Wall clock time and date at job start Tue Mar 31 2020 22:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47104 * 121.35627 * 3 2 1 5 5 N 1.46496 * 109.47528 * 180.02562 * 4 3 2 6 6 C 1.46491 * 120.00453 * 89.99575 * 5 4 3 7 7 C 1.50702 * 109.46957 * 90.00133 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99985 * 180.27663 * 9 7 6 11 11 Si 1.86800 * 119.99777 * 0.28166 * 9 7 6 12 12 H 1.48498 * 109.47109 * 89.99834 * 11 9 7 13 13 H 1.48507 * 109.46754 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99405 * 11 9 7 15 15 C 1.34780 * 119.99526 * 270.00078 * 5 4 3 16 16 O 1.21285 * 119.99673 * 179.97438 * 15 5 4 17 17 C 1.50700 * 120.00400 * 359.97438 * 15 5 4 18 18 O 1.45197 * 109.47390 * 179.97438 * 17 15 5 19 19 C 1.34229 * 117.00024 * 179.97438 * 18 17 15 20 20 O 1.20829 * 119.99934 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99840 * 180.02562 * 19 18 17 22 22 C 1.52306 * 115.91449 * 248.17507 * 21 19 18 23 23 C 1.51368 * 60.10306 * 253.81584 * 22 21 19 24 24 H 1.08997 * 115.85378 * 108.01123 * 23 22 21 25 25 C 1.52543 * 117.52628 * 248.66163 * 23 22 21 26 26 C 1.52874 * 110.48456 * 89.28647 * 25 23 22 27 27 C 1.53295 * 108.58095 * 306.53497 * 26 25 23 28 28 C 1.52070 * 114.63591 * 34.42292 * 21 19 18 29 29 H 1.08997 * 109.47125 * 1.35779 * 3 2 1 30 30 H 1.08999 * 109.46828 * 241.35265 * 3 2 1 31 31 H 1.09005 * 109.47023 * 59.99431 * 4 3 2 32 32 H 1.09006 * 109.47021 * 300.00229 * 4 3 2 33 33 H 1.09004 * 109.47166 * 330.00399 * 6 5 4 34 34 H 1.08994 * 109.47507 * 210.00106 * 6 5 4 35 35 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.47359 * 300.00599 * 17 15 5 37 37 H 1.09008 * 109.46888 * 59.99948 * 17 15 5 38 38 H 1.09003 * 117.53820 * 0.84884 * 22 21 19 39 39 H 1.08992 * 117.54147 * 146.10195 * 22 21 19 40 40 H 1.09002 * 108.32748 * 329.51633 * 25 23 22 41 41 H 1.09002 * 110.03962 * 210.15083 * 25 23 22 42 42 H 1.09002 * 109.61530 * 186.81190 * 26 25 23 43 43 H 1.08998 * 109.76807 * 66.36003 * 26 25 23 44 44 H 1.08997 * 109.62435 * 314.71928 * 27 26 25 45 45 H 1.08997 * 109.76882 * 194.26186 * 27 26 25 46 46 H 1.08995 * 109.26737 * 285.88811 * 28 21 19 47 47 H 1.09000 * 109.27022 * 45.36160 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.7515 -1.2318 5 7 4.5826 0.7517 -1.2322 6 6 5.3151 -0.3315 -1.8926 7 6 5.5659 0.0366 -3.3323 8 1 5.2151 0.9829 -3.7168 9 6 6.2487 -0.8322 -4.1571 10 7 6.4723 -0.5086 -5.4121 11 14 6.8560 -2.4687 -3.4920 12 1 5.8070 -3.5018 -3.6859 13 1 8.0876 -2.8715 -4.2175 14 1 7.1563 -2.3338 -2.0440 15 6 5.2565 1.7485 -0.6248 16 8 6.4693 1.7484 -0.6248 17 6 4.5030 2.8630 0.0542 18 8 5.4465 3.8052 0.6290 19 6 4.9334 4.8647 1.2739 20 8 3.7356 5.0001 1.3558 21 6 5.8515 5.8853 1.8958 22 6 5.8526 5.9397 3.4179 23 6 5.1720 7.0343 2.6243 24 1 4.0824 7.0336 2.6511 25 6 5.8059 8.4216 2.6496 26 6 6.8304 8.5623 1.5238 27 6 7.8273 7.4020 1.6226 28 6 7.1422 6.1275 1.1291 29 1 2.9718 -1.0265 -0.0244 30 1 2.9711 0.4935 0.9019 31 1 2.7538 1.7787 -1.2075 32 1 2.7545 0.2587 -2.1337 33 1 4.7262 -1.2477 -1.8491 34 1 6.2676 -0.4875 -1.3863 35 1 6.9523 -1.1200 -5.9924 36 1 3.8764 3.3754 -0.6758 37 1 3.8762 2.4493 0.8442 38 1 5.2093 5.2371 3.9478 39 1 6.7926 6.1831 3.9128 40 1 6.3041 8.5533 3.6101 41 1 5.0369 9.1857 2.5361 42 1 7.3599 9.5095 1.6271 43 1 6.3246 8.5292 0.5588 44 1 8.1370 7.2728 2.6597 45 1 8.6996 7.6117 1.0037 46 1 7.8116 5.2798 1.2748 47 1 6.9164 6.2285 0.0675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869707900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:34 Heat of formation + Delta-G solvation = -74.762652 kcal Electronic energy + Delta-G solvation = -28729.710964 eV Core-core repulsion = 24685.441190 eV Total energy + Delta-G solvation = -4044.269775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 8.58 seconds Orbital eigenvalues (eV) -41.26278 -39.74138 -38.86841 -36.99411 -36.40390 -35.38808 -33.50905 -32.88592 -31.34058 -31.11493 -29.60060 -27.37031 -25.36651 -24.36569 -24.11102 -22.41739 -21.70748 -21.06269 -19.05979 -18.70441 -17.91661 -17.81186 -17.03570 -16.89765 -16.60925 -16.34489 -15.67213 -15.03878 -14.80959 -14.68473 -14.38811 -14.24155 -14.17994 -13.80745 -13.71044 -13.61386 -13.17229 -12.77756 -12.72233 -12.56300 -12.46426 -12.31051 -12.28243 -12.09823 -11.89372 -11.71952 -11.34286 -11.18895 -11.15695 -11.06780 -10.89411 -10.72516 -10.62021 -10.48738 -10.26774 -10.21619 -10.00272 -9.65234 -9.26480 -8.66987 -8.05137 -6.15936 -4.16402 1.96085 2.27431 2.63901 2.73584 3.01327 3.21681 3.30370 3.32520 3.39125 3.48628 4.00911 4.18410 4.30566 4.32534 4.44249 4.54830 4.69174 4.70780 4.81844 4.88230 4.91737 4.93145 5.04832 5.12266 5.15635 5.17419 5.21938 5.32759 5.34471 5.41180 5.52627 5.64658 5.66611 5.70681 5.81019 5.87922 5.93093 5.95191 6.03668 6.09818 6.25546 6.47181 6.80782 7.05137 7.48608 7.50052 7.62575 7.89726 8.35424 8.64849 8.87360 9.42714 10.97202 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.003039 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.032477 B = 9212.259052 C =11092.710774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.111 3.889 5 N -0.587 5.587 6 C 0.217 3.783 7 C -0.535 4.535 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.894 5.894 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.262 1.262 15 C 0.512 3.488 16 O -0.507 6.507 17 C 0.046 3.954 18 O -0.321 6.321 19 C 0.494 3.506 20 O -0.511 6.511 21 C -0.119 4.119 22 C -0.148 4.148 23 C -0.113 4.113 24 H 0.116 0.884 25 C -0.089 4.089 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.080 4.080 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.032 0.968 34 H 0.046 0.954 35 H 0.266 0.734 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 13.462 17.817 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.104 4.104 3 C -0.093 4.093 4 C -0.015 4.015 5 N -0.321 5.321 6 C 0.097 3.903 7 C -0.573 4.573 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.532 5.532 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.187 1.187 15 C 0.297 3.703 16 O -0.380 6.380 17 C -0.032 4.032 18 O -0.235 6.235 19 C 0.337 3.663 20 O -0.399 6.399 21 C -0.120 4.120 22 C -0.185 4.185 23 C -0.132 4.132 24 H 0.134 0.866 25 C -0.126 4.126 26 C -0.160 4.160 27 C -0.158 4.158 28 C -0.117 4.117 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.317 13.384 17.636 22.260 hybrid contribution 0.423 -1.094 -0.001 1.173 sum -1.894 12.289 17.635 21.578 Atomic orbital electron populations 1.81226 1.12962 1.08887 1.08511 1.28984 0.95000 0.93134 0.93259 1.19878 0.81696 1.05651 1.02026 1.21437 0.81497 1.01045 0.97493 1.47800 1.05074 1.25157 1.54034 1.19785 0.92639 0.84103 0.93784 1.21295 1.37381 1.06048 0.92618 0.90578 1.24853 0.95100 0.98245 0.94671 1.69887 1.40949 1.36910 1.05430 0.86891 0.79028 0.84136 0.79953 1.20034 1.20910 1.18677 1.19727 0.88142 0.82620 0.79786 1.90743 1.13254 1.75579 1.58473 1.22957 0.91276 0.90018 0.98905 1.86564 1.39709 1.32754 1.64475 1.22711 0.87691 0.80650 0.75208 1.90653 1.16549 1.75691 1.57026 1.20558 0.98210 0.97527 0.95700 1.22954 1.03443 1.02006 0.90066 1.21986 1.00184 0.90388 1.00597 0.86632 1.21064 0.98426 0.93817 0.99288 1.21599 0.96925 0.98379 0.99142 1.21628 0.98172 0.94289 1.01727 1.20806 0.92790 0.98810 0.99325 0.86382 0.87592 0.90281 0.87926 0.95031 0.93588 0.92433 0.88301 0.88690 0.88142 0.87100 0.91229 0.90997 0.91548 0.91404 0.91616 0.90987 0.89864 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.37 18.54 42.15 0.78 -5.59 16 2 C 0.21 2.50 15.43 -20.76 -0.32 2.18 16 3 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 4 C 0.11 1.40 5.17 -4.04 -0.02 1.38 16 5 N -0.59 -10.19 2.46 -175.06 -0.43 -10.62 16 6 C 0.22 4.65 4.23 -5.20 -0.02 4.62 16 7 C -0.54 -14.24 9.94 -34.44 -0.34 -14.59 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 11 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 15 C 0.51 9.30 7.75 -10.98 -0.09 9.21 16 16 O -0.51 -11.55 16.08 -14.11 -0.23 -11.78 16 17 C 0.05 0.65 4.50 36.01 0.16 0.81 16 18 O -0.32 -4.92 9.41 -45.90 -0.43 -5.35 16 19 C 0.49 6.76 7.37 36.01 0.27 7.02 16 20 O -0.51 -7.70 15.82 -18.75 -0.30 -7.99 16 21 C -0.12 -1.26 2.56 -156.96 -0.40 -1.67 16 22 C -0.15 -1.24 9.22 -27.91 -0.26 -1.49 16 23 C -0.11 -1.00 5.49 -92.15 -0.51 -1.51 16 24 H 0.12 1.14 7.50 -51.93 -0.39 0.75 16 25 C -0.09 -0.60 5.86 -27.03 -0.16 -0.76 16 26 C -0.12 -0.86 5.94 -26.64 -0.16 -1.02 16 27 C -0.12 -0.90 5.70 -26.64 -0.15 -1.06 16 28 C -0.08 -0.80 5.22 -27.27 -0.14 -0.94 16 29 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.11 0.81 7.22 -51.93 -0.38 0.44 16 31 H 0.08 0.86 6.44 -51.93 -0.33 0.52 16 32 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.03 0.61 7.51 -51.93 -0.39 0.22 16 34 H 0.05 1.07 6.47 -51.93 -0.34 0.74 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.10 1.30 7.39 -51.93 -0.38 0.91 16 37 H 0.10 1.07 7.18 -51.92 -0.37 0.70 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.11 0.74 7.28 -51.93 -0.38 0.36 16 40 H 0.07 0.39 8.06 -51.93 -0.42 -0.03 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 44 H 0.07 0.43 7.12 -51.93 -0.37 0.06 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -34.83 392.00 -8.14 -42.97 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.13 Total: -0.84 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.41 Total: 3.50 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 1.13 Total: -41.95 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.96 Total: -25.12 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.83 -8.14 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869707900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.788 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.58 seconds