Wall clock time and date at job start Tue Mar 31 2020 20:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47064 * 2 1 4 4 C 1.42905 * 113.99950 * 182.28515 * 3 2 1 5 5 H 1.08996 * 109.46856 * 4.00131 * 4 3 2 6 6 C 1.50704 * 109.46707 * 124.00361 * 4 3 2 7 7 O 1.20819 * 120.00033 * 4.99626 * 6 4 3 8 8 O 1.34234 * 119.99580 * 185.00203 * 6 4 3 9 9 C 1.45197 * 116.99760 * 179.97438 * 8 6 4 10 10 C 1.50706 * 109.46809 * 179.97438 * 9 8 6 11 11 C 1.38632 * 119.74924 * 269.72659 * 10 9 8 12 12 C 1.37618 * 120.24622 * 179.76757 * 11 10 9 13 13 C 1.40716 * 119.74416 * 0.48785 * 12 11 10 14 14 C 1.41396 * 120.24760 * 179.79433 * 13 12 11 15 15 H 1.07992 * 120.00393 * 206.38522 * 14 13 12 16 16 C 1.39952 * 120.00009 * 26.37860 * 14 13 12 17 17 N 1.30828 * 119.99692 * 8.43271 * 16 14 13 18 18 Si 1.86794 * 120.00273 * 188.43099 * 16 14 13 19 19 H 1.48498 * 109.47396 * 89.99786 * 18 16 14 20 20 H 1.48504 * 109.47328 * 210.00285 * 18 16 14 21 21 H 1.48501 * 109.47165 * 329.99957 * 18 16 14 22 22 C 1.40718 * 119.51347 * 359.76504 * 13 12 11 23 23 C 1.37624 * 119.74293 * 0.02562 * 22 13 12 24 24 C 1.53002 * 109.47150 * 244.00271 * 4 3 2 25 25 H 1.09008 * 110.82963 * 294.03806 * 24 4 3 26 26 C 1.54808 * 110.90889 * 57.67960 * 24 4 3 27 27 C 1.54103 * 104.18513 * 139.07780 * 26 24 4 28 28 O 1.43744 * 107.42074 * 1.95847 * 27 26 24 29 29 C 1.44576 * 106.86966 * 333.66854 * 28 27 26 30 30 H 1.09004 * 109.47004 * 60.00052 * 1 2 3 31 31 H 1.08999 * 109.46970 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47095 * 300.00119 * 1 2 3 33 33 H 1.08996 * 109.47095 * 239.99881 * 2 1 3 34 34 H 1.09004 * 109.47004 * 119.99948 * 2 1 3 35 35 H 1.08991 * 109.47367 * 300.00118 * 9 8 6 36 36 H 1.09004 * 109.47029 * 60.00481 * 9 8 6 37 37 H 1.08004 * 119.87813 * 359.97438 * 11 10 9 38 38 H 1.07998 * 120.12818 * 180.27534 * 12 11 10 39 39 H 0.96999 * 119.99940 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.13130 * 180.02562 * 22 13 12 41 41 H 1.07996 * 119.87805 * 180.02562 * 23 22 13 42 42 H 1.09005 * 110.48725 * 20.40609 * 26 24 4 43 43 H 1.08997 * 110.60389 * 257.81328 * 26 24 4 44 44 H 1.08998 * 109.87665 * 121.45680 * 27 26 24 45 45 H 1.09002 * 109.87809 * 242.45491 * 27 26 24 46 46 H 1.08997 * 110.50736 * 281.37836 * 29 28 27 47 47 H 1.09002 * 110.63811 * 158.44410 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4299 1.4604 -0.0521 5 1 3.8697 0.4683 -0.1536 6 6 3.8235 2.3079 -1.2344 7 8 2.9721 2.8419 -1.9051 8 8 5.1200 2.4694 -1.5425 9 6 5.4253 3.2984 -2.6948 10 6 6.9190 3.3642 -2.8845 11 6 7.6475 4.3678 -2.2650 12 6 9.0125 4.4347 -2.4274 13 6 9.6669 3.4855 -3.2342 14 6 11.0683 3.5469 -3.4119 15 1 11.5176 3.1402 -4.3057 16 6 11.8732 4.1347 -2.4295 17 7 11.3548 4.4778 -1.2783 18 14 13.6875 4.4295 -2.7617 19 1 13.8685 5.7753 -3.3627 20 1 14.4436 4.3513 -1.4859 21 1 14.1931 3.3961 -3.7007 22 6 8.9165 2.4744 -3.8624 23 6 7.5530 2.4243 -3.6823 24 6 3.9370 2.1138 1.2351 25 1 3.5945 3.1462 1.3068 26 6 3.5003 1.2996 2.4772 27 6 4.7385 1.3167 3.3945 28 8 5.7459 2.1082 2.7427 29 6 5.4825 2.0365 1.3230 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.9643 2.8687 -3.5840 36 1 5.0354 4.3034 -2.5329 37 1 7.1425 5.0980 -1.6500 38 1 9.5787 5.2148 -1.9404 39 1 11.9125 4.8856 -0.5975 40 1 9.4085 1.7405 -4.4834 41 1 6.9750 1.6489 -4.1630 42 1 3.2492 0.2773 2.1943 43 1 2.6535 1.7768 2.9704 44 1 4.4816 1.7619 4.3556 45 1 5.1039 0.3005 3.5428 46 1 5.8434 1.0924 0.9149 47 1 5.9391 2.8795 0.8044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869948759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:07 Heat of formation + Delta-G solvation = -165.649279 kcal Electronic energy + Delta-G solvation = -28879.025360 eV Core-core repulsion = 24798.521694 eV Total energy + Delta-G solvation = -4080.503666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 14.93 seconds Orbital eigenvalues (eV) -40.66554 -39.31368 -38.13738 -37.58159 -35.97874 -33.88705 -33.36650 -31.30594 -30.84685 -29.80486 -29.36355 -27.49996 -26.37470 -23.91490 -23.17166 -22.87434 -21.31944 -21.09145 -20.59360 -20.05457 -17.94774 -17.39950 -17.12852 -16.81284 -16.49392 -15.93805 -15.58204 -15.39553 -15.19853 -15.06673 -14.43869 -14.03505 -13.83978 -13.69571 -13.57376 -12.98784 -12.84009 -12.63299 -12.50743 -12.36786 -12.12826 -12.03013 -11.74973 -11.70733 -11.61932 -11.48040 -11.23867 -11.17568 -10.99743 -10.94666 -10.83493 -10.47312 -10.39749 -10.18849 -9.83126 -9.73200 -9.64062 -9.43510 -9.30132 -7.57522 -7.41914 -6.78112 -4.49519 2.24996 2.33399 2.80933 2.99918 3.03372 3.06235 3.13976 3.55924 3.85495 3.86760 4.33427 4.45469 4.54559 4.60306 4.72137 4.76543 4.86319 4.94928 5.03416 5.05621 5.14587 5.28886 5.36080 5.52619 5.59768 5.60040 5.61246 5.63225 5.66963 5.75607 5.82803 5.91587 5.99210 6.05091 6.22619 6.30566 6.74060 6.76951 6.79141 6.86472 6.98015 7.17802 7.29345 7.51508 7.72366 7.96177 7.99997 8.02062 8.19779 8.55605 8.79665 8.86543 10.11495 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.002726 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.742553 B =10269.445273 C =11539.966404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.352 6.352 4 C 0.111 3.889 5 H 0.101 0.899 6 C 0.443 3.557 7 O -0.498 6.498 8 O -0.347 6.347 9 C 0.136 3.864 10 C -0.232 4.232 11 C -0.078 4.078 12 C -0.165 4.165 13 C 0.115 3.885 14 C -0.453 4.453 15 H 0.079 0.921 16 C 0.070 3.930 17 N -0.793 5.793 18 Si 0.915 3.085 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.262 1.262 22 C -0.227 4.227 23 C -0.067 4.067 24 C -0.126 4.126 25 H 0.098 0.902 26 C -0.142 4.142 27 C 0.044 3.956 28 O -0.372 6.372 29 C 0.057 3.943 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.282 0.718 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.349 -7.842 7.180 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.051 3.949 5 H 0.119 0.881 6 C 0.284 3.716 7 O -0.386 6.386 8 O -0.264 6.264 9 C 0.064 3.936 10 C -0.233 4.233 11 C -0.097 4.097 12 C -0.185 4.185 13 C 0.112 3.888 14 C -0.482 4.482 15 H 0.097 0.903 16 C -0.148 4.148 17 N -0.418 5.418 18 Si 0.739 3.261 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.247 4.247 23 C -0.086 4.086 24 C -0.146 4.146 25 H 0.116 0.884 26 C -0.180 4.180 27 C -0.033 4.033 28 O -0.290 6.290 29 C -0.019 4.019 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.148 0.852 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.455 -7.290 7.288 17.754 hybrid contribution 0.648 -0.221 -0.299 0.747 sum -13.807 -7.511 6.989 17.201 Atomic orbital electron populations 1.21726 0.93182 1.02322 1.03484 1.22746 0.96201 0.83221 1.00337 1.88031 1.17964 1.26893 1.94189 1.21405 0.83495 0.98950 0.91030 0.88139 1.23711 0.82154 0.80337 0.85367 1.90639 1.51726 1.45442 1.50746 1.86705 1.25364 1.65381 1.48972 1.21776 0.94782 0.92607 0.84428 1.18687 0.91306 1.03353 1.09958 1.20586 0.94627 0.96856 0.97643 1.21537 0.92196 1.00987 1.03753 1.17729 0.93127 0.88761 0.89166 1.19695 0.91649 1.32684 1.04180 0.90327 1.25976 1.01577 0.93000 0.94199 1.69773 1.38012 1.30124 1.03889 0.86195 0.81239 0.79786 0.78834 1.19258 1.20152 1.18602 1.21001 0.93301 1.01382 1.08968 1.20378 0.94472 0.96203 0.97499 1.22989 0.97339 1.01591 0.92636 0.88356 1.22919 0.99100 1.00675 0.95312 1.23165 0.87477 0.95995 0.96655 1.88991 1.50731 1.70908 1.18411 1.23660 0.91989 1.03969 0.82290 0.91541 0.90922 0.91694 0.93000 0.92844 0.92089 0.91919 0.89280 0.85249 0.90704 0.88752 0.89380 0.90748 0.89888 0.89898 0.92356 0.91273 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.45 6.28 37.16 0.23 0.68 16 3 O -0.35 -4.35 9.16 -55.14 -0.50 -4.86 16 4 C 0.11 1.38 2.22 -27.88 -0.06 1.31 16 5 H 0.10 1.03 7.51 -51.93 -0.39 0.64 16 6 C 0.44 7.18 7.26 36.01 0.26 7.44 16 7 O -0.50 -9.43 16.25 -25.46 -0.41 -9.85 16 8 O -0.35 -6.08 8.72 -39.27 -0.34 -6.42 16 9 C 0.14 2.53 5.58 36.01 0.20 2.73 16 10 C -0.23 -4.97 5.54 -104.33 -0.58 -5.55 16 11 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 12 C -0.17 -4.19 8.69 -38.87 -0.34 -4.53 16 13 C 0.11 2.98 5.59 -106.82 -0.60 2.38 16 14 C -0.45 -11.65 9.08 -37.74 -0.34 -11.99 16 15 H 0.08 1.93 7.86 -52.49 -0.41 1.52 16 16 C 0.07 1.71 5.31 -17.34 -0.09 1.62 16 17 N -0.79 -19.96 10.57 55.55 0.59 -19.37 16 18 Si 0.92 18.22 29.57 -169.99 -5.03 13.19 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 23 C -0.07 -1.46 9.67 -39.66 -0.38 -1.85 16 24 C -0.13 -1.49 2.86 -88.61 -0.25 -1.74 16 25 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 26 C -0.14 -1.29 6.26 -25.20 -0.16 -1.45 16 27 C 0.04 0.44 7.69 37.73 0.29 0.73 16 28 O -0.37 -5.29 11.54 -35.23 -0.41 -5.69 16 29 C 0.06 0.78 6.15 38.21 0.24 1.01 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.37 6.82 -51.93 -0.35 0.01 16 35 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 36 H 0.06 1.13 8.07 -51.93 -0.42 0.72 16 37 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.13 3.39 5.94 -52.49 -0.31 3.08 16 39 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 40 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.07 0.56 6.46 -51.93 -0.34 0.23 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 47 H 0.11 1.69 7.62 -51.93 -0.40 1.30 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -29.40 388.98 -9.45 -38.84 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.24 Total: 6.19 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -1.97 Total: -17.90 kcal Atomic # 7 Polarization: -19.96 SS G_CDS: 0.59 Total: -19.37 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.67 Total: -26.82 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.40 -9.45 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869948759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.806 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.93 seconds