Wall clock time and date at job start Tue Mar 31 2020 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.46959 * 110.99309 * 293.79645 * 10 9 7 12 12 C 1.53054 * 109.36022 * 176.81270 * 11 10 9 13 13 N 1.46951 * 109.36727 * 58.40197 * 12 11 10 14 14 C 1.46903 * 111.00354 * 176.81450 * 13 12 11 15 15 C 1.50698 * 109.46672 * 293.79821 * 14 13 12 16 16 C 1.38298 * 120.14417 * 104.72412 * 15 14 13 17 17 C 1.37749 * 120.04888 * 179.72375 * 16 15 14 18 18 C 1.38976 * 120.87127 * 0.81355 * 17 16 15 19 19 C 1.39155 * 118.93830 * 359.38788 * 18 17 16 20 20 C 1.38460 * 120.19415 * 0.15700 * 19 18 17 21 21 O 1.35898 * 119.88538 * 180.11536 * 20 19 18 22 22 O 1.36142 * 111.22388 * 179.03268 * 18 17 16 23 23 C 1.43767 * 109.26021 * 18.87945 * 22 18 17 24 24 C 1.51661 * 132.11260 * 180.72905 * 17 16 15 25 25 H 1.09003 * 110.93548 * 46.40508 * 24 17 16 26 26 O 1.42896 * 110.97126 * 282.73591 * 24 17 16 27 27 C 1.46965 * 110.87797 * 300.68074 * 13 12 11 28 28 C 1.46956 * 111.00010 * 169.99973 * 10 9 7 29 29 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 31 31 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 32 32 H 1.08992 * 109.48999 * 296.77608 * 11 10 9 33 33 H 1.09000 * 109.48679 * 56.84883 * 11 10 9 34 34 H 1.09001 * 109.48827 * 298.43413 * 12 11 10 35 35 H 1.08995 * 109.49136 * 178.37301 * 12 11 10 36 36 H 1.09001 * 109.46960 * 53.79748 * 14 13 12 37 37 H 1.08995 * 109.47158 * 173.80027 * 14 13 12 38 38 H 1.08003 * 119.97415 * 359.97438 * 16 15 14 39 39 H 1.07993 * 119.90071 * 180.13371 * 19 18 17 40 40 H 0.96703 * 113.99821 * 269.98291 * 21 20 19 41 41 H 1.09004 * 110.74382 * 90.62573 * 23 22 18 42 42 H 1.08997 * 110.74575 * 213.96821 * 23 22 18 43 43 H 0.96699 * 114.00158 * 185.99522 * 26 24 17 44 44 H 1.08998 * 109.49097 * 299.34702 * 27 13 12 45 45 H 1.09000 * 109.48428 * 179.28355 * 27 13 12 46 46 H 1.09003 * 109.49025 * 303.15368 * 28 10 9 47 47 H 1.09001 * 109.49009 * 63.19555 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 2.9683 -3.6563 -1.2559 12 6 4.0038 -4.7811 -1.1844 13 7 3.3191 -6.0594 -0.9461 14 6 4.2737 -7.1760 -0.9461 15 6 4.8576 -7.3376 -2.3260 16 6 6.1483 -6.9157 -2.5876 17 6 6.6821 -7.0695 -3.8482 18 6 5.9338 -7.6313 -4.8757 19 6 4.6339 -8.0511 -4.6103 20 6 4.1005 -7.9050 -3.3409 21 8 2.8312 -8.3193 -3.0881 22 8 6.6426 -7.6695 -6.0375 23 6 8.0435 -7.5378 -5.7429 24 6 8.0420 -6.7268 -4.4255 25 1 8.8413 -7.0587 -3.7629 26 8 8.1481 -5.3262 -4.6879 27 6 2.5561 -6.0188 0.3093 28 6 1.5206 -4.8941 0.2377 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5570 0.8898 31 1 0.6239 -2.5567 -0.8903 32 1 2.2892 -3.8397 -2.0884 33 1 3.4763 -2.7033 -1.4036 34 1 4.6994 -4.5837 -0.3688 35 1 4.5514 -4.8318 -2.1254 36 1 5.0736 -6.9702 -0.2349 37 1 3.7596 -8.0934 -0.6594 38 1 6.7397 -6.4690 -1.8020 39 1 4.0393 -8.4917 -5.3968 40 1 2.1591 -7.6397 -3.2347 41 1 8.5003 -8.5162 -5.5936 42 1 8.5544 -6.9886 -6.5337 43 1 8.9631 -5.0716 -5.1416 44 1 3.2352 -5.8355 1.1419 45 1 2.0481 -6.9718 0.4570 46 1 0.9731 -4.8434 1.1789 47 1 0.8247 -5.0913 -0.5777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872733786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:55 Heat of formation + Delta-G solvation = -71.875690 kcal Electronic energy + Delta-G solvation = -29242.904017 eV Core-core repulsion = 25198.759430 eV Total energy + Delta-G solvation = -4044.144587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.19 seconds Orbital eigenvalues (eV) -41.55288 -39.46944 -38.30598 -36.73537 -36.13482 -34.97649 -32.56762 -31.43935 -30.97428 -30.31787 -28.61638 -27.98704 -25.88908 -23.98641 -23.38497 -23.01980 -22.23599 -21.44265 -20.84095 -19.17196 -18.84966 -17.70397 -17.23169 -16.56604 -16.29522 -16.27070 -15.70764 -15.64229 -14.95738 -14.66465 -14.50871 -14.26616 -14.11062 -13.95234 -13.94592 -13.50053 -13.44238 -13.23135 -12.86894 -12.51131 -12.21061 -11.95415 -11.93447 -11.66161 -11.57210 -11.14390 -10.92747 -10.82284 -10.70902 -10.66681 -10.58392 -10.53055 -10.33133 -10.24794 -9.69147 -9.16843 -8.99208 -8.41879 -8.34527 -8.10436 -7.19891 -6.00455 -4.01779 0.90878 1.11152 2.85117 3.15359 3.35228 3.38936 3.42046 3.86342 3.93431 4.10729 4.26904 4.33324 4.44459 4.52751 4.70880 4.82466 4.88631 4.97082 5.00586 5.19480 5.31154 5.34854 5.35972 5.46681 5.55161 5.61342 5.72939 5.82672 5.85419 5.93464 5.95767 6.11094 6.12347 6.17831 6.23445 6.35645 6.45950 6.62727 6.73154 6.79411 7.17645 7.21428 7.24587 7.37600 7.41034 7.60428 7.82379 8.11937 8.23671 8.58235 9.05540 9.62341 11.10415 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.002925 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.380598 B = 9569.405756 C =10940.336981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.070 3.930 12 C 0.057 3.943 13 N -0.535 5.535 14 C 0.104 3.896 15 C -0.130 4.130 16 C -0.028 4.028 17 C -0.190 4.190 18 C 0.133 3.867 19 C -0.175 4.175 20 C 0.180 3.820 21 O -0.490 6.490 22 O -0.299 6.299 23 C 0.021 3.979 24 C 0.120 3.880 25 H 0.085 0.915 26 O -0.547 6.547 27 C 0.062 3.938 28 C 0.057 3.943 29 H 0.261 0.739 30 H 0.029 0.971 31 H -0.009 1.009 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.402 0.598 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.381 0.619 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.750 -19.070 -8.877 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.059 4.059 12 C -0.071 4.071 13 N -0.260 5.260 14 C -0.024 4.024 15 C -0.132 4.132 16 C -0.046 4.046 17 C -0.191 4.191 18 C 0.088 3.912 19 C -0.194 4.194 20 C 0.135 3.865 21 O -0.302 6.302 22 O -0.212 6.212 23 C -0.055 4.055 24 C 0.061 3.939 25 H 0.102 0.898 26 O -0.353 6.353 27 C -0.066 4.066 28 C -0.072 4.072 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.009 0.991 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.261 0.739 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.229 0.771 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 15.183 -19.481 -8.657 26.172 hybrid contribution 0.841 1.445 -0.407 1.721 sum 16.024 -18.036 -9.064 25.772 Atomic orbital electron populations 1.69952 1.06056 1.26849 1.51002 1.24986 0.94857 0.99279 0.95464 0.86567 0.79450 0.82798 0.78644 1.21366 1.20195 1.20260 1.21122 0.93410 0.90006 1.50085 0.92012 1.19684 0.90026 0.87297 0.96052 1.62285 1.28131 1.02764 1.33251 1.21964 0.95373 0.97440 0.91137 1.22269 0.96120 0.88496 1.00190 1.62174 1.25533 1.03123 1.35128 1.20809 0.94506 0.95579 0.91473 1.19969 0.94211 1.01983 0.96998 1.20108 0.93965 0.95567 0.95004 1.20292 0.96725 1.06852 0.95182 1.19222 0.92706 0.94651 0.84650 1.20381 0.94301 1.07292 0.97448 1.17695 0.85895 0.92921 0.90035 1.84661 1.13766 1.41555 1.90203 1.86841 1.18109 1.89018 1.27260 1.24585 0.81287 1.01250 0.98379 1.21752 0.95370 0.82472 0.94269 0.89765 1.86702 1.45584 1.21699 1.81297 1.22157 0.96043 0.98620 0.89761 1.22055 0.94709 0.89977 1.00436 0.92890 0.95276 0.99109 0.95498 0.89695 0.94432 0.91157 0.94173 0.89559 0.85355 0.84723 0.73938 0.89504 0.87168 0.77135 0.94311 0.91036 0.91055 0.95186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.40 8.47 -34.44 -0.29 -14.70 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 9 C 0.19 5.13 4.72 -4.98 -0.02 5.11 16 10 N -0.54 -11.79 4.70 -235.91 -1.11 -12.90 16 11 C 0.07 1.40 5.43 -3.76 -0.02 1.38 16 12 C 0.06 0.93 5.42 -3.77 -0.02 0.91 16 13 N -0.53 -7.66 4.70 -235.91 -1.11 -8.77 16 14 C 0.10 1.26 4.71 -4.98 -0.02 1.24 16 15 C -0.13 -1.58 4.45 -104.41 -0.47 -2.05 16 16 C -0.03 -0.32 9.00 -39.74 -0.36 -0.68 16 17 C -0.19 -2.18 5.98 -104.05 -0.62 -2.80 16 18 C 0.13 1.63 7.03 -38.97 -0.27 1.36 16 19 C -0.18 -2.11 10.00 -39.16 -0.39 -2.50 16 20 C 0.18 2.20 6.66 -39.31 -0.26 1.93 16 21 O -0.49 -5.61 12.82 -19.42 -0.25 -5.86 16 22 O -0.30 -3.42 11.10 -20.19 -0.22 -3.65 16 23 C 0.02 0.15 7.75 38.05 0.29 0.44 16 24 C 0.12 1.02 4.50 -26.52 -0.12 0.90 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 26 O -0.55 -5.17 13.43 -35.23 -0.47 -5.64 16 27 C 0.06 0.92 5.61 -3.76 -0.02 0.90 16 28 C 0.06 1.04 5.61 -3.77 -0.02 1.02 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 31 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.85 6.79 -51.93 -0.35 1.50 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.11 6.70 -51.93 -0.35 0.76 16 36 H 0.04 0.47 7.94 -51.93 -0.41 0.06 16 37 H 0.09 1.00 7.89 -51.93 -0.41 0.59 16 38 H 0.13 1.34 8.01 -52.48 -0.42 0.92 16 39 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.40 3.71 9.06 45.56 0.41 4.13 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.51 8.11 -51.93 -0.42 0.09 16 43 H 0.38 1.53 9.11 45.56 0.42 1.94 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 46 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -34.15 379.96 -10.12 -44.27 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.68 Total: 2.28 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.72 Total: -6.06 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -1.48 Total: -47.90 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.95 Total: -15.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.15 -10.12 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872733786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.601 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.19 seconds