Wall clock time and date at job start Tue Mar 31 2020 20:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46624 * 2 1 4 4 C 1.42895 * 113.99720 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47510 * 30.00596 * 4 3 2 6 6 C 1.50706 * 109.47557 * 270.00316 * 4 3 2 7 7 O 1.20824 * 119.99652 * 355.00031 * 6 4 3 8 8 O 1.34221 * 120.00185 * 174.99975 * 6 4 3 9 9 C 1.45197 * 117.00112 * 179.97438 * 8 6 4 10 10 C 1.50696 * 109.47607 * 180.02562 * 9 8 6 11 11 C 1.38635 * 119.74985 * 269.73319 * 10 9 8 12 12 C 1.37617 * 120.24687 * 179.71926 * 11 10 9 13 13 C 1.40716 * 119.74723 * 0.57065 * 12 11 10 14 14 C 1.41396 * 120.24644 * 179.68554 * 13 12 11 15 15 H 1.08005 * 119.99733 * 204.40359 * 14 13 12 16 16 C 1.39939 * 120.00101 * 24.40261 * 14 13 12 17 17 N 1.30820 * 120.00244 * 17.84696 * 16 14 13 18 18 Si 1.86804 * 120.00028 * 197.85075 * 16 14 13 19 19 H 1.48499 * 109.47197 * 89.99595 * 18 16 14 20 20 H 1.48506 * 109.47141 * 209.99804 * 18 16 14 21 21 H 1.48498 * 109.46874 * 329.99781 * 18 16 14 22 22 C 1.40719 * 119.51127 * 359.69821 * 13 12 11 23 23 C 1.37620 * 119.74095 * 0.02562 * 22 13 12 24 24 C 1.53005 * 109.47000 * 150.00366 * 4 3 2 25 25 H 1.08999 * 110.80134 * 63.63213 * 24 4 3 26 26 C 1.54809 * 110.90636 * 299.99820 * 24 4 3 27 27 C 1.54103 * 104.18984 * 220.92063 * 26 24 4 28 28 O 1.43748 * 107.29208 * 357.97408 * 27 26 24 29 29 C 1.44377 * 106.97439 * 26.51019 * 28 27 26 30 30 H 1.09010 * 109.46586 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47200 * 299.99152 * 1 2 3 32 32 H 1.08991 * 109.47466 * 60.00085 * 1 2 3 33 33 H 1.08996 * 109.47200 * 240.00847 * 2 1 3 34 34 H 1.08996 * 109.47108 * 120.00227 * 2 1 3 35 35 H 1.09007 * 109.47184 * 59.99815 * 9 8 6 36 36 H 1.08998 * 109.47118 * 300.00471 * 9 8 6 37 37 H 1.07993 * 119.87867 * 359.97096 * 11 10 9 38 38 H 1.08003 * 120.13271 * 180.27444 * 12 11 10 39 39 H 0.96997 * 120.00535 * 180.02562 * 17 16 14 40 40 H 1.07994 * 120.12787 * 179.97438 * 22 13 12 41 41 H 1.08006 * 119.87289 * 179.97438 * 23 22 13 42 42 H 1.09001 * 110.49007 * 339.60137 * 26 24 4 43 43 H 1.09000 * 110.48464 * 102.11275 * 26 24 4 44 44 H 1.08999 * 109.87725 * 117.39789 * 27 26 24 45 45 H 1.08998 * 109.87913 * 238.54986 * 27 26 24 46 46 H 1.09001 * 110.61651 * 201.43983 * 29 28 27 47 47 H 1.08999 * 110.61880 * 78.44119 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4307 1.4602 0.0006 5 1 3.8635 0.6017 -0.5130 6 6 3.9310 1.5001 1.4216 7 8 3.1445 1.5293 2.3383 8 8 5.2503 1.5030 1.6688 9 6 5.6599 1.5429 3.0613 10 6 7.1647 1.5409 3.1425 11 6 7.8478 0.3371 3.2207 12 6 9.2222 0.3232 3.2895 13 6 9.9335 1.5374 3.2925 14 6 11.3453 1.5356 3.3695 15 1 11.8659 2.3977 3.7597 16 6 12.0681 0.4168 2.9403 17 7 11.5018 -0.4683 2.1611 18 14 13.8416 0.1871 3.4802 19 1 13.8771 -0.5857 4.7478 20 1 14.5873 -0.5511 2.4293 21 1 14.4703 1.5156 3.6927 22 6 9.2293 2.7534 3.2184 23 6 7.8551 2.7432 3.1445 24 6 3.8407 2.7458 -0.7206 25 1 3.4725 3.6227 -0.1881 26 6 3.3427 2.7399 -2.1864 27 6 4.5190 3.3308 -2.9875 28 8 5.5469 3.6777 -2.0443 29 6 5.3788 2.8127 -0.9006 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.2665 0.6691 3.5809 36 1 5.2724 2.4483 3.5282 37 1 7.2997 -0.5933 3.2235 38 1 9.7528 -0.6158 3.3459 39 1 12.0026 -1.2440 1.8639 40 1 9.7651 3.6911 3.2204 41 1 7.3124 3.6753 3.0880 42 1 3.1316 1.7217 -2.5135 43 1 2.4556 3.3646 -2.2904 44 1 4.8971 2.5899 -3.6919 45 1 4.1919 4.2217 -3.5236 46 1 5.8500 3.2466 -0.0187 47 1 5.7846 1.8220 -1.1057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869948756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:32 Heat of formation + Delta-G solvation = -182.427549 kcal Electronic energy + Delta-G solvation = -28869.997099 eV Core-core repulsion = 24788.765872 eV Total energy + Delta-G solvation = -4081.231226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 15.81 seconds Orbital eigenvalues (eV) -41.90598 -40.36266 -39.54653 -38.92357 -37.37298 -35.70017 -34.41909 -32.60549 -31.93097 -31.23880 -30.71363 -29.07785 -27.56776 -25.56514 -24.16804 -23.52660 -22.96190 -22.38217 -21.84348 -21.60481 -19.28224 -19.22617 -18.26430 -17.93145 -17.56466 -17.20116 -16.96317 -16.61208 -16.29584 -16.02785 -15.79020 -15.55248 -15.37878 -15.10788 -14.51248 -14.31895 -14.02311 -13.98767 -13.85735 -13.54771 -13.45896 -13.30576 -12.98000 -12.85026 -12.78944 -12.66300 -12.59827 -12.36679 -12.27790 -12.18785 -12.10018 -11.76047 -11.69039 -11.63107 -11.50404 -11.29402 -11.06705 -10.71420 -10.66131 -9.44130 -9.33324 -8.69191 -6.40042 0.70386 1.00909 1.10901 1.37716 1.41491 1.51832 1.74215 2.19217 2.38603 2.69966 2.93799 3.42756 3.61148 3.63834 3.76052 3.86947 3.91541 4.06581 4.08210 4.11730 4.13214 4.25949 4.29370 4.39610 4.42872 4.46350 4.48914 4.53946 4.75001 4.82213 4.85916 4.89965 5.00309 5.00382 5.02609 5.11613 5.14811 5.24300 5.29904 5.38108 5.42111 5.64522 5.86054 5.88006 5.89981 6.05247 6.13683 6.31859 6.63972 6.66720 6.88348 6.96629 8.27364 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.002680 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.289305 B =10444.921748 C =11319.935710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 O -0.361 6.361 4 C 0.119 3.881 5 H 0.124 0.876 6 C 0.430 3.570 7 O -0.529 6.529 8 O -0.352 6.352 9 C 0.140 3.860 10 C -0.227 4.227 11 C -0.079 4.079 12 C -0.192 4.192 13 C 0.088 3.912 14 C -0.493 4.493 15 H 0.079 0.921 16 C 0.036 3.964 17 N -0.816 5.816 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.258 1.258 22 C -0.245 4.245 23 C -0.064 4.064 24 C -0.109 4.109 25 H 0.088 0.912 26 C -0.130 4.130 27 C 0.037 3.963 28 O -0.400 6.400 29 C 0.059 3.941 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.291 0.709 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.284 -0.406 -9.683 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 O -0.279 6.279 4 C 0.059 3.941 5 H 0.141 0.859 6 C 0.273 3.727 7 O -0.419 6.419 8 O -0.269 6.269 9 C 0.068 3.932 10 C -0.229 4.229 11 C -0.097 4.097 12 C -0.212 4.212 13 C 0.086 3.914 14 C -0.521 4.521 15 H 0.097 0.903 16 C -0.180 4.180 17 N -0.441 5.441 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.264 4.264 23 C -0.082 4.082 24 C -0.128 4.128 25 H 0.106 0.894 26 C -0.167 4.167 27 C -0.040 4.040 28 O -0.319 6.319 29 C -0.018 4.018 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.117 0.883 46 H 0.103 0.897 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.426 -0.293 -9.555 19.005 hybrid contribution 0.882 -0.524 0.767 1.281 sum -15.544 -0.817 -8.788 17.875 Atomic orbital electron populations 1.21726 0.91878 1.03637 1.02958 1.22927 0.97302 0.82217 1.00990 1.88017 1.17249 1.28802 1.93856 1.21609 0.83527 1.01716 0.87216 0.85877 1.25175 0.81128 0.72116 0.94283 1.90624 1.57416 1.46054 1.47797 1.86694 1.24825 1.82641 1.32718 1.21571 0.91695 1.01725 0.78205 1.18923 0.92324 0.93487 1.18140 1.20756 0.94050 0.96466 0.98463 1.21258 0.93069 0.98219 1.08630 1.18036 0.94036 0.91919 0.87429 1.19930 0.92060 1.02002 1.38148 0.90336 1.26797 1.05353 0.93982 0.91900 1.69864 1.40714 1.10302 1.23263 0.85178 0.75805 0.79592 0.79020 1.18620 1.19124 1.18188 1.21163 0.94190 0.96980 1.14068 1.20681 0.93712 0.96610 0.97215 1.22653 0.96402 0.95750 0.97961 0.89362 1.22870 0.99136 1.03926 0.90773 1.23447 0.86969 1.01442 0.92099 1.88905 1.53702 1.59481 1.29845 1.23503 0.93499 0.95535 0.89271 0.88921 0.93114 0.90848 0.90257 0.94418 0.91404 0.91184 0.87531 0.87749 0.89856 0.88121 0.86679 0.88598 0.88606 0.90975 0.88340 0.89701 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.04 0.72 6.46 71.98 0.46 1.19 16 3 O -0.36 -8.10 9.22 -129.95 -1.20 -9.30 16 4 C 0.12 2.72 2.06 29.85 0.06 2.78 16 5 H 0.12 2.23 7.73 -2.38 -0.02 2.21 16 6 C 0.43 13.24 7.21 71.24 0.51 13.76 16 7 O -0.53 -19.14 16.26 28.39 0.46 -18.68 16 8 O -0.35 -11.95 8.60 -51.33 -0.44 -12.39 16 9 C 0.14 5.06 5.58 71.23 0.40 5.45 16 10 C -0.23 -9.66 5.54 -19.68 -0.11 -9.77 16 11 C -0.08 -3.61 9.67 22.22 0.21 -3.40 16 12 C -0.19 -9.99 8.70 22.73 0.20 -9.79 16 13 C 0.09 4.73 5.58 -21.29 -0.12 4.61 16 14 C -0.49 -26.18 9.05 23.46 0.21 -25.97 16 15 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 16 C 0.04 1.77 5.14 85.26 0.44 2.21 16 17 N -0.82 -41.76 10.95 21.82 0.24 -41.52 16 18 Si 0.98 37.29 29.60 68.60 2.03 39.32 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 20 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 22 C -0.24 -11.93 9.80 22.73 0.22 -11.71 16 23 C -0.06 -2.79 9.67 22.22 0.21 -2.57 16 24 C -0.11 -2.34 2.87 -9.49 -0.03 -2.37 16 25 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 26 C -0.13 -1.98 6.31 31.58 0.20 -1.78 16 27 C 0.04 0.64 7.70 72.36 0.56 1.20 16 28 O -0.40 -10.72 11.52 -148.98 -1.72 -12.44 16 29 C 0.06 1.52 6.04 72.67 0.44 1.96 16 30 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 2.35 8.07 -2.38 -0.02 2.33 16 36 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 37 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 39 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 40 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 41 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 42 H 0.10 1.14 7.86 -2.39 -0.02 1.12 16 43 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 2.56 7.59 -2.39 -0.02 2.54 16 47 H 0.07 1.82 8.01 -2.39 -0.02 1.80 16 Total: -1.00 -64.19 392.20 4.95 -59.24 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.95 Total: 31.24 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 4.62 Total: -35.48 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.24 Total: -41.52 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -2.89 Total: -52.80 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -64.19 4.95 -59.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869948756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.184 kcal (2) G-P(sol) polarization free energy of solvation -64.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.81 seconds