Wall clock time and date at job start Tue Mar 31 2020 22:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00136 * 2 1 4 4 H 1.48496 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47065 * 299.99388 * 3 2 1 6 6 H 1.48497 * 109.47159 * 59.99473 * 3 2 1 7 7 C 1.37886 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99803 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46899 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47088 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47088 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47152 * 304.99740 * 12 11 10 14 14 N 1.46904 * 109.47156 * 64.99662 * 12 11 10 15 15 C 1.50693 * 109.47299 * 184.99617 * 12 11 10 16 16 O 1.21298 * 120.00271 * 259.99931 * 15 12 11 17 17 N 1.34783 * 120.00170 * 79.99606 * 15 12 11 18 18 C 1.40135 * 120.00079 * 185.54325 * 17 15 12 19 19 C 1.38941 * 120.20562 * 24.76397 * 18 17 15 20 20 C 1.38165 * 120.13052 * 180.02562 * 19 18 17 21 21 C 1.38373 * 120.27889 * 359.95505 * 20 19 18 22 22 C 1.38562 * 119.84406 * 0.02562 * 21 20 19 23 23 C 1.38585 * 120.10807 * 0.03186 * 22 21 20 24 24 O 1.36533 * 119.62363 * 180.02562 * 23 22 21 25 25 C 1.42912 * 115.91476 * 291.69501 * 24 23 22 26 26 C 1.52067 * 110.76123 * 84.40797 * 25 24 23 27 27 C 1.52067 * 112.36327 * 295.20961 * 26 25 24 28 28 O 1.36473 * 120.27920 * 180.02562 * 22 21 20 29 29 H 0.96997 * 119.99676 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47561 * 59.99984 * 9 7 2 31 31 H 1.08999 * 109.47455 * 299.99799 * 9 7 2 32 32 H 1.09000 * 109.46948 * 59.99706 * 10 9 7 33 33 H 1.09007 * 109.46737 * 299.99917 * 10 9 7 34 34 H 1.09000 * 109.47725 * 59.99865 * 11 10 9 35 35 H 1.09007 * 109.47005 * 299.99436 * 11 10 9 36 36 H 1.00896 * 110.99761 * 60.00041 * 14 12 11 37 37 H 1.00901 * 110.99781 * 183.95977 * 14 12 11 38 38 H 0.97001 * 119.99120 * 5.54822 * 17 15 12 39 39 H 1.08001 * 119.93322 * 0.27859 * 19 18 17 40 40 H 1.07996 * 119.86343 * 179.97438 * 20 19 18 41 41 H 1.08000 * 120.07856 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.22130 * 324.06947 * 25 24 23 43 43 H 1.09005 * 109.18065 * 204.71453 * 25 24 23 44 44 H 1.09001 * 108.90273 * 174.46681 * 26 25 24 45 45 H 1.08997 * 108.82714 * 55.90243 * 26 25 24 46 46 H 1.09004 * 109.21685 * 304.45501 * 27 26 25 47 47 H 1.09005 * 109.17948 * 185.09844 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1501 0.0005 13 1 3.1591 -6.0432 -0.8408 14 7 3.2367 -6.1420 1.2563 15 6 1.7251 -7.4516 -0.1238 16 8 1.5121 -8.1255 0.8620 17 7 1.2916 -7.8670 -1.3305 18 6 0.4958 -9.0161 -1.4317 19 6 -0.2671 -9.4356 -0.3488 20 6 -1.0508 -10.5690 -0.4501 21 6 -1.0820 -11.2925 -1.6292 22 6 -0.3236 -10.8787 -2.7124 23 6 0.4651 -9.7433 -2.6158 24 8 1.2080 -9.3441 -3.6895 25 6 2.2971 -10.1975 -4.0473 26 6 1.8214 -11.3332 -4.9397 27 6 0.8589 -12.2675 -4.2235 28 8 -0.3481 -11.5854 -3.8797 29 1 -0.4849 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8719 -3.6044 0.8905 33 1 2.8719 -3.6044 -0.8895 34 1 0.8538 -5.0447 -0.8903 35 1 0.8533 -5.0451 0.8898 36 1 2.6239 -6.2398 2.0519 37 1 3.9444 -6.8612 1.2543 38 1 1.5305 -7.3706 -2.1289 39 1 -0.2506 -8.8723 0.5725 40 1 -1.6417 -10.8914 0.3944 41 1 -1.6960 -12.1778 -1.7049 42 1 2.7395 -10.6135 -3.1421 43 1 3.0493 -9.6144 -4.5788 44 1 2.6866 -11.9059 -5.2738 45 1 1.3208 -10.9101 -5.8105 46 1 1.3308 -12.6410 -3.3146 47 1 0.6228 -13.1078 -4.8765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868038784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:18 Heat of formation + Delta-G solvation = -118.364735 kcal Electronic energy + Delta-G solvation = -28629.958339 eV Core-core repulsion = 24583.797836 eV Total energy + Delta-G solvation = -4046.160503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.29981 -41.20478 -38.72739 -38.54861 -37.16928 -35.76128 -35.26457 -33.87743 -33.14784 -30.85771 -30.17556 -29.49838 -27.55957 -26.84269 -24.78687 -23.48503 -23.39755 -22.50780 -21.74810 -21.20400 -19.64419 -18.90490 -18.62999 -18.44140 -17.68724 -17.17677 -16.83221 -16.62452 -16.47337 -16.37041 -16.23443 -15.79965 -15.49385 -15.37105 -15.11179 -14.81504 -14.57256 -14.30174 -14.16334 -13.72705 -13.56049 -13.29085 -13.15620 -13.10045 -12.85919 -12.51782 -12.35100 -12.26137 -12.15705 -11.92132 -11.69327 -11.50927 -11.39924 -11.38687 -11.23276 -11.05613 -10.88185 -10.52382 -9.77100 -9.59570 -9.16444 -8.16993 -6.27306 -0.03111 0.03144 1.35184 1.41491 1.41972 1.55487 1.81552 2.27878 2.43489 2.46013 2.80052 3.16243 3.37384 3.62416 3.69155 3.74842 3.93114 3.94397 4.05635 4.11497 4.17813 4.24041 4.26638 4.32612 4.39302 4.43535 4.50737 4.64399 4.73841 4.77996 4.90669 4.95703 5.05244 5.09576 5.12762 5.25665 5.27889 5.34361 5.36304 5.60170 5.61202 5.84313 5.93706 5.96684 6.05969 6.25239 6.30481 6.45190 6.47476 6.87813 6.90998 7.41795 8.95097 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.002213 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.677469 B =12650.958630 C =13037.146089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.020 3.980 10 C -0.083 4.083 11 C -0.096 4.096 12 C 0.093 3.907 13 H 0.126 0.874 14 N -0.814 5.814 15 C 0.488 3.512 16 O -0.549 6.549 17 N -0.654 5.654 18 C 0.141 3.859 19 C -0.145 4.145 20 C -0.084 4.084 21 C -0.136 4.136 22 C 0.076 3.924 23 C 0.023 3.977 24 O -0.333 6.333 25 C 0.050 3.950 26 C -0.182 4.182 27 C 0.051 3.949 28 O -0.335 6.335 29 H 0.262 0.738 30 H -0.010 1.010 31 H -0.015 1.015 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.349 0.651 37 H 0.351 0.649 38 H 0.425 0.575 39 H 0.138 0.862 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.055 0.945 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 -29.841 -8.073 31.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.079 0.921 9 C -0.017 4.017 10 C -0.120 4.120 11 C -0.134 4.134 12 C -0.023 4.023 13 H 0.144 0.856 14 N -0.343 5.343 15 C 0.275 3.725 16 O -0.427 6.427 17 N -0.299 5.299 18 C 0.044 3.956 19 C -0.165 4.165 20 C -0.102 4.102 21 C -0.155 4.155 22 C 0.031 3.969 23 C -0.024 4.024 24 O -0.250 6.250 25 C -0.025 4.025 26 C -0.220 4.220 27 C -0.023 4.023 28 O -0.252 6.252 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.003 0.997 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.264 0.736 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.175 0.825 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.335 -29.250 -7.807 30.583 hybrid contribution -0.135 0.242 -0.116 0.300 sum 4.200 -29.008 -7.923 30.363 Atomic orbital electron populations 1.70115 1.07839 1.27562 1.52178 1.26012 0.95765 1.03443 0.94976 0.85407 0.79188 0.78836 0.77672 1.18426 1.20397 1.20588 1.21760 0.93596 0.92390 1.49741 0.92084 1.19067 0.94610 0.93571 0.94439 1.21276 0.97504 0.91839 1.01427 1.21480 0.96731 0.93332 1.01876 1.21622 0.95429 0.88649 0.96614 0.85631 1.59031 1.17464 1.54940 1.02910 1.22813 0.78694 0.88810 0.82170 1.90636 1.57177 1.57035 1.37826 1.43624 1.49491 1.25759 1.10990 1.17965 0.94423 0.90044 0.93124 1.21458 0.96758 0.99317 0.98967 1.21279 0.97327 0.93424 0.98207 1.21351 1.01504 1.02122 0.90571 1.19068 0.98498 0.91789 0.87513 1.18826 0.99294 0.96169 0.88096 1.86334 1.43913 1.49975 1.44785 1.22933 0.87384 0.93084 0.99053 1.22456 1.01561 0.97756 1.00223 1.22924 0.84224 0.94628 1.00491 1.86322 1.37322 1.65124 1.36443 0.92918 0.99149 0.99661 0.92165 0.92566 0.91274 0.93064 0.83747 0.83495 0.73645 0.84412 0.82177 0.82466 0.92647 0.85938 0.86143 0.90579 0.92003 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.03 13.29 21.45 0.28 -57.75 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.07 4.97 29.85 0.15 1.22 16 10 C -0.08 -3.31 5.04 30.59 0.15 -3.15 16 11 C -0.10 -3.07 4.84 30.59 0.15 -2.92 16 12 C 0.09 2.29 3.15 44.17 0.14 2.43 16 13 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 14 N -0.81 -19.96 8.44 -171.79 -1.45 -21.41 16 15 C 0.49 12.44 6.88 87.65 0.60 13.05 16 16 O -0.55 -16.43 13.43 -3.08 -0.04 -16.47 16 17 N -0.65 -15.24 5.29 -303.19 -1.60 -16.85 16 18 C 0.14 3.52 6.45 38.16 0.25 3.76 16 19 C -0.14 -3.57 8.72 22.42 0.20 -3.38 16 20 C -0.08 -1.60 10.03 22.28 0.22 -1.38 16 21 C -0.14 -2.52 10.00 22.38 0.22 -2.30 16 22 C 0.08 1.66 5.73 22.43 0.13 1.79 16 23 C 0.02 0.54 5.74 22.53 0.13 0.67 16 24 O -0.33 -7.28 9.60 -84.89 -0.81 -8.10 16 25 C 0.05 0.70 6.51 71.67 0.47 1.17 16 26 C -0.18 -1.93 5.93 29.98 0.18 -1.76 16 27 C 0.05 0.63 6.51 71.67 0.47 1.10 16 28 O -0.34 -6.82 10.16 -84.18 -0.85 -7.67 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 30 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.06 2.45 7.75 -2.39 -0.02 2.43 16 33 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.35 9.04 8.58 -89.70 -0.77 8.27 16 37 H 0.35 7.15 9.06 -89.69 -0.81 6.34 16 38 H 0.43 8.55 8.36 -92.71 -0.78 7.77 16 39 H 0.14 3.84 5.81 -2.91 -0.02 3.82 16 40 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 41 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.06 0.77 7.93 -2.39 -0.02 0.75 16 43 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 0.70 7.93 -2.38 -0.02 0.68 16 47 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -73.95 385.16 0.35 -73.60 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -1.34 Total: 27.95 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.15 Total: -20.21 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -2.77 Total: -96.00 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.71 Total: -32.24 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.95 0.35 -73.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868038784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.760 kcal (2) G-P(sol) polarization free energy of solvation -73.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds