Wall clock time and date at job start Tue Mar 31 2020 22:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00450 * 2 1 4 4 H 1.48499 * 109.46843 * 270.00210 * 3 2 1 5 5 H 1.48496 * 109.47127 * 29.99892 * 3 2 1 6 6 H 1.48501 * 109.47109 * 149.99864 * 3 2 1 7 7 C 1.37881 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99393 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00358 * 180.02562 * 7 2 1 10 10 N 1.46893 * 109.47079 * 180.02562 * 9 7 2 11 11 C 1.46961 * 110.99786 * 170.00248 * 10 9 7 12 12 C 1.53053 * 109.36514 * 183.18767 * 11 10 9 13 13 N 1.46953 * 109.36423 * 301.59900 * 12 11 10 14 14 C 1.46902 * 111.00088 * 183.19016 * 13 12 11 15 15 C 1.50703 * 109.47277 * 170.00119 * 14 13 12 16 16 C 1.38293 * 120.14701 * 105.01839 * 15 14 13 17 17 C 1.37741 * 120.04734 * 179.97438 * 16 15 14 18 18 C 1.38982 * 120.87354 * 0.08590 * 17 16 15 19 19 C 1.39145 * 118.93899 * 359.97438 * 18 17 16 20 20 C 1.38463 * 120.19680 * 359.83044 * 19 18 17 21 21 O 1.35898 * 119.88666 * 180.24496 * 20 19 18 22 22 O 1.36148 * 111.20385 * 179.30408 * 18 17 16 23 23 C 1.43775 * 109.20452 * 19.61408 * 22 18 17 24 24 C 1.51664 * 132.10864 * 180.88482 * 17 16 15 25 25 H 1.08997 * 110.93800 * 282.54003 * 24 17 16 26 26 O 1.42904 * 110.93109 * 46.21375 * 24 17 16 27 27 C 1.46956 * 110.88259 * 59.31715 * 13 12 11 28 28 C 1.46957 * 111.00001 * 293.79714 * 10 9 7 29 29 H 0.97006 * 119.99527 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46661 * 59.99906 * 9 7 2 31 31 H 1.09003 * 109.46870 * 299.99902 * 9 7 2 32 32 H 1.08996 * 109.49482 * 63.21898 * 11 10 9 33 33 H 1.09006 * 109.50584 * 303.16104 * 11 10 9 34 34 H 1.08999 * 109.49103 * 181.62483 * 12 11 10 35 35 H 1.09003 * 109.48879 * 61.56222 * 12 11 10 36 36 H 1.08999 * 109.47126 * 49.99669 * 14 13 12 37 37 H 1.09003 * 109.46654 * 289.99252 * 14 13 12 38 38 H 1.08000 * 119.97612 * 359.96836 * 16 15 14 39 39 H 1.08002 * 119.90490 * 180.11364 * 19 18 17 40 40 H 0.96700 * 113.99451 * 90.00349 * 21 20 19 41 41 H 1.09003 * 110.74624 * 90.39964 * 23 22 18 42 42 H 1.09000 * 110.74463 * 213.56445 * 23 22 18 43 43 H 0.96704 * 113.99840 * 180.02562 * 26 24 17 44 44 H 1.08998 * 109.48726 * 60.65205 * 27 13 12 45 45 H 1.08999 * 109.48758 * 180.71252 * 27 13 12 46 46 H 1.09003 * 109.48938 * 296.78124 * 28 10 9 47 47 H 1.08997 * 109.48933 * 56.85186 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4643 -2.1294 0.0005 9 6 3.5115 -1.1943 0.0011 10 7 4.0010 -2.5792 0.0010 11 6 5.4505 -2.6254 -0.2366 12 6 5.9068 -4.0846 -0.3084 13 7 5.5598 -4.7659 0.9465 14 6 6.0494 -6.1509 0.9465 15 6 5.8967 -6.7379 2.3261 16 6 4.8895 -7.6494 2.5855 17 6 4.7521 -8.1849 3.8471 18 6 5.6147 -7.8208 4.8742 19 6 6.6262 -6.9025 4.6103 20 6 6.7670 -6.3671 3.3411 21 8 7.7603 -5.4745 3.0891 22 8 5.2924 -8.4540 6.0356 23 6 4.4889 -9.6084 5.7376 24 6 3.7797 -9.1969 4.4219 25 1 2.8104 -8.7384 4.6171 26 8 3.6438 -10.3242 3.5542 27 6 4.1103 -4.7197 1.1842 28 6 3.6540 -3.2605 1.2560 29 1 -0.4850 0.8401 -0.0004 30 1 3.8744 -0.6802 0.8912 31 1 3.8752 -0.6806 -0.8889 32 1 5.9691 -2.1220 0.5793 33 1 5.6812 -2.1256 -1.1775 34 1 6.9861 -4.1213 -0.4559 35 1 5.4086 -4.5808 -1.1414 36 1 7.1010 -6.1645 0.6601 37 1 5.4713 -6.7405 0.2348 38 1 4.2102 -7.9414 1.7984 39 1 7.3064 -6.6100 5.3965 40 1 8.5880 -5.8796 2.7962 41 1 5.1160 -10.4875 5.5892 42 1 3.7593 -9.7854 6.5279 43 1 3.0318 -10.9989 3.8789 44 1 3.5918 -5.2232 0.3683 45 1 3.8800 -5.2195 2.1251 46 1 4.1522 -2.7643 2.0890 47 1 2.5747 -3.2239 1.4033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872733785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:09 Heat of formation + Delta-G solvation = -97.665653 kcal Electronic energy + Delta-G solvation = -29172.415275 eV Core-core repulsion = 25127.152351 eV Total energy + Delta-G solvation = -4045.262924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.31245 -40.50818 -39.57489 -37.55491 -37.14320 -36.39167 -34.58435 -32.39232 -31.97400 -31.75359 -30.13806 -29.22150 -27.52882 -25.24262 -24.49619 -24.24539 -23.03438 -22.90095 -21.78048 -20.61780 -19.59157 -18.95763 -18.76681 -18.02655 -17.40728 -17.23253 -16.73460 -16.38532 -16.09549 -15.91107 -15.86744 -15.60814 -15.37179 -15.28495 -14.98306 -14.89974 -14.75666 -14.42501 -14.38049 -13.71151 -13.61703 -13.31385 -13.15374 -12.91228 -12.81420 -12.72604 -12.31544 -12.24389 -12.16050 -12.07210 -11.85010 -11.72184 -11.55120 -11.42338 -11.33155 -11.17179 -10.78784 -9.83581 -9.29632 -9.12891 -9.02165 -8.29534 -6.32885 0.09299 0.22200 1.33615 1.35505 1.46507 2.07347 2.33625 2.40271 3.01928 3.03295 3.19340 3.22026 3.33863 3.37885 3.56985 3.79848 3.96035 3.99483 4.02699 4.19732 4.24460 4.27692 4.35406 4.42030 4.49757 4.56579 4.59927 4.63258 4.65393 4.72516 4.80393 4.87927 4.94899 4.96469 5.00446 5.03559 5.10186 5.17158 5.28102 5.35927 5.48521 5.51481 5.93323 6.00595 6.07448 6.17326 6.35490 6.64769 6.72429 6.77165 6.91976 7.30690 8.87040 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.002730 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.029294 B =10254.933856 C =10997.392495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.948 3.052 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.517 4.517 8 H 0.037 0.963 9 C 0.173 3.827 10 N -0.543 5.543 11 C 0.052 3.948 12 C 0.070 3.930 13 N -0.533 5.533 14 C 0.112 3.888 15 C -0.141 4.141 16 C -0.036 4.036 17 C -0.201 4.201 18 C 0.116 3.884 19 C -0.184 4.184 20 C 0.175 3.825 21 O -0.489 6.489 22 O -0.315 6.315 23 C 0.022 3.978 24 C 0.123 3.877 25 H 0.097 0.903 26 O -0.564 6.564 27 C 0.076 3.924 28 C 0.074 3.926 29 H 0.267 0.733 30 H -0.018 1.018 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.038 0.962 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.409 0.591 41 H 0.096 0.904 42 H 0.140 0.860 43 H 0.404 0.596 44 H 0.033 0.967 45 H 0.074 0.926 46 H 0.017 0.983 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.448 -22.718 8.909 29.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.179 1.179 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.045 3.955 10 N -0.268 5.268 11 C -0.076 4.076 12 C -0.058 4.058 13 N -0.258 5.258 14 C -0.015 4.015 15 C -0.143 4.143 16 C -0.055 4.055 17 C -0.202 4.202 18 C 0.070 3.930 19 C -0.203 4.203 20 C 0.130 3.870 21 O -0.302 6.302 22 O -0.230 6.230 23 C -0.053 4.053 24 C 0.063 3.937 25 H 0.115 0.885 26 O -0.373 6.373 27 C -0.053 4.053 28 C -0.055 4.055 29 H 0.076 0.924 30 H 0.000 1.000 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.064 0.936 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.269 0.731 41 H 0.114 0.886 42 H 0.158 0.842 43 H 0.255 0.745 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.035 0.965 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.381 -21.824 8.930 28.712 hybrid contribution -0.575 0.293 0.267 0.699 sum 15.805 -21.531 9.196 28.248 Atomic orbital electron populations 1.70050 1.08061 1.28124 1.52536 1.25843 0.95635 1.03119 0.94296 0.85701 0.79181 0.78591 0.79389 1.18623 1.20629 1.17941 1.21239 0.90994 0.93263 1.49989 0.94479 1.19911 0.94337 0.86375 0.94830 1.62050 1.13404 1.16975 1.34373 1.22251 0.87276 0.97461 1.00649 1.22117 1.01360 0.92608 0.89713 1.62145 1.12939 1.15747 1.34995 1.20789 1.01895 0.87128 0.91701 1.20054 0.98284 0.99250 0.96682 1.20213 0.96003 0.93946 0.95292 1.20713 1.00015 1.04103 0.95394 1.19345 0.93469 0.94762 0.85398 1.20571 1.00266 1.01092 0.98368 1.17744 0.90854 0.88059 0.90391 1.84877 1.23962 1.32394 1.88923 1.86839 1.69029 1.40121 1.26970 1.24941 0.94491 0.87421 0.98419 1.21892 0.97496 0.85874 0.88396 0.88508 1.86569 1.69702 1.32290 1.48731 1.21958 0.88118 0.94907 1.00290 1.21878 0.99479 0.94195 0.89911 0.92384 1.00018 0.95051 0.95485 0.89861 0.87605 0.94388 0.87812 0.93643 0.85108 0.83977 0.73110 0.88613 0.84189 0.74465 0.94879 0.90752 0.96494 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 2 C 0.01 0.50 5.47 84.66 0.46 0.96 16 3 Si 0.95 45.28 27.47 68.60 1.88 47.17 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.26 -11.62 6.54 99.48 0.65 -10.97 16 7 C -0.52 -30.94 9.03 25.60 0.23 -30.71 16 8 H 0.04 2.47 7.37 -2.91 -0.02 2.45 16 9 C 0.17 8.71 3.79 85.56 0.32 9.04 16 10 N -0.54 -23.88 4.70 -900.27 -4.23 -28.12 16 11 C 0.05 1.78 5.61 86.31 0.48 2.27 16 12 C 0.07 1.90 5.61 86.31 0.48 2.38 16 13 N -0.53 -15.13 4.70 -900.27 -4.23 -19.36 16 14 C 0.11 2.43 4.71 85.56 0.40 2.83 16 15 C -0.14 -3.22 4.45 -19.73 -0.09 -3.31 16 16 C -0.04 -0.82 9.03 22.17 0.20 -0.62 16 17 C -0.20 -4.47 5.98 -19.50 -0.12 -4.59 16 18 C 0.12 2.67 7.02 22.67 0.16 2.83 16 19 C -0.18 -4.15 10.00 22.54 0.23 -3.93 16 20 C 0.18 3.92 6.66 22.45 0.15 4.07 16 21 O -0.49 -9.67 12.82 -92.40 -1.18 -10.86 16 22 O -0.32 -6.58 11.10 -95.24 -1.06 -7.63 16 23 C 0.02 0.27 7.75 72.68 0.56 0.83 16 24 C 0.12 1.90 4.54 30.85 0.14 2.04 16 25 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 26 O -0.56 -7.83 13.40 -148.98 -2.00 -9.83 16 27 C 0.08 2.55 5.42 86.31 0.47 3.02 16 28 C 0.07 3.14 5.43 86.31 0.47 3.61 16 29 H 0.27 15.82 8.31 -92.70 -0.77 15.04 16 30 H -0.02 -0.92 7.18 -2.39 -0.02 -0.94 16 31 H 0.03 1.53 7.45 -2.39 -0.02 1.51 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 2.65 8.07 -2.38 -0.02 2.63 16 34 H 0.11 2.20 8.07 -2.39 -0.02 2.18 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.76 7.89 -2.39 -0.02 1.74 16 37 H 0.05 0.96 7.94 -2.39 -0.02 0.94 16 38 H 0.13 2.87 8.01 -2.91 -0.02 2.85 16 39 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.41 3.62 9.06 -74.06 -0.67 2.95 16 41 H 0.10 1.00 8.12 -2.39 -0.02 0.98 16 42 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.40 1.28 9.12 -74.05 -0.68 0.60 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 2.43 6.72 -2.39 -0.02 2.42 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 2.70 6.79 -2.39 -0.02 2.68 16 Total: -1.00 -79.22 376.40 -6.36 -85.58 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -0.40 Total: 12.33 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 4.56 Total: -9.26 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -8.16 Total: -107.50 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -4.24 Total: -28.32 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -79.22 -6.36 -85.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872733785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.082 kcal (2) G-P(sol) polarization free energy of solvation -79.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds