Wall clock time and date at job start Tue Mar 31 2020 20:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47064 * 2 1 4 4 C 1.42905 * 113.99950 * 182.28515 * 3 2 1 5 5 H 1.08996 * 109.46856 * 4.00131 * 4 3 2 6 6 C 1.50704 * 109.46707 * 124.00361 * 4 3 2 7 7 O 1.20819 * 120.00033 * 4.99626 * 6 4 3 8 8 O 1.34234 * 119.99580 * 185.00203 * 6 4 3 9 9 C 1.45197 * 116.99760 * 179.97438 * 8 6 4 10 10 C 1.50706 * 109.46809 * 179.97438 * 9 8 6 11 11 C 1.38632 * 119.74924 * 269.72659 * 10 9 8 12 12 C 1.37618 * 120.24622 * 179.76757 * 11 10 9 13 13 C 1.40716 * 119.74416 * 0.48785 * 12 11 10 14 14 C 1.41396 * 120.24760 * 179.79433 * 13 12 11 15 15 H 1.07992 * 120.00393 * 206.38522 * 14 13 12 16 16 C 1.39952 * 120.00009 * 26.37860 * 14 13 12 17 17 N 1.30828 * 119.99692 * 8.43271 * 16 14 13 18 18 Si 1.86794 * 120.00273 * 188.43099 * 16 14 13 19 19 H 1.48498 * 109.47396 * 89.99786 * 18 16 14 20 20 H 1.48504 * 109.47328 * 210.00285 * 18 16 14 21 21 H 1.48501 * 109.47165 * 329.99957 * 18 16 14 22 22 C 1.40718 * 119.51347 * 359.76504 * 13 12 11 23 23 C 1.37624 * 119.74293 * 0.02562 * 22 13 12 24 24 C 1.53002 * 109.47150 * 244.00271 * 4 3 2 25 25 H 1.09008 * 110.82963 * 294.03806 * 24 4 3 26 26 C 1.54808 * 110.90889 * 57.67960 * 24 4 3 27 27 C 1.54103 * 104.18513 * 139.07780 * 26 24 4 28 28 O 1.43744 * 107.42074 * 1.95847 * 27 26 24 29 29 C 1.44576 * 106.86966 * 333.66854 * 28 27 26 30 30 H 1.09004 * 109.47004 * 60.00052 * 1 2 3 31 31 H 1.08999 * 109.46970 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47095 * 300.00119 * 1 2 3 33 33 H 1.08996 * 109.47095 * 239.99881 * 2 1 3 34 34 H 1.09004 * 109.47004 * 119.99948 * 2 1 3 35 35 H 1.08991 * 109.47367 * 300.00118 * 9 8 6 36 36 H 1.09004 * 109.47029 * 60.00481 * 9 8 6 37 37 H 1.08004 * 119.87813 * 359.97438 * 11 10 9 38 38 H 1.07998 * 120.12818 * 180.27534 * 12 11 10 39 39 H 0.96999 * 119.99940 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.13130 * 180.02562 * 22 13 12 41 41 H 1.07996 * 119.87805 * 180.02562 * 23 22 13 42 42 H 1.09005 * 110.48725 * 20.40609 * 26 24 4 43 43 H 1.08997 * 110.60389 * 257.81328 * 26 24 4 44 44 H 1.08998 * 109.87665 * 121.45680 * 27 26 24 45 45 H 1.09002 * 109.87809 * 242.45491 * 27 26 24 46 46 H 1.08997 * 110.50736 * 281.37836 * 29 28 27 47 47 H 1.09002 * 110.63811 * 158.44410 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4299 1.4604 -0.0521 5 1 3.8697 0.4683 -0.1536 6 6 3.8235 2.3079 -1.2344 7 8 2.9721 2.8419 -1.9051 8 8 5.1200 2.4694 -1.5425 9 6 5.4253 3.2984 -2.6948 10 6 6.9190 3.3642 -2.8845 11 6 7.6475 4.3678 -2.2650 12 6 9.0125 4.4347 -2.4274 13 6 9.6669 3.4855 -3.2342 14 6 11.0683 3.5469 -3.4119 15 1 11.5176 3.1402 -4.3057 16 6 11.8732 4.1347 -2.4295 17 7 11.3548 4.4778 -1.2783 18 14 13.6875 4.4295 -2.7617 19 1 13.8685 5.7753 -3.3627 20 1 14.4436 4.3513 -1.4859 21 1 14.1931 3.3961 -3.7007 22 6 8.9165 2.4744 -3.8624 23 6 7.5530 2.4243 -3.6823 24 6 3.9370 2.1138 1.2351 25 1 3.5945 3.1462 1.3068 26 6 3.5003 1.2996 2.4772 27 6 4.7385 1.3167 3.3945 28 8 5.7459 2.1082 2.7427 29 6 5.4825 2.0365 1.3230 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.9643 2.8687 -3.5840 36 1 5.0354 4.3034 -2.5329 37 1 7.1425 5.0980 -1.6500 38 1 9.5787 5.2148 -1.9404 39 1 11.9125 4.8856 -0.5975 40 1 9.4085 1.7405 -4.4834 41 1 6.9750 1.6489 -4.1630 42 1 3.2492 0.2773 2.1943 43 1 2.6535 1.7768 2.9704 44 1 4.4816 1.7619 4.3556 45 1 5.1039 0.3005 3.5428 46 1 5.8434 1.0924 0.9149 47 1 5.9391 2.8795 0.8044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869948759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:37 Heat of formation + Delta-G solvation = -180.235282 kcal Electronic energy + Delta-G solvation = -28879.657856 eV Core-core repulsion = 24798.521694 eV Total energy + Delta-G solvation = -4081.136163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 26.45 seconds Orbital eigenvalues (eV) -41.87349 -40.41342 -39.51769 -38.91263 -37.40948 -35.67857 -34.30321 -32.57777 -32.02051 -31.22341 -30.68826 -29.07273 -27.59500 -25.55607 -23.92095 -23.78724 -22.93950 -22.39923 -21.83160 -21.62092 -19.27192 -19.09326 -18.19470 -17.97690 -17.56396 -17.23620 -16.90744 -16.75173 -16.09481 -16.04613 -15.85089 -15.63365 -15.39023 -14.94160 -14.51955 -14.34172 -14.04624 -13.98056 -13.84112 -13.52630 -13.44780 -13.23686 -13.16229 -12.82807 -12.74320 -12.61668 -12.58963 -12.41710 -12.26696 -12.09916 -12.07190 -11.77580 -11.73594 -11.57710 -11.46950 -11.26043 -11.11896 -10.72775 -10.59871 -9.43151 -9.28347 -8.59823 -6.42085 0.68643 1.02598 1.11935 1.37739 1.40015 1.52520 1.67248 2.20174 2.55468 2.75708 2.93387 3.39935 3.58650 3.64240 3.75614 3.83523 3.88431 4.06505 4.08373 4.10495 4.15600 4.27084 4.29221 4.39935 4.45849 4.46626 4.49511 4.55617 4.73932 4.83719 4.84973 4.88300 4.98030 5.02040 5.03788 5.11928 5.12350 5.27482 5.32039 5.41168 5.43105 5.66109 5.87752 5.88344 5.94194 6.07594 6.15915 6.32886 6.66758 6.68254 6.90352 6.98205 8.32171 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.002726 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.742553 B =10269.445273 C =11539.966404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 O -0.370 6.370 4 C 0.121 3.879 5 H 0.128 0.872 6 C 0.442 3.558 7 O -0.528 6.528 8 O -0.351 6.351 9 C 0.140 3.860 10 C -0.222 4.222 11 C -0.083 4.083 12 C -0.189 4.189 13 C 0.083 3.917 14 C -0.489 4.489 15 H 0.079 0.921 16 C 0.029 3.971 17 N -0.826 5.826 18 Si 0.988 3.012 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.257 1.257 22 C -0.240 4.240 23 C -0.067 4.067 24 C -0.121 4.121 25 H 0.083 0.917 26 C -0.131 4.131 27 C 0.036 3.964 28 O -0.402 6.402 29 C 0.057 3.943 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.288 0.712 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.613 -9.737 7.964 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 O -0.289 6.289 4 C 0.061 3.939 5 H 0.146 0.854 6 C 0.286 3.714 7 O -0.417 6.417 8 O -0.268 6.268 9 C 0.068 3.932 10 C -0.224 4.224 11 C -0.102 4.102 12 C -0.209 4.209 13 C 0.081 3.919 14 C -0.518 4.518 15 H 0.097 0.903 16 C -0.186 4.186 17 N -0.452 5.452 18 Si 0.808 3.192 19 H -0.187 1.187 20 H -0.193 1.193 21 H -0.181 1.181 22 C -0.259 4.259 23 C -0.085 4.085 24 C -0.140 4.140 25 H 0.102 0.898 26 C -0.168 4.168 27 C -0.040 4.040 28 O -0.322 6.322 29 C -0.020 4.020 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.746 -9.200 8.080 19.946 hybrid contribution 0.826 0.323 -0.506 1.022 sum -14.919 -8.877 7.574 18.941 Atomic orbital electron populations 1.21760 0.92412 1.03684 1.02722 1.23070 0.96897 0.81761 1.01814 1.88031 1.17478 1.29375 1.94050 1.21418 0.84166 0.99264 0.89075 0.85407 1.24579 0.81001 0.79980 0.85880 1.90625 1.52169 1.46853 1.52051 1.86676 1.26670 1.65090 1.48379 1.21598 0.92742 0.93360 0.85536 1.18963 0.92856 1.02118 1.08414 1.20792 0.93994 0.97656 0.97737 1.21489 0.93222 1.01238 1.04928 1.18081 0.93922 0.89716 0.90173 1.19945 0.92193 1.34668 1.05006 0.90292 1.26837 1.06045 0.92136 0.93542 1.69845 1.39810 1.30787 1.04734 0.85107 0.75418 0.79736 0.78889 1.18664 1.19312 1.18107 1.21213 0.94323 1.01242 1.09123 1.20697 0.93996 0.96761 0.97074 1.22877 0.95934 1.01464 0.93731 0.89830 1.22905 0.98894 1.01567 0.93471 1.23432 0.87028 0.96460 0.97053 1.88957 1.52479 1.72071 1.18680 1.23551 0.93204 1.02966 0.82233 0.93219 0.88496 0.91554 0.92699 0.90116 0.90772 0.91627 0.87874 0.86984 0.90127 0.87827 0.86285 0.88405 0.88674 0.88574 0.90767 0.90657 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.04 0.57 6.28 71.98 0.45 1.03 16 3 O -0.37 -8.27 9.16 -129.95 -1.19 -9.46 16 4 C 0.12 2.73 2.22 29.85 0.07 2.80 16 5 H 0.13 2.19 7.51 -2.39 -0.02 2.18 16 6 C 0.44 13.82 7.26 71.24 0.52 14.33 16 7 O -0.53 -19.56 16.25 28.40 0.46 -19.10 16 8 O -0.35 -11.97 8.72 -51.45 -0.45 -12.42 16 9 C 0.14 5.06 5.58 71.24 0.40 5.46 16 10 C -0.22 -9.45 5.54 -19.67 -0.11 -9.56 16 11 C -0.08 -3.88 9.67 22.22 0.21 -3.67 16 12 C -0.19 -9.98 8.69 22.73 0.20 -9.78 16 13 C 0.08 4.48 5.59 -21.29 -0.12 4.36 16 14 C -0.49 -26.00 9.08 23.46 0.21 -25.79 16 15 H 0.08 4.01 7.86 -2.91 -0.02 3.99 16 16 C 0.03 1.43 5.31 85.26 0.45 1.88 16 17 N -0.83 -43.01 10.57 21.83 0.23 -42.78 16 18 Si 0.99 37.82 29.57 68.60 2.03 39.85 16 19 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 21 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 22 C -0.24 -11.52 9.80 22.73 0.22 -11.30 16 23 C -0.07 -2.87 9.67 22.22 0.21 -2.66 16 24 C -0.12 -2.65 2.86 -9.49 -0.03 -2.68 16 25 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 26 C -0.13 -1.97 6.26 31.58 0.20 -1.77 16 27 C 0.04 0.64 7.69 72.36 0.56 1.20 16 28 O -0.40 -11.19 11.54 -148.98 -1.72 -12.91 16 29 C 0.06 1.52 6.15 72.66 0.45 1.97 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.73 6.82 -2.39 -0.02 0.71 16 35 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 36 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 37 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.11 6.22 5.94 -2.91 -0.02 6.20 16 39 H 0.29 13.60 8.30 -92.71 -0.77 12.84 16 40 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 42 H 0.10 1.03 6.46 -2.38 -0.02 1.01 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.08 1.87 7.97 -2.39 -0.02 1.85 16 47 H 0.08 2.57 7.62 -2.39 -0.02 2.55 16 Total: -1.00 -65.91 388.98 4.96 -60.96 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.96 Total: 31.13 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 4.64 Total: -35.27 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.23 Total: -42.78 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -2.90 Total: -53.88 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -65.91 4.96 -60.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869948759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.280 kcal (2) G-P(sol) polarization free energy of solvation -65.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.45 seconds