Wall clock time and date at job start Tue Mar 31 2020 22:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47104 * 121.35627 * 3 2 1 5 5 N 1.46496 * 109.47528 * 180.02562 * 4 3 2 6 6 C 1.46491 * 120.00453 * 89.99575 * 5 4 3 7 7 C 1.50702 * 109.46957 * 90.00133 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99985 * 180.27663 * 9 7 6 11 11 Si 1.86800 * 119.99777 * 0.28166 * 9 7 6 12 12 H 1.48498 * 109.47109 * 89.99834 * 11 9 7 13 13 H 1.48507 * 109.46754 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99405 * 11 9 7 15 15 C 1.34780 * 119.99526 * 270.00078 * 5 4 3 16 16 O 1.21285 * 119.99673 * 179.97438 * 15 5 4 17 17 C 1.50700 * 120.00400 * 359.97438 * 15 5 4 18 18 O 1.45197 * 109.47390 * 179.97438 * 17 15 5 19 19 C 1.34229 * 117.00024 * 179.97438 * 18 17 15 20 20 O 1.20829 * 119.99934 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99840 * 180.02562 * 19 18 17 22 22 C 1.52306 * 115.91449 * 248.17507 * 21 19 18 23 23 C 1.51368 * 60.10306 * 253.81584 * 22 21 19 24 24 H 1.08997 * 115.85378 * 108.01123 * 23 22 21 25 25 C 1.52543 * 117.52628 * 248.66163 * 23 22 21 26 26 C 1.52874 * 110.48456 * 89.28647 * 25 23 22 27 27 C 1.53295 * 108.58095 * 306.53497 * 26 25 23 28 28 C 1.52070 * 114.63591 * 34.42292 * 21 19 18 29 29 H 1.08997 * 109.47125 * 1.35779 * 3 2 1 30 30 H 1.08999 * 109.46828 * 241.35265 * 3 2 1 31 31 H 1.09005 * 109.47023 * 59.99431 * 4 3 2 32 32 H 1.09006 * 109.47021 * 300.00229 * 4 3 2 33 33 H 1.09004 * 109.47166 * 330.00399 * 6 5 4 34 34 H 1.08994 * 109.47507 * 210.00106 * 6 5 4 35 35 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.47359 * 300.00599 * 17 15 5 37 37 H 1.09008 * 109.46888 * 59.99948 * 17 15 5 38 38 H 1.09003 * 117.53820 * 0.84884 * 22 21 19 39 39 H 1.08992 * 117.54147 * 146.10195 * 22 21 19 40 40 H 1.09002 * 108.32748 * 329.51633 * 25 23 22 41 41 H 1.09002 * 110.03962 * 210.15083 * 25 23 22 42 42 H 1.09002 * 109.61530 * 186.81190 * 26 25 23 43 43 H 1.08998 * 109.76807 * 66.36003 * 26 25 23 44 44 H 1.08997 * 109.62435 * 314.71928 * 27 26 25 45 45 H 1.08997 * 109.76882 * 194.26186 * 27 26 25 46 46 H 1.08995 * 109.26737 * 285.88811 * 28 21 19 47 47 H 1.09000 * 109.27022 * 45.36160 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.7515 -1.2318 5 7 4.5826 0.7517 -1.2322 6 6 5.3151 -0.3315 -1.8926 7 6 5.5659 0.0366 -3.3323 8 1 5.2151 0.9829 -3.7168 9 6 6.2487 -0.8322 -4.1571 10 7 6.4723 -0.5086 -5.4121 11 14 6.8560 -2.4687 -3.4920 12 1 5.8070 -3.5018 -3.6859 13 1 8.0876 -2.8715 -4.2175 14 1 7.1563 -2.3338 -2.0440 15 6 5.2565 1.7485 -0.6248 16 8 6.4693 1.7484 -0.6248 17 6 4.5030 2.8630 0.0542 18 8 5.4465 3.8052 0.6290 19 6 4.9334 4.8647 1.2739 20 8 3.7356 5.0001 1.3558 21 6 5.8515 5.8853 1.8958 22 6 5.8526 5.9397 3.4179 23 6 5.1720 7.0343 2.6243 24 1 4.0824 7.0336 2.6511 25 6 5.8059 8.4216 2.6496 26 6 6.8304 8.5623 1.5238 27 6 7.8273 7.4020 1.6226 28 6 7.1422 6.1275 1.1291 29 1 2.9718 -1.0265 -0.0244 30 1 2.9711 0.4935 0.9019 31 1 2.7538 1.7787 -1.2075 32 1 2.7545 0.2587 -2.1337 33 1 4.7262 -1.2477 -1.8491 34 1 6.2676 -0.4875 -1.3863 35 1 6.9523 -1.1200 -5.9924 36 1 3.8764 3.3754 -0.6758 37 1 3.8762 2.4493 0.8442 38 1 5.2093 5.2371 3.9478 39 1 6.7926 6.1831 3.9128 40 1 6.3041 8.5533 3.6101 41 1 5.0369 9.1857 2.5361 42 1 7.3599 9.5095 1.6271 43 1 6.3246 8.5292 0.5588 44 1 8.1370 7.2728 2.6597 45 1 8.6996 7.6117 1.0037 46 1 7.8116 5.2798 1.2748 47 1 6.9164 6.2285 0.0675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869707900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:32 Heat of formation + Delta-G solvation = -94.559587 kcal Electronic energy + Delta-G solvation = -28730.569424 eV Core-core repulsion = 24685.441190 eV Total energy + Delta-G solvation = -4045.128234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.22904 -40.97503 -39.90496 -38.09177 -37.53238 -36.76676 -34.83664 -34.15707 -32.45968 -32.03590 -30.96075 -28.91006 -26.15520 -25.33756 -25.17505 -24.06125 -22.39467 -21.93708 -20.33824 -19.64803 -19.21777 -18.77841 -18.57175 -18.10849 -17.77960 -17.58731 -17.00801 -16.31452 -15.85715 -15.74543 -15.60733 -15.15143 -14.97658 -14.87868 -14.71787 -14.43183 -14.38323 -14.20573 -13.95201 -13.74270 -13.62561 -13.49956 -13.31486 -13.06201 -12.99454 -12.91327 -12.75321 -12.37939 -12.15252 -11.97384 -11.94048 -11.82399 -11.79262 -11.70678 -11.63391 -11.24134 -10.97636 -10.79469 -10.76044 -10.70231 -9.59388 -8.28029 -6.33653 0.93947 1.18020 1.39376 1.44696 1.52659 1.53847 1.74786 1.81841 2.26654 2.37346 2.65647 3.00203 3.09039 3.41098 3.50145 3.56631 3.64653 3.81463 3.86797 3.93754 4.04078 4.07710 4.10370 4.23966 4.31341 4.49660 4.50580 4.57880 4.69968 4.75398 4.75713 4.80775 4.92316 4.96886 5.03617 5.05270 5.07915 5.18656 5.24057 5.27977 5.34647 5.37988 5.49125 5.51334 5.53707 6.25855 6.44008 6.57656 6.60390 6.69871 7.17225 7.32821 8.88952 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.003039 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.032477 B = 9212.259052 C =11092.710774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.243 3.757 3 C -0.038 4.038 4 C 0.105 3.895 5 N -0.586 5.586 6 C 0.223 3.777 7 C -0.538 4.538 8 H 0.029 0.971 9 C 0.009 3.991 10 N -0.949 5.949 11 Si 0.946 3.054 12 H -0.252 1.252 13 H -0.291 1.291 14 H -0.243 1.243 15 C 0.509 3.491 16 O -0.563 6.563 17 C 0.051 3.949 18 O -0.341 6.341 19 C 0.492 3.508 20 O -0.529 6.529 21 C -0.142 4.142 22 C -0.132 4.132 23 C -0.107 4.107 24 H 0.104 0.896 25 C -0.086 4.086 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.078 4.078 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 13.336 20.947 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.074 4.074 3 C -0.079 4.079 4 C -0.019 4.019 5 N -0.318 5.318 6 C 0.102 3.898 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.189 4.189 10 N -0.589 5.589 11 Si 0.768 3.232 12 H -0.176 1.176 13 H -0.217 1.217 14 H -0.167 1.167 15 C 0.297 3.703 16 O -0.441 6.441 17 C -0.026 4.026 18 O -0.256 6.256 19 C 0.337 3.663 20 O -0.418 6.418 21 C -0.143 4.143 22 C -0.168 4.168 23 C -0.125 4.125 24 H 0.122 0.878 25 C -0.123 4.123 26 C -0.160 4.160 27 C -0.153 4.153 28 C -0.116 4.116 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.119 0.881 39 H 0.152 0.848 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.616 13.268 20.792 24.803 hybrid contribution 0.467 -0.951 -1.047 1.489 sum -2.148 12.317 19.745 23.370 Atomic orbital electron populations 1.81271 1.14574 1.10681 1.10168 1.29159 0.95009 0.91531 0.91693 1.19868 0.80045 1.06650 1.01373 1.21654 0.78510 1.02852 0.98913 1.47726 1.06905 1.24132 1.53029 1.19505 0.93361 0.86509 0.90445 1.21611 1.36559 1.04064 0.95428 0.95287 1.25876 0.95364 1.02886 0.94751 1.70065 1.42704 1.38844 1.07308 0.85741 0.78504 0.78978 0.79939 1.17625 1.21676 1.16683 1.20386 0.87689 0.83100 0.79168 1.90712 1.15785 1.76863 1.60729 1.22951 0.90637 0.88915 1.00068 1.86573 1.40603 1.33506 1.64898 1.23326 0.88023 0.80386 0.74549 1.90630 1.17320 1.76050 1.57829 1.20702 0.98258 0.98054 0.97257 1.23111 1.04319 1.01254 0.88140 1.22072 0.99687 0.91300 0.99475 0.87804 1.21116 0.98598 0.92496 1.00104 1.21602 0.96900 0.98944 0.98534 1.21628 0.98117 0.92965 1.02609 1.20763 0.92698 0.99851 0.98254 0.84463 0.84717 0.88455 0.88715 0.91524 0.95075 0.92463 0.87266 0.85033 0.88074 0.84802 0.89200 0.90215 0.89718 0.92990 0.89955 0.90637 0.91162 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.43 18.54 20.01 0.37 -13.06 16 2 C 0.24 5.04 15.43 89.44 1.38 6.42 16 3 C -0.04 -0.60 6.03 28.79 0.17 -0.42 16 4 C 0.11 2.42 5.17 86.38 0.45 2.87 16 5 N -0.59 -19.73 2.46 -826.16 -2.03 -21.76 16 6 C 0.22 9.37 4.23 85.64 0.36 9.73 16 7 C -0.54 -29.37 9.94 25.60 0.25 -29.11 16 8 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 9 C 0.01 0.50 5.47 84.66 0.46 0.97 16 10 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 11 Si 0.95 41.39 27.47 68.60 1.88 43.28 16 12 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 13 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 15 C 0.51 18.37 7.75 87.66 0.68 19.05 16 16 O -0.56 -26.32 16.08 15.75 0.25 -26.06 16 17 C 0.05 1.39 4.50 71.24 0.32 1.71 16 18 O -0.34 -10.47 9.41 -45.06 -0.42 -10.90 16 19 C 0.49 13.30 7.37 71.24 0.53 13.83 16 20 O -0.53 -15.52 15.82 21.95 0.35 -15.17 16 21 C -0.14 -2.91 2.56 -53.77 -0.14 -3.05 16 22 C -0.13 -1.91 9.22 29.83 0.27 -1.64 16 23 C -0.11 -1.71 5.49 -11.78 -0.06 -1.77 16 24 H 0.10 1.92 7.50 -2.39 -0.02 1.91 16 25 C -0.09 -0.94 5.86 30.40 0.18 -0.76 16 26 C -0.12 -1.48 5.94 30.65 0.18 -1.30 16 27 C -0.12 -1.56 5.70 30.65 0.17 -1.38 16 28 C -0.08 -1.57 5.22 30.25 0.16 -1.42 16 29 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.14 1.44 7.22 -2.39 -0.02 1.42 16 31 H 0.10 1.91 6.44 -2.38 -0.02 1.89 16 32 H 0.09 2.38 8.07 -2.38 -0.02 2.36 16 33 H 0.07 2.37 7.51 -2.38 -0.02 2.35 16 34 H 0.03 1.43 6.47 -2.39 -0.02 1.41 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.11 2.76 7.39 -2.39 -0.02 2.74 16 37 H 0.13 2.59 7.18 -2.38 -0.02 2.57 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 39 H 0.13 1.32 7.28 -2.39 -0.02 1.30 16 40 H 0.09 0.66 8.06 -2.39 -0.02 0.64 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.05 0.79 8.05 -2.39 -0.02 0.77 16 44 H 0.08 0.85 7.12 -2.39 -0.02 0.83 16 45 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -80.92 392.00 7.00 -73.92 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.92 Total: 14.07 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 5.37 Total: 13.73 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -1.36 Total: -92.87 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: 0.18 Total: -52.13 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.88 Total: 43.28 kcal Total: -80.92 7.00 -73.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869707900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.638 kcal (2) G-P(sol) polarization free energy of solvation -80.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds