Wall clock time and date at job start Tue Mar 31 2020 23:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47297 * 269.99783 * 3 2 1 5 5 H 1.48504 * 109.47120 * 30.00015 * 3 2 1 6 6 H 1.48506 * 109.47126 * 149.99975 * 3 2 1 7 7 C 1.38653 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99986 * 0.02562 * 7 2 1 9 9 O 1.34825 * 119.99884 * 179.97438 * 7 2 1 10 10 C 1.35754 * 116.99918 * 185.05638 * 9 7 2 11 11 C 1.38884 * 120.07070 * 354.47066 * 10 9 7 12 12 C 1.38096 * 119.93484 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06567 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.93088 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47167 * 89.99794 * 14 13 12 16 16 O 1.21279 * 119.99540 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99940 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99721 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47115 * 179.97438 * 18 17 15 20 20 N 1.46901 * 109.47237 * 179.97438 * 19 18 17 21 21 C 1.48530 * 110.99713 * 52.60792 * 20 19 18 22 22 C 1.54935 * 103.22984 * 159.72115 * 21 20 19 23 23 C 1.54600 * 102.92060 * 322.58540 * 22 21 20 24 24 H 1.09004 * 110.30691 * 263.04215 * 23 22 21 25 25 O 1.42903 * 110.39464 * 140.91449 * 23 22 21 26 26 C 1.47900 * 111.00092 * 170.00003 * 20 19 18 27 27 C 1.38303 * 120.13822 * 0.27669 * 13 12 11 28 28 C 1.38092 * 120.07112 * 359.49035 * 27 13 12 29 29 H 0.97004 * 120.00057 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03192 * 359.95417 * 11 10 9 31 31 H 1.07999 * 119.96749 * 179.97438 * 12 11 10 32 32 H 1.09008 * 109.47144 * 330.00507 * 14 13 12 33 33 H 1.08995 * 109.47351 * 210.00195 * 14 13 12 34 34 H 0.96995 * 120.00299 * 0.02562 * 17 15 14 35 35 H 1.08998 * 109.47309 * 60.00495 * 18 17 15 36 36 H 1.08995 * 109.47196 * 300.00195 * 18 17 15 37 37 H 1.08995 * 109.47268 * 300.00176 * 19 18 17 38 38 H 1.08998 * 109.47061 * 60.00372 * 19 18 17 39 39 H 1.09003 * 110.66804 * 278.15290 * 21 20 19 40 40 H 1.08996 * 110.67078 * 41.28363 * 21 20 19 41 41 H 1.09004 * 110.72740 * 204.22853 * 22 21 20 42 42 H 1.09006 * 110.88050 * 81.01033 * 22 21 20 43 43 H 0.96699 * 113.99435 * 64.23485 * 25 23 22 44 44 H 1.09000 * 109.91977 * 333.51195 * 26 20 19 45 45 H 1.08998 * 109.91696 * 94.80630 * 26 20 19 46 46 H 1.08005 * 119.96300 * 179.71934 * 27 13 12 47 47 H 1.08000 * 120.03968 * 180.25701 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4056 -0.1060 11 6 3.2234 -3.5745 -0.0921 12 6 3.8532 -4.7987 -0.2007 13 6 5.2293 -4.8614 -0.3237 14 6 5.9135 -6.1990 -0.4415 15 6 6.0178 -6.5837 -1.8948 16 8 5.5802 -5.8442 -2.7507 17 7 6.5984 -7.7489 -2.2434 18 6 6.7003 -8.1226 -3.6563 19 6 7.3960 -9.4800 -3.7760 20 7 7.4976 -9.8550 -5.1927 21 6 8.1255 -8.7684 -5.9871 22 6 8.6222 -9.5006 -7.2590 23 6 9.1061 -10.8615 -6.7076 24 1 10.1842 -10.8430 -6.5473 25 8 8.7572 -11.9157 -7.6071 26 6 8.3693 -11.0371 -5.3668 27 6 5.9794 -3.6995 -0.3327 28 6 5.3551 -2.4721 -0.2293 29 1 -0.4850 0.8401 0.0004 30 1 2.1487 -3.5261 0.0039 31 1 3.2705 -5.7080 -0.1895 32 1 5.3339 -6.9519 0.0929 33 1 6.9123 -6.1355 -0.0098 34 1 6.9488 -8.3401 -1.5590 35 1 7.2798 -7.3696 -4.1905 36 1 5.7016 -8.1864 -4.0883 37 1 8.3947 -9.4158 -3.3442 38 1 6.8169 -10.2333 -3.2418 39 1 7.3903 -8.0060 -6.2446 40 1 8.9626 -8.3293 -5.4443 41 1 9.4463 -8.9564 -7.7204 42 1 7.8079 -9.6401 -7.9700 43 1 9.1917 -11.8571 -8.4690 44 1 9.0904 -11.0902 -4.5511 45 1 7.7649 -11.9438 -5.3913 46 1 7.0542 -3.7520 -0.4244 47 1 5.9410 -1.5649 -0.2406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863831702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:35 Heat of formation + Delta-G solvation = -78.404657 kcal Electronic energy + Delta-G solvation = -27199.531595 eV Core-core repulsion = 23155.103890 eV Total energy + Delta-G solvation = -4044.427704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.68 seconds Orbital eigenvalues (eV) -40.10679 -39.61583 -38.87712 -36.92253 -36.53804 -34.84976 -32.50866 -32.07518 -31.34234 -30.19469 -29.46117 -27.87991 -26.45604 -24.86076 -23.49290 -22.05921 -21.49762 -21.24174 -20.96395 -20.00861 -18.19933 -17.84736 -17.28004 -17.07582 -16.57113 -16.00807 -15.93733 -15.24162 -14.95715 -14.69920 -14.57506 -14.46913 -13.96036 -13.93669 -13.72674 -13.53260 -13.45596 -13.26362 -13.08994 -12.63961 -12.47801 -12.16865 -12.14639 -12.00374 -11.84841 -11.66702 -11.49686 -11.29273 -11.25906 -10.89845 -10.72439 -10.63693 -10.52097 -10.12013 -9.76202 -9.34018 -9.18553 -8.96418 -8.81953 -8.19051 -7.26279 -6.37473 -4.03749 2.18862 2.20455 2.75696 2.94154 3.24954 3.29149 3.43342 3.59873 3.64402 4.07499 4.12621 4.27454 4.44916 4.51636 4.52485 4.64490 4.72948 4.89415 4.96258 5.00449 5.01474 5.06814 5.15101 5.24221 5.25565 5.28360 5.39857 5.43216 5.51850 5.61053 5.62697 5.68045 5.70467 5.79595 6.17759 6.23595 6.29525 6.37596 6.47539 6.61111 6.84114 7.06546 7.10704 7.26559 7.35350 7.41596 7.66468 7.85087 8.08410 8.29952 8.97949 9.60793 10.70258 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024936 B = 0.001673 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.599717 B =16730.608523 C =17100.147048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.162 4.162 14 C -0.081 4.081 15 C 0.509 3.491 16 O -0.518 6.518 17 N -0.741 5.741 18 C 0.119 3.881 19 C 0.036 3.964 20 N -0.509 5.509 21 C 0.030 3.970 22 C -0.158 4.158 23 C 0.094 3.906 24 H 0.063 0.937 25 O -0.561 6.561 26 C 0.041 3.959 27 C -0.062 4.062 28 C -0.191 4.191 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.397 0.603 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.380 0.620 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.110 0.890 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.138 -22.875 -8.682 32.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.076 4.076 13 C -0.163 4.163 14 C -0.121 4.121 15 C 0.296 3.704 16 O -0.392 6.392 17 N -0.396 5.396 18 C -0.005 4.005 19 C -0.092 4.092 20 N -0.234 5.234 21 C -0.097 4.097 22 C -0.197 4.197 23 C 0.034 3.966 24 H 0.081 0.919 25 O -0.366 6.366 26 C -0.086 4.086 27 C -0.081 4.081 28 C -0.211 4.211 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.227 0.773 44 H 0.074 0.926 45 H 0.113 0.887 46 H 0.128 0.872 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 19.778 -22.235 -8.956 31.077 hybrid contribution 1.455 0.686 0.105 1.612 sum 21.233 -21.549 -8.851 31.521 Atomic orbital electron populations 1.69648 1.05550 1.28419 1.48210 1.24463 0.95029 0.98800 0.95736 0.86179 0.80298 0.81447 0.78953 1.19903 1.20818 1.18388 1.20776 0.76921 0.96641 1.52078 0.87625 1.83567 1.22605 1.25779 1.80371 1.19124 0.91710 0.85478 0.92711 1.21229 1.01060 0.91804 1.09738 1.20571 0.93255 0.96750 0.97032 1.18703 0.93595 0.92560 1.11467 1.20424 1.02261 0.97058 0.92316 1.21022 0.76989 0.80250 0.92146 1.90759 1.45751 1.50569 1.52089 1.45991 1.63044 1.22553 1.07998 1.21267 1.01810 0.94626 0.82786 1.22480 0.99796 0.97295 0.89649 1.64787 1.46337 1.04103 1.08219 1.23273 0.98207 0.94692 0.93551 1.23268 1.01903 0.96057 0.98437 1.22638 0.97263 0.86553 0.90127 0.91883 1.86553 1.72571 1.49318 1.28169 1.22842 0.95354 0.95616 0.94822 1.20394 0.98109 0.91387 0.98161 1.20145 0.91970 0.97724 1.11215 0.91102 0.84946 0.87499 0.88811 0.88915 0.76896 0.91561 0.90582 0.93885 0.89643 0.89009 0.93182 0.90566 0.89398 0.77288 0.92594 0.88746 0.87244 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.90 13.96 55.48 0.77 -25.12 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 22.15 28.62 -169.99 -4.86 17.29 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.39 -11.25 9.95 30.89 0.31 -10.94 16 8 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 9 O -0.22 -5.94 8.59 0.05 0.00 -5.94 16 10 C 0.16 3.89 6.65 -39.10 -0.26 3.63 16 11 C -0.22 -4.94 9.17 -39.39 -0.36 -5.30 16 12 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 13 C -0.16 -2.75 4.38 -104.58 -0.46 -3.21 16 14 C -0.08 -0.96 5.83 -29.03 -0.17 -1.13 16 15 C 0.51 6.81 7.82 -10.98 -0.09 6.73 16 16 O -0.52 -9.70 16.03 5.56 0.09 -9.61 16 17 N -0.74 -6.80 5.56 -60.29 -0.33 -7.14 16 18 C 0.12 1.10 5.33 -4.04 -0.02 1.08 16 19 C 0.04 0.24 5.14 -3.82 -0.02 0.23 16 20 N -0.51 -3.93 5.40 -230.46 -1.24 -5.17 16 21 C 0.03 0.21 5.10 -1.90 -0.01 0.20 16 22 C -0.16 -0.90 6.81 -24.87 -0.17 -1.07 16 23 C 0.09 0.54 4.35 -25.37 -0.11 0.43 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 25 O -0.56 -3.64 13.26 -35.23 -0.47 -4.11 16 26 C 0.04 0.28 6.51 -2.75 -0.02 0.26 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 28 C -0.19 -3.96 9.99 -39.40 -0.39 -4.36 16 29 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.13 3.12 5.64 -52.48 -0.30 2.82 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.09 0.90 8.08 -51.92 -0.42 0.48 16 33 H 0.09 0.84 8.08 -51.93 -0.42 0.43 16 34 H 0.40 2.27 8.47 -40.82 -0.35 1.92 16 35 H 0.07 0.68 6.79 -51.93 -0.35 0.32 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.24 7.81 -51.93 -0.41 -0.16 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.71 7.67 -51.93 -0.40 0.32 16 40 H 0.05 0.32 8.00 -51.93 -0.42 -0.10 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 43 H 0.38 0.86 9.12 45.56 0.42 1.27 16 44 H 0.06 0.30 7.57 -51.93 -0.39 -0.09 16 45 H 0.09 0.73 7.96 -51.93 -0.41 0.32 16 46 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 47 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -35.62 388.40 -9.07 -44.68 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.24 Total: 3.98 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.63 Total: -14.71 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.80 Total: -37.44 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.38 Total: -19.66 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.62 -9.07 -44.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863831702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.720 kcal (2) G-P(sol) polarization free energy of solvation -35.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.68 seconds