Wall clock time and date at job start Tue Mar 31 2020 22:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00136 * 2 1 4 4 H 1.48496 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47065 * 299.99388 * 3 2 1 6 6 H 1.48497 * 109.47159 * 59.99473 * 3 2 1 7 7 C 1.37886 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99803 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46899 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47088 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47088 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47152 * 304.99740 * 12 11 10 14 14 N 1.46904 * 109.47156 * 64.99662 * 12 11 10 15 15 C 1.50693 * 109.47299 * 184.99617 * 12 11 10 16 16 O 1.21298 * 120.00271 * 259.99931 * 15 12 11 17 17 N 1.34783 * 120.00170 * 79.99606 * 15 12 11 18 18 C 1.40135 * 120.00079 * 185.54325 * 17 15 12 19 19 C 1.38941 * 120.20562 * 24.76397 * 18 17 15 20 20 C 1.38165 * 120.13052 * 180.02562 * 19 18 17 21 21 C 1.38373 * 120.27889 * 359.95505 * 20 19 18 22 22 C 1.38562 * 119.84406 * 0.02562 * 21 20 19 23 23 C 1.38585 * 120.10807 * 0.03186 * 22 21 20 24 24 O 1.36533 * 119.62363 * 180.02562 * 23 22 21 25 25 C 1.42912 * 115.91476 * 291.69501 * 24 23 22 26 26 C 1.52067 * 110.76123 * 84.40797 * 25 24 23 27 27 C 1.52067 * 112.36327 * 295.20961 * 26 25 24 28 28 O 1.36473 * 120.27920 * 180.02562 * 22 21 20 29 29 H 0.96997 * 119.99676 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47561 * 59.99984 * 9 7 2 31 31 H 1.08999 * 109.47455 * 299.99799 * 9 7 2 32 32 H 1.09000 * 109.46948 * 59.99706 * 10 9 7 33 33 H 1.09007 * 109.46737 * 299.99917 * 10 9 7 34 34 H 1.09000 * 109.47725 * 59.99865 * 11 10 9 35 35 H 1.09007 * 109.47005 * 299.99436 * 11 10 9 36 36 H 1.00896 * 110.99761 * 60.00041 * 14 12 11 37 37 H 1.00901 * 110.99781 * 183.95977 * 14 12 11 38 38 H 0.97001 * 119.99120 * 5.54822 * 17 15 12 39 39 H 1.08001 * 119.93322 * 0.27859 * 19 18 17 40 40 H 1.07996 * 119.86343 * 179.97438 * 20 19 18 41 41 H 1.08000 * 120.07856 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.22130 * 324.06947 * 25 24 23 43 43 H 1.09005 * 109.18065 * 204.71453 * 25 24 23 44 44 H 1.09001 * 108.90273 * 174.46681 * 26 25 24 45 45 H 1.08997 * 108.82714 * 55.90243 * 26 25 24 46 46 H 1.09004 * 109.21685 * 304.45501 * 27 26 25 47 47 H 1.09005 * 109.17948 * 185.09844 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1501 0.0005 13 1 3.1591 -6.0432 -0.8408 14 7 3.2367 -6.1420 1.2563 15 6 1.7251 -7.4516 -0.1238 16 8 1.5121 -8.1255 0.8620 17 7 1.2916 -7.8670 -1.3305 18 6 0.4958 -9.0161 -1.4317 19 6 -0.2671 -9.4356 -0.3488 20 6 -1.0508 -10.5690 -0.4501 21 6 -1.0820 -11.2925 -1.6292 22 6 -0.3236 -10.8787 -2.7124 23 6 0.4651 -9.7433 -2.6158 24 8 1.2080 -9.3441 -3.6895 25 6 2.2971 -10.1975 -4.0473 26 6 1.8214 -11.3332 -4.9397 27 6 0.8589 -12.2675 -4.2235 28 8 -0.3481 -11.5854 -3.8797 29 1 -0.4849 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8719 -3.6044 0.8905 33 1 2.8719 -3.6044 -0.8895 34 1 0.8538 -5.0447 -0.8903 35 1 0.8533 -5.0451 0.8898 36 1 2.6239 -6.2398 2.0519 37 1 3.9444 -6.8612 1.2543 38 1 1.5305 -7.3706 -2.1289 39 1 -0.2506 -8.8723 0.5725 40 1 -1.6417 -10.8914 0.3944 41 1 -1.6960 -12.1778 -1.7049 42 1 2.7395 -10.6135 -3.1421 43 1 3.0493 -9.6144 -4.5788 44 1 2.6866 -11.9059 -5.2738 45 1 1.3208 -10.9101 -5.8105 46 1 1.3308 -12.6410 -3.3146 47 1 0.6228 -13.1078 -4.8765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868038784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:19 Heat of formation + Delta-G solvation = -95.061817 kcal Electronic energy + Delta-G solvation = -28628.947848 eV Core-core repulsion = 24583.797836 eV Total energy + Delta-G solvation = -4045.150013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46193 -40.28372 -37.90154 -37.78864 -35.83287 -34.82903 -33.39257 -33.25866 -31.38954 -29.97534 -29.38208 -27.92538 -26.90462 -25.35899 -23.41149 -22.62687 -22.41126 -21.68194 -20.22764 -20.04851 -18.86760 -18.02865 -17.76920 -16.80274 -16.38873 -16.19158 -15.84355 -15.79135 -15.61273 -15.40282 -14.78936 -14.57712 -14.44596 -14.37682 -14.16006 -14.01854 -13.55500 -13.06458 -12.85593 -12.52814 -12.45207 -12.34736 -11.79482 -11.56724 -11.55572 -11.33594 -11.17518 -10.87789 -10.77679 -10.71767 -10.63952 -10.44085 -10.42383 -10.11153 -9.62738 -9.24504 -9.04692 -8.79344 -8.67430 -8.29880 -8.28325 -5.95225 -3.96845 0.79343 0.87757 2.34430 2.73337 3.04635 3.16751 3.34207 3.41597 3.46097 3.60946 4.20416 4.28963 4.38465 4.50666 4.61532 4.67629 4.70316 4.79611 4.86529 4.92431 4.97873 5.04826 5.09991 5.16705 5.30084 5.31212 5.35543 5.40715 5.55006 5.75913 5.86595 5.89036 6.06308 6.08706 6.19518 6.39863 6.45689 6.74784 6.78720 6.95841 6.99950 7.18776 7.22617 7.23740 7.42189 7.74755 7.84873 7.89611 8.06205 8.49265 9.11027 9.66967 11.16263 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.002213 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.677469 B =12650.958630 C =13037.146089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.099 4.099 11 C -0.105 4.105 12 C 0.081 3.919 13 H 0.104 0.896 14 N -0.809 5.809 15 C 0.483 3.517 16 O -0.528 6.528 17 N -0.662 5.662 18 C 0.161 3.839 19 C -0.127 4.127 20 C -0.088 4.088 21 C -0.140 4.140 22 C 0.085 3.915 23 C 0.029 3.971 24 O -0.316 6.316 25 C 0.059 3.941 26 C -0.187 4.187 27 C 0.060 3.940 28 O -0.318 6.318 29 H 0.259 0.741 30 H 0.013 0.987 31 H 0.014 0.986 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.352 0.648 37 H 0.339 0.661 38 H 0.419 0.581 39 H 0.154 0.846 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.057 0.943 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -28.619 -7.105 29.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.137 4.137 11 C -0.143 4.143 12 C -0.035 4.035 13 H 0.122 0.878 14 N -0.337 5.337 15 C 0.270 3.730 16 O -0.404 6.404 17 N -0.306 5.306 18 C 0.065 3.935 19 C -0.147 4.147 20 C -0.107 4.107 21 C -0.159 4.159 22 C 0.041 3.959 23 C -0.018 4.018 24 O -0.232 6.232 25 C -0.016 4.016 26 C -0.224 4.224 27 C -0.014 4.014 28 O -0.234 6.234 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.032 0.968 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.166 0.834 37 H 0.151 0.849 38 H 0.256 0.744 39 H 0.172 0.828 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.074 0.926 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.889 -28.004 -6.814 28.965 hybrid contribution 0.335 -0.056 -0.359 0.494 sum 3.223 -28.060 -7.173 29.141 Atomic orbital electron populations 1.69979 1.06052 1.26375 1.51262 1.25043 0.94837 0.99257 0.95509 0.86557 0.80158 0.83912 0.77502 1.19729 1.21107 1.21082 1.21306 0.93094 0.91058 1.49950 0.92603 1.19130 0.94104 0.91623 0.96993 1.21540 0.98783 0.92140 1.01231 1.21692 0.96500 0.93888 1.02226 1.21814 0.95956 0.90088 0.95644 0.87839 1.59029 1.17271 1.54273 1.03151 1.22942 0.78926 0.88957 0.82139 1.90639 1.56394 1.56327 1.37059 1.43741 1.49938 1.25810 1.11147 1.17810 0.93649 0.89537 0.92529 1.21452 0.95506 0.98279 0.99484 1.21014 0.97966 0.94441 0.97255 1.21074 1.02014 1.01657 0.91180 1.18832 0.98499 0.91714 0.86892 1.18730 0.98859 0.96051 0.88132 1.86377 1.43068 1.48700 1.45056 1.22650 0.87903 0.92497 0.98555 1.22464 1.00689 0.98109 1.01177 1.22615 0.85046 0.94092 0.99686 1.86357 1.35395 1.64983 1.36676 0.93150 0.96906 0.96751 0.91761 0.93597 0.91698 0.91725 0.83399 0.84890 0.74354 0.82812 0.84648 0.84784 0.92634 0.87734 0.89197 0.89671 0.92498 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 10 C -0.10 -1.98 5.04 -26.73 -0.13 -2.12 16 11 C -0.10 -1.67 4.84 -26.73 -0.13 -1.80 16 12 C 0.08 1.04 3.15 -68.86 -0.22 0.82 16 13 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 14 N -0.81 -10.27 8.44 -5.65 -0.05 -10.31 16 15 C 0.48 6.23 6.88 -10.99 -0.08 6.15 16 16 O -0.53 -7.86 13.43 5.54 0.07 -7.78 16 17 N -0.66 -7.77 5.29 -9.77 -0.05 -7.82 16 18 C 0.16 2.01 6.45 -83.52 -0.54 1.47 16 19 C -0.13 -1.56 8.72 -39.35 -0.34 -1.90 16 20 C -0.09 -0.88 10.03 -39.56 -0.40 -1.28 16 21 C -0.14 -1.39 10.00 -39.41 -0.39 -1.78 16 22 C 0.09 0.97 5.73 -39.33 -0.23 0.74 16 23 C 0.03 0.35 5.74 -39.17 -0.22 0.12 16 24 O -0.32 -3.55 9.60 -36.97 -0.35 -3.90 16 25 C 0.06 0.46 6.51 36.68 0.24 0.70 16 26 C -0.19 -1.18 5.93 -27.68 -0.16 -1.34 16 27 C 0.06 0.43 6.51 36.68 0.24 0.67 16 28 O -0.32 -3.43 10.16 -36.77 -0.37 -3.81 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 1.32 7.75 -51.93 -0.40 0.92 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.35 4.60 8.58 -39.29 -0.34 4.26 16 37 H 0.34 3.67 9.06 -39.29 -0.36 3.31 16 38 H 0.42 4.30 8.36 -40.82 -0.34 3.96 16 39 H 0.15 2.07 5.81 -52.49 -0.30 1.77 16 40 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.06 0.42 7.93 -51.93 -0.41 0.01 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.37 7.93 -51.93 -0.41 -0.04 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 385.16 15.07 5.80 5.80 Total: -1.00 -33.77 385.16 -9.33 -43.10 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.18 Total: 7.18 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.92 Total: -12.76 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.64 Total: -44.69 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.65 Total: -15.49 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.77 -9.33 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868038784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.963 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds