488 -9.39716 -8.89250 -8.47421 -6.15598 0.62367 0.67968 1.33614 1.42464 1.52575 1.75826 2.12990 2.17659 2.81996 2.99488 3.19623 3.23566 3.53299 3.63538 3.70952 3.87430 3.91458 4.02104 4.06866 4.11394 4.19234 4.27112 4.28924 4.46345 4.51179 4.51891 4.56088 4.60985 4.73928 4.80626 4.82958 4.86134 4.93030 4.96068 5.04386 5.10533 5.14017 5.15342 5.31672 5.46865 5.57563 5.72344 5.79010 5.86573 5.97853 6.03186 6.24385 6.65794 6.83676 6.97182 7.39512 7.78847 8.76355 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.001665 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.144979 B =16809.948227 C =17543.812898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.111 3.889 11 C -0.245 4.245 12 C -0.060 4.060 13 C -0.146 4.146 14 C -0.076 4.076 15 C 0.510 3.490 16 O -0.583 6.583 17 N -0.717 5.717 18 C 0.127 3.873 19 C 0.050 3.950 20 N -0.541 5.541 21 C 0.037 3.963 22 C -0.158 4.158 23 C 0.085 3.915 24 H 0.082 0.918 25 O -0.578 6.578 26 C 0.048 3.952 27 C -0.058 4.058 28 C -0.207 4.207 29 H 0.272 0.728 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.419 0.581 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.398 0.602 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.147 0.853 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.309 -26.387 6.733 35.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.061 3.939 11 C -0.264 4.264 12 C -0.078 4.078 13 C -0.147 4.147 14 C -0.115 4.115 15 C 0.297 3.703 16 O -0.462 6.462 17 N -0.372 5.372 18 C 0.003 3.997 19 C -0.078 4.078 20 N -0.267 5.267 21 C -0.090 4.090 22 C -0.196 4.196 23 C 0.025 3.975 24 H 0.100 0.900 25 O -0.386 6.386 26 C -0.079 4.079 27 C -0.076 4.076 28 C -0.227 4.227 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.257 0.743 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.248 0.752 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.165 0.835 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 21.564 -25.875 7.366 34.479 hybrid contribution 1.033 1.173 -0.220 1.579 sum 22.597 -24.702 7.146 34.233 Atomic orbital electron populations 1.70197 1.08031 1.28702 1.49066 1.26621 0.96904 1.02766 0.95886 0.84508 0.78170 0.74725 0.78631 1.17538 1.18995 1.19429 1.21868 0.92498 0.81520 1.53137 0.88248 1.83936 1.35985 1.12607 1.81633 1.19947 0.91689 0.87968 0.94313 1.21235 0.93119 1.00044 1.12003 1.20944 0.99724 0.91124 0.96040 1.19298 0.93366 0.94709 1.07370 1.20535 1.02714 0.96359 0.91901 1.21228 0.76899 0.80039 0.92106 1.90766 1.52450 1.49170 1.53776 1.45730 1.55514 1.27213 1.08716 1.21075 0.99473 0.97069 0.82118 1.22413 0.99566 0.97094 0.88731 1.63392 1.44393 1.02437 1.16456 1.23067 0.93491 0.95145 0.97330 1.23399 1.01201 0.96025 0.99010 1.23048 0.97534 0.86341 0.90579 0.90035 1.86469 1.46081 1.50475 1.55604 1.22713 0.94171 0.90444 1.00617 1.20896 0.93601 0.96933 0.96210 1.20450 0.99900 0.90754 1.11549 0.91851 0.86526 0.84298 0.85093 0.84925 0.74310 0.93097 0.93183 0.88553 0.91944 0.92048 0.90881 0.90863 0.88673 0.75198 0.90774 0.90313 0.83522 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.44 13.67 21.61 0.30 -58.15 16 2 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 3 Si 1.02 44.47 29.55 68.60 2.03 46.50 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.41 -25.27 9.49 67.92 0.64 -24.62 16 8 H 0.10 5.61 5.20 -2.91 -0.02 5.59 16 9 O -0.23 -14.90 9.76 -22.73 -0.22 -15.12 16 10 C 0.11 5.91 6.65 22.58 0.15 6.06 16 11 C -0.24 -11.42 9.17 22.39 0.21 -11.22 16 12 C -0.06 -2.21 9.69 22.25 0.22 -1.99 16 13 C -0.15 -4.70 4.38 -19.83 -0.09 -4.79 16 14 C -0.08 -1.46 5.83 29.10 0.17 -1.29 16 15 C 0.51 12.21 7.82 87.66 0.69 12.89 16 16 O -0.58 -21.58 16.03 -3.02 -0.05 -21.62 16 17 N -0.72 -10.72 5.56 -463.07 -2.57 -13.29 16 18 C 0.13 2.17 5.72 86.38 0.49 2.66 16 19 C 0.05 0.52 4.68 86.30 0.40 0.92 16 20 N -0.54 -7.23 5.16 -885.56 -4.57 -11.80 16 21 C 0.04 0.45 5.78 86.77 0.50 0.95 16 22 C -0.16 -1.48 6.80 31.98 0.22 -1.26 16 23 C 0.08 0.76 4.32 31.77 0.14 0.90 16 24 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 25 O -0.58 -6.07 13.39 -148.98 -1.99 -8.07 16 26 C 0.05 0.55 6.64 86.64 0.58 1.12 16 27 C -0.06 -2.09 9.69 22.25 0.22 -1.88 16 28 C -0.21 -9.51 9.99 22.39 0.22 -9.29 16 29 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 31 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 32 H 0.13 1.63 8.08 -2.38 -0.02 1.61 16 33 H 0.13 1.63 8.08 -2.39 -0.02 1.62 16 34 H 0.42 2.64 8.47 -92.71 -0.79 1.85 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 1.03 7.49 -2.39 -0.02 1.01 16 37 H 0.10 0.76 8.03 -2.39 -0.02 0.74 16 38 H 0.06 0.43 7.85 -2.38 -0.02 0.41 16 39 H 0.06 0.62 7.62 -2.39 -0.02 0.60 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.40 0.76 9.12 -74.05 -0.68 0.09 16 44 H 0.07 1.11 8.06 -2.39 -0.02 1.09 16 45 H 0.08 0.63 7.55 -2.39 -0.02 0.61 16 46 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 47 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -88.48 390.97 -2.33 -90.81 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.46 Total: 22.56 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 5.22 Total: -31.81 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -6.85 Total: -83.24 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -2.26 Total: -44.82 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -88.48 -2.33 -90.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863322712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.524 kcal (2) G-P(sol) polarization free energy of solvation -88.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds