Wall clock time and date at job start Tue Mar 31 2020 20:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46624 * 2 1 4 4 C 1.42895 * 113.99720 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47510 * 30.00596 * 4 3 2 6 6 C 1.50706 * 109.47557 * 270.00316 * 4 3 2 7 7 O 1.20824 * 119.99652 * 355.00031 * 6 4 3 8 8 O 1.34221 * 120.00185 * 174.99975 * 6 4 3 9 9 C 1.45197 * 117.00112 * 179.97438 * 8 6 4 10 10 C 1.50696 * 109.47607 * 180.02562 * 9 8 6 11 11 C 1.38635 * 119.74985 * 269.73319 * 10 9 8 12 12 C 1.37617 * 120.24687 * 179.71926 * 11 10 9 13 13 C 1.40716 * 119.74723 * 0.57065 * 12 11 10 14 14 C 1.41396 * 120.24644 * 179.68554 * 13 12 11 15 15 H 1.08005 * 119.99733 * 204.40359 * 14 13 12 16 16 C 1.39939 * 120.00101 * 24.40261 * 14 13 12 17 17 N 1.30820 * 120.00244 * 17.84696 * 16 14 13 18 18 Si 1.86804 * 120.00028 * 197.85075 * 16 14 13 19 19 H 1.48499 * 109.47197 * 89.99595 * 18 16 14 20 20 H 1.48506 * 109.47141 * 209.99804 * 18 16 14 21 21 H 1.48498 * 109.46874 * 329.99781 * 18 16 14 22 22 C 1.40719 * 119.51127 * 359.69821 * 13 12 11 23 23 C 1.37620 * 119.74095 * 0.02562 * 22 13 12 24 24 C 1.53005 * 109.47000 * 150.00366 * 4 3 2 25 25 H 1.08999 * 110.80134 * 63.63213 * 24 4 3 26 26 C 1.54809 * 110.90636 * 299.99820 * 24 4 3 27 27 C 1.54103 * 104.18984 * 220.92063 * 26 24 4 28 28 O 1.43748 * 107.29208 * 357.97408 * 27 26 24 29 29 C 1.44377 * 106.97439 * 26.51019 * 28 27 26 30 30 H 1.09010 * 109.46586 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47200 * 299.99152 * 1 2 3 32 32 H 1.08991 * 109.47466 * 60.00085 * 1 2 3 33 33 H 1.08996 * 109.47200 * 240.00847 * 2 1 3 34 34 H 1.08996 * 109.47108 * 120.00227 * 2 1 3 35 35 H 1.09007 * 109.47184 * 59.99815 * 9 8 6 36 36 H 1.08998 * 109.47118 * 300.00471 * 9 8 6 37 37 H 1.07993 * 119.87867 * 359.97096 * 11 10 9 38 38 H 1.08003 * 120.13271 * 180.27444 * 12 11 10 39 39 H 0.96997 * 120.00535 * 180.02562 * 17 16 14 40 40 H 1.07994 * 120.12787 * 179.97438 * 22 13 12 41 41 H 1.08006 * 119.87289 * 179.97438 * 23 22 13 42 42 H 1.09001 * 110.49007 * 339.60137 * 26 24 4 43 43 H 1.09000 * 110.48464 * 102.11275 * 26 24 4 44 44 H 1.08999 * 109.87725 * 117.39789 * 27 26 24 45 45 H 1.08998 * 109.87913 * 238.54986 * 27 26 24 46 46 H 1.09001 * 110.61651 * 201.43983 * 29 28 27 47 47 H 1.08999 * 110.61880 * 78.44119 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4307 1.4602 0.0006 5 1 3.8635 0.6017 -0.5130 6 6 3.9310 1.5001 1.4216 7 8 3.1445 1.5293 2.3383 8 8 5.2503 1.5030 1.6688 9 6 5.6599 1.5429 3.0613 10 6 7.1647 1.5409 3.1425 11 6 7.8478 0.3371 3.2207 12 6 9.2222 0.3232 3.2895 13 6 9.9335 1.5374 3.2925 14 6 11.3453 1.5356 3.3695 15 1 11.8659 2.3977 3.7597 16 6 12.0681 0.4168 2.9403 17 7 11.5018 -0.4683 2.1611 18 14 13.8416 0.1871 3.4802 19 1 13.8771 -0.5857 4.7478 20 1 14.5873 -0.5511 2.4293 21 1 14.4703 1.5156 3.6927 22 6 9.2293 2.7534 3.2184 23 6 7.8551 2.7432 3.1445 24 6 3.8407 2.7458 -0.7206 25 1 3.4725 3.6227 -0.1881 26 6 3.3427 2.7399 -2.1864 27 6 4.5190 3.3308 -2.9875 28 8 5.5469 3.6777 -2.0443 29 6 5.3788 2.8127 -0.9006 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.2665 0.6691 3.5809 36 1 5.2724 2.4483 3.5282 37 1 7.2997 -0.5933 3.2235 38 1 9.7528 -0.6158 3.3459 39 1 12.0026 -1.2440 1.8639 40 1 9.7651 3.6911 3.2204 41 1 7.3124 3.6753 3.0880 42 1 3.1316 1.7217 -2.5135 43 1 2.4556 3.3646 -2.2904 44 1 4.8971 2.5899 -3.6919 45 1 4.1919 4.2217 -3.5236 46 1 5.8500 3.2466 -0.0187 47 1 5.7846 1.8220 -1.1057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869948756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:49 Heat of formation + Delta-G solvation = -168.471468 kcal Electronic energy + Delta-G solvation = -28869.391918 eV Core-core repulsion = 24788.765872 eV Total energy + Delta-G solvation = -4080.626045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.69316 -39.28737 -38.16059 -37.55404 -35.95899 -33.92106 -33.47113 -31.17601 -30.88092 -29.81041 -29.39120 -27.50494 -26.35296 -23.96073 -23.24202 -22.69108 -21.31080 -21.10321 -20.58536 -20.07562 -18.07051 -17.41517 -17.17937 -16.77892 -16.40571 -15.97111 -15.58354 -15.40443 -15.12163 -15.04173 -14.40739 -14.16890 -13.86694 -13.71403 -13.52750 -12.95435 -12.80365 -12.56004 -12.50445 -12.43123 -12.06225 -12.01503 -11.77946 -11.74657 -11.56012 -11.46213 -11.26702 -11.21364 -11.01648 -10.86525 -10.83107 -10.63984 -10.46253 -10.20157 -9.82578 -9.74153 -9.60865 -9.48197 -9.24304 -7.58780 -7.47421 -6.88665 -4.48439 2.26596 2.35607 2.85287 2.98670 3.01873 3.04776 3.14382 3.41020 3.84278 3.85251 4.35318 4.49121 4.50191 4.69129 4.74561 4.81418 4.88851 4.97694 5.04899 5.12511 5.14863 5.28924 5.41975 5.57168 5.58800 5.61113 5.62595 5.65674 5.67205 5.78402 5.85651 5.91868 5.97961 6.04417 6.22463 6.28664 6.72849 6.77092 6.79236 6.85756 6.95691 7.15970 7.24151 7.49388 7.71556 7.93898 7.97642 7.99317 8.17256 8.51913 8.76696 8.84587 10.05020 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.002680 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.289305 B =10444.921748 C =11319.935710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.111 3.889 5 H 0.099 0.901 6 C 0.429 3.571 7 O -0.502 6.502 8 O -0.347 6.347 9 C 0.136 3.864 10 C -0.236 4.236 11 C -0.075 4.075 12 C -0.170 4.170 13 C 0.119 3.881 14 C -0.455 4.455 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.784 5.784 18 Si 0.910 3.090 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.229 4.229 23 C -0.063 4.063 24 C -0.114 4.114 25 H 0.098 0.902 26 C -0.140 4.140 27 C 0.044 3.956 28 O -0.372 6.372 29 C 0.059 3.941 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.283 0.717 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.928 0.015 -8.302 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 O -0.270 6.270 4 C 0.051 3.949 5 H 0.117 0.883 6 C 0.271 3.729 7 O -0.391 6.391 8 O -0.264 6.264 9 C 0.064 3.936 10 C -0.238 4.238 11 C -0.094 4.094 12 C -0.190 4.190 13 C 0.116 3.884 14 C -0.484 4.484 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.409 5.409 18 Si 0.735 3.265 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.248 4.248 23 C -0.081 4.081 24 C -0.133 4.133 25 H 0.116 0.884 26 C -0.178 4.178 27 C -0.033 4.033 28 O -0.291 6.291 29 C -0.018 4.018 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.126 0.874 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.043 0.125 -8.161 17.114 hybrid contribution 0.661 -0.683 0.383 1.025 sum -14.382 -0.559 -7.778 16.360 Atomic orbital electron populations 1.21706 0.93171 1.02358 1.03273 1.22667 0.96172 0.83247 1.00430 1.88011 1.17676 1.27146 1.94119 1.21530 0.83130 1.00427 0.89765 0.88308 1.24340 0.82222 0.73478 0.92860 1.90636 1.57120 1.44730 1.46574 1.86723 1.23486 1.82354 1.33849 1.21753 0.93727 1.00867 0.77248 1.18643 0.90624 0.94137 1.20381 1.20520 0.94706 0.94986 0.99202 1.21288 0.92010 0.98879 1.06782 1.17689 0.93285 0.90984 0.86449 1.19697 0.91594 1.00837 1.36263 0.90128 1.25970 1.01089 0.94816 0.92525 1.69822 1.38809 1.09679 1.22567 0.86270 0.81329 0.79629 0.79314 1.19157 1.20194 1.18480 1.20969 0.93115 0.97223 1.13532 1.20387 0.94245 0.95194 0.98290 1.22745 0.97622 0.96561 0.96337 0.88374 1.22883 0.99204 1.02520 0.93182 1.23194 0.87500 1.00154 0.92484 1.88937 1.52068 1.59016 1.29103 1.23614 0.92371 0.95891 0.89910 0.90957 0.91545 0.91824 0.92953 0.92892 0.92126 0.92061 0.89441 0.86269 0.90626 0.88690 0.89293 0.90456 0.89883 0.92258 0.89858 0.87351 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.51 6.46 37.16 0.24 0.75 16 3 O -0.35 -4.35 9.22 -55.13 -0.51 -4.86 16 4 C 0.11 1.38 2.06 -27.88 -0.06 1.33 16 5 H 0.10 1.04 7.73 -51.93 -0.40 0.64 16 6 C 0.43 6.87 7.21 36.01 0.26 7.13 16 7 O -0.50 -9.31 16.26 -25.46 -0.41 -9.72 16 8 O -0.35 -6.06 8.60 -39.23 -0.34 -6.40 16 9 C 0.14 2.52 5.58 36.00 0.20 2.72 16 10 C -0.24 -5.07 5.54 -104.33 -0.58 -5.65 16 11 C -0.08 -1.72 9.67 -39.66 -0.38 -2.10 16 12 C -0.17 -4.29 8.70 -38.87 -0.34 -4.62 16 13 C 0.12 3.07 5.58 -106.82 -0.60 2.47 16 14 C -0.46 -11.68 9.05 -37.74 -0.34 -12.02 16 15 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 16 C 0.08 1.82 5.14 -17.35 -0.09 1.73 16 17 N -0.78 -19.57 10.95 55.55 0.61 -18.97 16 18 Si 0.91 18.01 29.60 -169.99 -5.03 12.98 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 20 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 C -0.23 -5.47 9.80 -38.87 -0.38 -5.85 16 23 C -0.06 -1.37 9.67 -39.66 -0.38 -1.76 16 24 C -0.11 -1.32 2.87 -88.61 -0.25 -1.58 16 25 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 26 C -0.14 -1.28 6.31 -25.20 -0.16 -1.44 16 27 C 0.04 0.43 7.70 37.73 0.29 0.72 16 28 O -0.37 -5.17 11.52 -35.23 -0.41 -5.57 16 29 C 0.06 0.78 6.04 38.21 0.23 1.01 16 30 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 1.09 8.07 -51.92 -0.42 0.67 16 36 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.12 3.09 6.16 -52.48 -0.32 2.76 16 39 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 40 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 41 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 42 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.11 1.61 7.59 -51.93 -0.39 1.22 16 47 H 0.07 0.93 8.01 -51.93 -0.42 0.52 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -28.98 392.20 -9.54 -38.52 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.40 Total: 6.08 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.96 Total: -17.97 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.97 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.67 Total: -26.55 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.98 -9.54 -38.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869948756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.951 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds