Wall clock time and date at job start Tue Mar 31 2020 23:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47297 * 269.99783 * 3 2 1 5 5 H 1.48504 * 109.47120 * 30.00015 * 3 2 1 6 6 H 1.48506 * 109.47126 * 149.99975 * 3 2 1 7 7 C 1.38653 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99986 * 0.02562 * 7 2 1 9 9 O 1.34825 * 119.99884 * 179.97438 * 7 2 1 10 10 C 1.35754 * 116.99918 * 185.05638 * 9 7 2 11 11 C 1.38884 * 120.07070 * 354.47066 * 10 9 7 12 12 C 1.38096 * 119.93484 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06567 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.93088 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47167 * 89.99794 * 14 13 12 16 16 O 1.21279 * 119.99540 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99940 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99721 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47115 * 179.97438 * 18 17 15 20 20 N 1.46901 * 109.47237 * 179.97438 * 19 18 17 21 21 C 1.48530 * 110.99713 * 52.60792 * 20 19 18 22 22 C 1.54935 * 103.22984 * 159.72115 * 21 20 19 23 23 C 1.54600 * 102.92060 * 322.58540 * 22 21 20 24 24 H 1.09004 * 110.30691 * 263.04215 * 23 22 21 25 25 O 1.42903 * 110.39464 * 140.91449 * 23 22 21 26 26 C 1.47900 * 111.00092 * 170.00003 * 20 19 18 27 27 C 1.38303 * 120.13822 * 0.27669 * 13 12 11 28 28 C 1.38092 * 120.07112 * 359.49035 * 27 13 12 29 29 H 0.97004 * 120.00057 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03192 * 359.95417 * 11 10 9 31 31 H 1.07999 * 119.96749 * 179.97438 * 12 11 10 32 32 H 1.09008 * 109.47144 * 330.00507 * 14 13 12 33 33 H 1.08995 * 109.47351 * 210.00195 * 14 13 12 34 34 H 0.96995 * 120.00299 * 0.02562 * 17 15 14 35 35 H 1.08998 * 109.47309 * 60.00495 * 18 17 15 36 36 H 1.08995 * 109.47196 * 300.00195 * 18 17 15 37 37 H 1.08995 * 109.47268 * 300.00176 * 19 18 17 38 38 H 1.08998 * 109.47061 * 60.00372 * 19 18 17 39 39 H 1.09003 * 110.66804 * 278.15290 * 21 20 19 40 40 H 1.08996 * 110.67078 * 41.28363 * 21 20 19 41 41 H 1.09004 * 110.72740 * 204.22853 * 22 21 20 42 42 H 1.09006 * 110.88050 * 81.01033 * 22 21 20 43 43 H 0.96699 * 113.99435 * 64.23485 * 25 23 22 44 44 H 1.09000 * 109.91977 * 333.51195 * 26 20 19 45 45 H 1.08998 * 109.91696 * 94.80630 * 26 20 19 46 46 H 1.08005 * 119.96300 * 179.71934 * 27 13 12 47 47 H 1.08000 * 120.03968 * 180.25701 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4056 -0.1060 11 6 3.2234 -3.5745 -0.0921 12 6 3.8532 -4.7987 -0.2007 13 6 5.2293 -4.8614 -0.3237 14 6 5.9135 -6.1990 -0.4415 15 6 6.0178 -6.5837 -1.8948 16 8 5.5802 -5.8442 -2.7507 17 7 6.5984 -7.7489 -2.2434 18 6 6.7003 -8.1226 -3.6563 19 6 7.3960 -9.4800 -3.7760 20 7 7.4976 -9.8550 -5.1927 21 6 8.1255 -8.7684 -5.9871 22 6 8.6222 -9.5006 -7.2590 23 6 9.1061 -10.8615 -6.7076 24 1 10.1842 -10.8430 -6.5473 25 8 8.7572 -11.9157 -7.6071 26 6 8.3693 -11.0371 -5.3668 27 6 5.9794 -3.6995 -0.3327 28 6 5.3551 -2.4721 -0.2293 29 1 -0.4850 0.8401 0.0004 30 1 2.1487 -3.5261 0.0039 31 1 3.2705 -5.7080 -0.1895 32 1 5.3339 -6.9519 0.0929 33 1 6.9123 -6.1355 -0.0098 34 1 6.9488 -8.3401 -1.5590 35 1 7.2798 -7.3696 -4.1905 36 1 5.7016 -8.1864 -4.0883 37 1 8.3947 -9.4158 -3.3442 38 1 6.8169 -10.2333 -3.2418 39 1 7.3903 -8.0060 -6.2446 40 1 8.9626 -8.3293 -5.4443 41 1 9.4463 -8.9564 -7.7204 42 1 7.8079 -9.6401 -7.9700 43 1 9.1917 -11.8571 -8.4690 44 1 9.0904 -11.0902 -4.5511 45 1 7.7649 -11.9438 -5.3913 46 1 7.0542 -3.7520 -0.4244 47 1 5.9410 -1.5649 -0.2406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863831702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:34 Heat of formation + Delta-G solvation = -107.948738 kcal Electronic energy + Delta-G solvation = -27200.812722 eV Core-core repulsion = 23155.103890 eV Total energy + Delta-G solvation = -4045.708832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.62 seconds Orbital eigenvalues (eV) -41.16757 -40.61164 -40.14432 -38.35190 -37.31155 -35.70519 -34.52352 -33.18918 -32.28560 -31.80199 -30.06910 -28.84473 -27.74632 -26.56742 -24.17043 -23.70471 -22.53896 -21.85123 -21.76428 -21.16769 -19.81863 -19.11505 -18.63604 -18.01320 -17.35081 -16.90120 -16.75747 -16.55344 -16.16429 -15.76808 -15.71694 -15.60111 -15.34722 -15.16774 -15.05140 -14.66254 -14.40853 -14.28569 -14.16910 -14.07688 -13.90704 -13.64813 -13.04578 -12.83031 -12.61215 -12.54975 -12.49541 -12.41604 -12.36995 -12.30836 -12.17021 -11.92861 -11.71062 -11.28206 -10.99711 -10.93585 -10.82908 -10.08803 -9.78633 -9.47023 -8.98036 -8.50726 -6.23358 0.58817 0.61864 1.29622 1.34624 1.50905 1.73611 2.12945 2.27537 2.76884 2.99372 3.09974 3.20055 3.25055 3.61959 3.66651 3.84769 3.89189 4.01986 4.04951 4.15665 4.17078 4.24247 4.25932 4.43985 4.48667 4.57165 4.58414 4.59135 4.71065 4.80890 4.83045 4.86920 4.89368 4.93826 4.95739 4.99589 5.13317 5.25843 5.37635 5.44207 5.56778 5.74207 5.79220 5.79796 5.91297 5.94704 6.25229 6.63222 6.83405 6.87482 7.36867 7.58111 8.61098 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024936 B = 0.001673 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.599717 B =16730.608523 C =17100.147048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.401 4.401 8 H 0.078 0.922 9 O -0.246 6.246 10 C 0.117 3.883 11 C -0.240 4.240 12 C -0.066 4.066 13 C -0.138 4.138 14 C -0.078 4.078 15 C 0.510 3.490 16 O -0.582 6.582 17 N -0.717 5.717 18 C 0.123 3.877 19 C 0.046 3.954 20 N -0.531 5.531 21 C 0.029 3.971 22 C -0.154 4.154 23 C 0.094 3.906 24 H 0.084 0.916 25 O -0.581 6.581 26 C 0.039 3.961 27 C -0.059 4.059 28 C -0.194 4.194 29 H 0.285 0.715 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.420 0.580 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.396 0.604 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.155 0.845 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.370 -25.029 -8.283 36.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.096 0.904 9 O -0.154 6.154 10 C 0.068 3.932 11 C -0.259 4.259 12 C -0.084 4.084 13 C -0.139 4.139 14 C -0.117 4.117 15 C 0.298 3.702 16 O -0.461 6.461 17 N -0.372 5.372 18 C -0.001 4.001 19 C -0.082 4.082 20 N -0.257 5.257 21 C -0.099 4.099 22 C -0.192 4.192 23 C 0.035 3.965 24 H 0.102 0.898 25 O -0.390 6.390 26 C -0.088 4.088 27 C -0.077 4.077 28 C -0.213 4.213 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.156 0.844 34 H 0.257 0.743 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.246 0.754 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.173 0.827 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 24.068 -24.484 -8.543 35.380 hybrid contribution 0.329 0.971 -0.085 1.029 sum 24.397 -23.513 -8.627 34.965 Atomic orbital electron populations 1.69733 1.06898 1.29595 1.50224 1.25308 0.95935 1.02214 0.95505 0.85191 0.78830 0.77285 0.79207 1.19300 1.18869 1.18619 1.20710 0.78189 0.96104 1.52713 0.90421 1.83505 1.21177 1.27444 1.83258 1.19695 0.93319 0.85059 0.95124 1.21258 1.00059 0.93413 1.11175 1.20923 0.94857 0.96099 0.96500 1.19336 0.92803 0.95311 1.06486 1.20559 1.04715 0.94524 0.91908 1.21215 0.76338 0.80580 0.92106 1.90766 1.48789 1.52782 1.53755 1.45737 1.61265 1.21494 1.08678 1.21188 1.00514 0.96002 0.82422 1.22398 1.00627 0.95634 0.89556 1.64730 1.47373 1.04729 1.08824 1.23257 0.97990 0.94368 0.94264 1.23241 1.02004 0.96338 0.97647 1.22701 0.98185 0.86073 0.89550 0.89840 1.86510 1.73330 1.49698 1.29445 1.22872 0.95389 0.94418 0.96143 1.20961 1.00432 0.90194 0.96109 1.20518 0.90539 0.99894 1.10345 0.90559 0.87680 0.84990 0.85434 0.84440 0.74286 0.92534 0.93255 0.91768 0.88820 0.90723 0.92224 0.88766 0.90837 0.75384 0.90820 0.90256 0.82749 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.95 13.96 21.61 0.30 -56.64 16 2 C 0.01 0.51 5.49 84.83 0.47 0.98 16 3 Si 0.97 47.09 28.62 68.60 1.96 49.05 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.40 -24.77 9.95 67.92 0.68 -24.09 16 8 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 9 O -0.25 -14.09 8.59 -22.73 -0.20 -14.29 16 10 C 0.12 5.83 6.65 22.58 0.15 5.98 16 11 C -0.24 -11.33 9.17 22.39 0.21 -11.13 16 12 C -0.07 -2.43 9.69 22.25 0.22 -2.22 16 13 C -0.14 -4.24 4.38 -19.83 -0.09 -4.32 16 14 C -0.08 -1.42 5.83 29.10 0.17 -1.25 16 15 C 0.51 11.81 7.82 87.66 0.69 12.50 16 16 O -0.58 -20.92 16.03 -3.02 -0.05 -20.97 16 17 N -0.72 -10.43 5.56 -463.07 -2.57 -13.01 16 18 C 0.12 2.05 5.33 86.38 0.46 2.51 16 19 C 0.05 0.49 5.14 86.30 0.44 0.93 16 20 N -0.53 -7.31 5.40 -883.04 -4.77 -12.08 16 21 C 0.03 0.36 5.10 86.65 0.44 0.80 16 22 C -0.15 -1.51 6.81 31.80 0.22 -1.30 16 23 C 0.09 0.88 4.35 31.47 0.14 1.02 16 24 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 25 O -0.58 -6.68 13.26 -148.98 -1.97 -8.66 16 26 C 0.04 0.44 6.51 86.45 0.56 1.00 16 27 C -0.06 -1.90 9.69 22.25 0.22 -1.68 16 28 C -0.19 -7.88 9.99 22.39 0.22 -7.65 16 29 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 30 H 0.11 5.45 5.64 -2.91 -0.02 5.43 16 31 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 32 H 0.13 1.61 8.08 -2.38 -0.02 1.59 16 33 H 0.14 1.44 8.08 -2.39 -0.02 1.42 16 34 H 0.42 2.56 8.47 -92.71 -0.79 1.78 16 35 H 0.06 1.08 6.79 -2.39 -0.02 1.06 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 0.44 7.81 -2.39 -0.02 0.42 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 1.17 7.67 -2.39 -0.02 1.15 16 40 H 0.06 0.62 8.00 -2.39 -0.02 0.60 16 41 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 43 H 0.40 1.18 9.12 -74.06 -0.68 0.50 16 44 H 0.07 0.54 7.57 -2.39 -0.02 0.52 16 45 H 0.08 1.13 7.96 -2.39 -0.02 1.11 16 46 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 47 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -84.64 388.40 -2.57 -87.21 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -0.46 Total: 17.31 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 5.18 Total: -27.92 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -7.04 Total: -81.73 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -2.22 Total: -43.92 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.96 Total: 49.05 kcal Total: -84.64 -2.57 -87.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863831702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.743 kcal (2) G-P(sol) polarization free energy of solvation -84.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.63 seconds