Wall clock time and date at job start Tue Mar 31 2020 22:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00450 * 2 1 4 4 H 1.48499 * 109.46843 * 270.00210 * 3 2 1 5 5 H 1.48496 * 109.47127 * 29.99892 * 3 2 1 6 6 H 1.48501 * 109.47109 * 149.99864 * 3 2 1 7 7 C 1.37881 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99393 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00358 * 180.02562 * 7 2 1 10 10 N 1.46893 * 109.47079 * 180.02562 * 9 7 2 11 11 C 1.46961 * 110.99786 * 170.00248 * 10 9 7 12 12 C 1.53053 * 109.36514 * 183.18767 * 11 10 9 13 13 N 1.46953 * 109.36423 * 301.59900 * 12 11 10 14 14 C 1.46902 * 111.00088 * 183.19016 * 13 12 11 15 15 C 1.50703 * 109.47277 * 170.00119 * 14 13 12 16 16 C 1.38293 * 120.14701 * 105.01839 * 15 14 13 17 17 C 1.37741 * 120.04734 * 179.97438 * 16 15 14 18 18 C 1.38982 * 120.87354 * 0.08590 * 17 16 15 19 19 C 1.39145 * 118.93899 * 359.97438 * 18 17 16 20 20 C 1.38463 * 120.19680 * 359.83044 * 19 18 17 21 21 O 1.35898 * 119.88666 * 180.24496 * 20 19 18 22 22 O 1.36148 * 111.20385 * 179.30408 * 18 17 16 23 23 C 1.43775 * 109.20452 * 19.61408 * 22 18 17 24 24 C 1.51664 * 132.10864 * 180.88482 * 17 16 15 25 25 H 1.08997 * 110.93800 * 282.54003 * 24 17 16 26 26 O 1.42904 * 110.93109 * 46.21375 * 24 17 16 27 27 C 1.46956 * 110.88259 * 59.31715 * 13 12 11 28 28 C 1.46957 * 111.00001 * 293.79714 * 10 9 7 29 29 H 0.97006 * 119.99527 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46661 * 59.99906 * 9 7 2 31 31 H 1.09003 * 109.46870 * 299.99902 * 9 7 2 32 32 H 1.08996 * 109.49482 * 63.21898 * 11 10 9 33 33 H 1.09006 * 109.50584 * 303.16104 * 11 10 9 34 34 H 1.08999 * 109.49103 * 181.62483 * 12 11 10 35 35 H 1.09003 * 109.48879 * 61.56222 * 12 11 10 36 36 H 1.08999 * 109.47126 * 49.99669 * 14 13 12 37 37 H 1.09003 * 109.46654 * 289.99252 * 14 13 12 38 38 H 1.08000 * 119.97612 * 359.96836 * 16 15 14 39 39 H 1.08002 * 119.90490 * 180.11364 * 19 18 17 40 40 H 0.96700 * 113.99451 * 90.00349 * 21 20 19 41 41 H 1.09003 * 110.74624 * 90.39964 * 23 22 18 42 42 H 1.09000 * 110.74463 * 213.56445 * 23 22 18 43 43 H 0.96704 * 113.99840 * 180.02562 * 26 24 17 44 44 H 1.08998 * 109.48726 * 60.65205 * 27 13 12 45 45 H 1.08999 * 109.48758 * 180.71252 * 27 13 12 46 46 H 1.09003 * 109.48938 * 296.78124 * 28 10 9 47 47 H 1.08997 * 109.48933 * 56.85186 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4643 -2.1294 0.0005 9 6 3.5115 -1.1943 0.0011 10 7 4.0010 -2.5792 0.0010 11 6 5.4505 -2.6254 -0.2366 12 6 5.9068 -4.0846 -0.3084 13 7 5.5598 -4.7659 0.9465 14 6 6.0494 -6.1509 0.9465 15 6 5.8967 -6.7379 2.3261 16 6 4.8895 -7.6494 2.5855 17 6 4.7521 -8.1849 3.8471 18 6 5.6147 -7.8208 4.8742 19 6 6.6262 -6.9025 4.6103 20 6 6.7670 -6.3671 3.3411 21 8 7.7603 -5.4745 3.0891 22 8 5.2924 -8.4540 6.0356 23 6 4.4889 -9.6084 5.7376 24 6 3.7797 -9.1969 4.4219 25 1 2.8104 -8.7384 4.6171 26 8 3.6438 -10.3242 3.5542 27 6 4.1103 -4.7197 1.1842 28 6 3.6540 -3.2605 1.2560 29 1 -0.4850 0.8401 -0.0004 30 1 3.8744 -0.6802 0.8912 31 1 3.8752 -0.6806 -0.8889 32 1 5.9691 -2.1220 0.5793 33 1 5.6812 -2.1256 -1.1775 34 1 6.9861 -4.1213 -0.4559 35 1 5.4086 -4.5808 -1.1414 36 1 7.1010 -6.1645 0.6601 37 1 5.4713 -6.7405 0.2348 38 1 4.2102 -7.9414 1.7984 39 1 7.3064 -6.6100 5.3965 40 1 8.5880 -5.8796 2.7962 41 1 5.1160 -10.4875 5.5892 42 1 3.7593 -9.7854 6.5279 43 1 3.0318 -10.9989 3.8789 44 1 3.5918 -5.2232 0.3683 45 1 3.8800 -5.2195 2.1251 46 1 4.1522 -2.7643 2.0890 47 1 2.5747 -3.2239 1.4033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872733785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:10 Heat of formation + Delta-G solvation = -65.961582 kcal Electronic energy + Delta-G solvation = -29171.040483 eV Core-core repulsion = 25127.152351 eV Total energy + Delta-G solvation = -4043.888132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.55482 -39.47796 -38.37434 -36.94241 -36.18763 -35.03790 -32.49824 -31.40842 -31.02646 -30.33994 -28.67224 -28.31562 -26.11775 -23.94336 -23.40975 -23.07715 -22.22966 -21.15675 -20.77478 -19.16269 -18.79586 -18.17416 -17.23958 -16.77179 -16.59218 -15.97239 -15.75792 -15.42814 -14.86757 -14.73659 -14.42080 -14.33012 -14.31261 -14.08597 -13.97969 -13.69244 -13.41354 -13.31376 -12.90111 -12.50664 -12.34557 -12.02409 -11.97484 -11.81916 -11.52861 -11.30152 -11.15808 -10.90360 -10.73754 -10.65637 -10.58179 -10.49930 -10.31922 -9.99625 -9.77667 -9.22344 -8.99160 -8.53341 -8.32755 -8.03708 -7.29588 -6.02033 -3.98902 0.91746 1.08901 2.77376 3.21757 3.31568 3.38814 3.42238 3.75163 3.93046 4.08338 4.20170 4.31618 4.45655 4.54779 4.67387 4.77228 4.85161 4.93721 5.06085 5.14806 5.27994 5.30646 5.34000 5.42751 5.51121 5.58879 5.73207 5.76224 5.82108 5.92105 5.94235 6.07953 6.10898 6.16050 6.19371 6.34053 6.39832 6.58997 6.71201 6.77774 6.89926 7.03612 7.07650 7.27300 7.34629 7.54662 7.64538 7.97244 8.11463 8.70358 9.06077 9.60188 11.11101 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.002730 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.029294 B =10254.933856 C =10997.392495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.530 5.530 11 C 0.054 3.946 12 C 0.064 3.936 13 N -0.527 5.527 14 C 0.108 3.892 15 C -0.130 4.130 16 C -0.027 4.027 17 C -0.185 4.185 18 C 0.125 3.875 19 C -0.171 4.171 20 C 0.175 3.825 21 O -0.477 6.477 22 O -0.299 6.299 23 C 0.021 3.979 24 C 0.121 3.879 25 H 0.090 0.910 26 O -0.549 6.549 27 C 0.059 3.941 28 C 0.069 3.931 29 H 0.263 0.737 30 H -0.011 1.011 31 H 0.023 0.977 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.387 0.613 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.382 0.618 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.029 0.971 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.174 -22.143 8.878 27.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.064 4.064 13 N -0.251 5.251 14 C -0.020 4.020 15 C -0.132 4.132 16 C -0.046 4.046 17 C -0.186 4.186 18 C 0.080 3.920 19 C -0.190 4.190 20 C 0.129 3.871 21 O -0.286 6.286 22 O -0.213 6.213 23 C -0.054 4.054 24 C 0.061 3.939 25 H 0.107 0.893 26 O -0.355 6.355 27 C -0.069 4.069 28 C -0.060 4.060 29 H 0.073 0.927 30 H 0.007 0.993 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.243 0.757 41 H 0.105 0.895 42 H 0.127 0.873 43 H 0.230 0.770 44 H 0.056 0.944 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.081 -21.196 8.903 26.959 hybrid contribution 0.166 0.250 0.242 0.386 sum 14.247 -20.945 9.145 26.932 Atomic orbital electron populations 1.69899 1.06119 1.26780 1.51280 1.24899 0.94737 0.98857 0.94876 0.86859 0.80373 0.83993 0.78544 1.20184 1.21244 1.19215 1.21038 0.88775 0.94660 1.50118 0.90225 1.20148 0.96998 0.84200 0.95047 1.62117 1.10428 1.18982 1.33914 1.22101 0.90187 0.94813 1.00355 1.22118 0.99417 0.94996 0.89914 1.62171 1.14800 1.13460 1.34715 1.20732 1.00619 0.89164 0.91465 1.20015 0.97870 0.98735 0.96531 1.20102 0.95876 0.93661 0.94925 1.20317 0.99270 1.03399 0.95576 1.19153 0.93318 0.94624 0.84946 1.20392 0.99822 1.00798 0.98019 1.17711 0.90625 0.88299 0.90417 1.84941 1.22939 1.31928 1.88790 1.86867 1.68466 1.38968 1.26993 1.24684 0.94245 0.88430 0.98071 1.21897 0.97704 0.86040 0.88214 0.89268 1.86624 1.68689 1.31851 1.48343 1.22234 0.86445 0.98028 1.00161 1.22001 1.01580 0.91750 0.90659 0.92720 0.99328 0.95869 0.95012 0.91075 0.91115 0.94324 0.90249 0.94160 0.85181 0.84690 0.75671 0.89548 0.87252 0.76993 0.94375 0.91203 0.95301 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.95 27.47 -169.99 -4.67 17.28 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.51 -14.71 9.03 -34.44 -0.31 -15.02 16 8 H 0.08 2.50 7.37 -52.48 -0.39 2.11 16 9 C 0.16 4.08 3.79 -4.98 -0.02 4.06 16 10 N -0.53 -11.59 4.70 -235.91 -1.11 -12.70 16 11 C 0.05 0.98 5.61 -3.76 -0.02 0.96 16 12 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16 13 N -0.53 -7.93 4.70 -235.91 -1.11 -9.04 16 14 C 0.11 1.29 4.71 -4.97 -0.02 1.27 16 15 C -0.13 -1.56 4.45 -104.41 -0.46 -2.03 16 16 C -0.03 -0.32 9.03 -39.74 -0.36 -0.68 16 17 C -0.18 -2.11 5.98 -104.05 -0.62 -2.73 16 18 C 0.12 1.48 7.02 -38.97 -0.27 1.21 16 19 C -0.17 -1.99 10.00 -39.16 -0.39 -2.38 16 20 C 0.18 2.07 6.66 -39.31 -0.26 1.81 16 21 O -0.48 -5.19 12.82 -19.42 -0.25 -5.44 16 22 O -0.30 -3.27 11.10 -20.21 -0.22 -3.50 16 23 C 0.02 0.15 7.75 38.23 0.30 0.45 16 24 C 0.12 1.02 4.54 -26.34 -0.12 0.90 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 O -0.55 -4.24 13.40 -35.23 -0.47 -4.72 16 27 C 0.06 1.00 5.42 -3.77 -0.02 0.98 16 28 C 0.07 1.41 5.43 -3.77 -0.02 1.39 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 31 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.81 7.89 -51.93 -0.41 0.40 16 37 H 0.04 0.47 7.94 -51.93 -0.41 0.06 16 38 H 0.13 1.45 8.01 -52.49 -0.42 1.03 16 39 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.39 2.18 9.06 45.56 0.41 2.59 16 41 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.38 0.98 9.12 45.56 0.42 1.39 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.13 6.72 -51.93 -0.35 0.78 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 2.03 6.79 -51.93 -0.35 1.68 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -35.82 376.40 -9.76 -45.58 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.65 Total: 1.04 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.73 Total: -7.00 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -1.44 Total: -48.93 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.95 Total: -13.65 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.82 -9.76 -45.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872733785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.377 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds